J Bacteriol. 1972 April; 110(1): 402-429
Copyright © 1972 American Society for Microbiology. All Rights Reserved.
Taxonomy of Aerobic Marine Eubacteria
Linda Baumann,
Paul Baumann,
M. Mandel and
Richard D. Allen
Department of Microbiology, University of Hawaii, Honolulu, Hawaii 96822, and Department of Biology, The University of Texas, M. D. Anderson Hospital and Tumor Institute at Houston, Houston, Texas 77025
ABSTRACT
Two hundred and eighteen strains of nonfermentative marine bacteria were submitted to an extensive morphological, physiological, and nutritional characterization. All the strains were gram-negative, straight or curved rods which were motile by means of polar or peritrichous flagella. A wide variety of organic substrates served as sole sources of carbon and energy. The strains differed extensively in their nutritional versatility, being able to utilize from 11 to 85 carbon compounds. Some strains had an extracellular amylase, gelatinase, lipase, or chitinase and were able to utilize n-hexadecane and to denitrify. None of the strains had a yellow, cell-associated pigment or a constitutive arginine dihydrolase system, nor were they able to hydrolyze cellulose or agar. The results of the physiological and nutritional characterization were submitted to a numerical analysis which clustered the strains into 22 groups on the basis of phenotypic similarities. The majority of these groups were separable by a large number of unrelated phenotypic traits. Analysis of the moles per cent guanine plus cytosine (GC) content in the deoxyribonucleic acid of representative strains indicated that the peritrichously flagellated groups had a GC content of 53.7 to 67.8 moles%; polarly flagellated strains had a GC content of 30.5 to 64.7 moles%. The peritrichously flagellated groups were assigned to the genus Alcaligenes. The polarly flagellated groups, which had a GC content of 43.2 to 48.0 moles%, were placed into a newly created genus, Alteromonas; groups which had a GC content of 57.8 to 64.7 moles% were placed into the genus Pseudomonas; and the remaining groups were left unassigned. Twelve groups were given the following designations: Alteromonas communis, A. vaga, A. macleodii, A. marinopraesens, Pseudomonas doudoroffi, P. marina, P. nautica, Alcaligenes pacificus, A. cupidus, A. venustus, and A. aestus. The problems of assigning species of aerobic marine bacteria to genera are discussed.
J Bacteriol. 1972 April; 110(1): 402-429
Copyright © 1972 American Society for Microbiology. All Rights Reserved.
This article has been cited by other articles:
-
Miyazaki, M., Nogi, Y., Fujiwara, Y., Horikoshi, K.
(2008). Psychromonas japonica sp. nov., Psychromonas aquimarina sp. nov., Psychromonas macrocephali sp. nov. and Psychromonas ossibalaenae sp. nov., psychrotrophic bacteria isolated from sediment adjacent to sperm whale carcasses off Kagoshima, Japan. Int. J. Syst. Evol. Microbiol.
58: 1709-1714
[Abstract]
[Full Text]
-
Zhang, D.-C., Li, H.-R., Xin, Y.-H., Liu, H.-C., Chen, B., Chi, Z.-M., Zhou, P.-J., Yu, Y.
(2008). Marinomonas arctica sp. nov., a psychrotolerant bacterium isolated from the Arctic. Int. J. Syst. Evol. Microbiol.
58: 1715-1718
[Abstract]
[Full Text]
-
Allers, E., Niesner, C., Wild, C., Pernthaler, J.
(2008). Microbes Enriched in Seawater after Addition of Coral Mucus. Appl. Environ. Microbiol.
74: 3274-3278
[Abstract]
[Full Text]
-
Miyazaki, M., Nogi, Y., Ohta, Y., Hatada, Y., Fujiwara, Y., Ito, S., Horikoshi, K.
(2008). Microbulbifer agarilyticus sp. nov. and Microbulbifer thermotolerans sp. nov., agar-degrading bacteria isolated from deep-sea sediment. Int. J. Syst. Evol. Microbiol.
58: 1128-1133
[Abstract]
[Full Text]
-
Miyazaki, M., Nogi, Y., Fujiwara, Y., Kawato, M., Kubokawa, K., Horikoshi, K.
(2008). Neptunomonas japonica sp. nov., an Osedax japonicus symbiont-like bacterium isolated from sediment adjacent to sperm whale carcasses off Kagoshima, Japan. Int. J. Syst. Evol. Microbiol.
58: 866-871
[Abstract]
[Full Text]
-
Krupovic, M., Daugelavicius, R., Bamford, D. H.
(2007). Polymyxin B Induces Lysis of Marine Pseudoalteromonads. Antimicrob. Agents Chemother.
51: 3908-3914
[Abstract]
[Full Text]
-
Kurata, A., Miyazaki, M., Kobayashi, T., Nogi, Y., Horikoshi, K.
(2007). Alkalimonas collagenimarina sp. nov., a psychrotolerant, obligate alkaliphile isolated from deep-sea sediment. Int. J. Syst. Evol. Microbiol.
57: 1549-1553
[Abstract]
[Full Text]
-
Arahal, D. R., Lekunberri, I., Gonzalez, J. M., Pascual, J., Pujalte, M. J., Pedros-Alio, C., Pinhassi, J.
(2007). Neptuniibacter caesariensis gen. nov., sp. nov., a novel marine genome-sequenced gammaproteobacterium. Int. J. Syst. Evol. Microbiol.
57: 1000-1006
[Abstract]
[Full Text]
-
Yi, H., Schumann, P., Chun, J.
(2007). Demequina aestuarii gen. nov., sp. nov., a novel actinomycete of the suborder Micrococcineae, and reclassification of Cellulomonas fermentans Bagnara et al. 1985 as Actinotalea fermentans gen. nov., comb. nov.. Int. J. Syst. Evol. Microbiol.
57: 151-156
[Abstract]
[Full Text]
-
Miyazaki, M., Nogi, Y., Usami, R., Horikoshi, K.
(2006). Shewanella surugensis sp. nov., Shewanella kaireitica sp. nov. and Shewanella abyssi sp. nov., isolated from deep-sea sediments of Suruga Bay, Japan.. Int. J. Syst. Evol. Microbiol.
56: 1607-1613
[Abstract]
[Full Text]
-
Yoon, J.-H., Kang, S.-J., Oh, T.-K.
(2005). Marinomonas dokdonensis sp. nov., isolated from sea water. Int. J. Syst. Evol. Microbiol.
55: 2303-2307
[Abstract]
[Full Text]
-
Martinez-Checa, F., Bejar, V., Llamas, I., del Moral, A., Quesada, E.
(2005). Alteromonas hispanica sp. nov., a polyunsaturated-fatty-acid-producing, halophilic bacterium isolated from Fuente de Piedra, southern Spain. Int. J. Syst. Evol. Microbiol.
55: 2385-2390
[Abstract]
[Full Text]
-
Park, Y.-D., Baik, K. S., Yi, H., Bae, K. S., Chun, J.
(2005). Pseudoalteromonas byunsanensis sp. nov., isolated from tidal flat sediment in Korea. Int. J. Syst. Evol. Microbiol.
55: 2519-2523
[Abstract]
[Full Text]
-
Ivanova, E. P., Bowman, J. P., Lysenko, A. M., Zhukova, N. V., Gorshkova, N. M., Sergeev, A. F., Mikhailov, V. V.
(2005). Alteromonas addita sp. nov.. Int. J. Syst. Evol. Microbiol.
55: 1065-1068
[Abstract]
[Full Text]
-
Marquez, M. C., Ventosa, A.
(2005). Marinobacter hydrocarbonoclasticus Gauthier et al. 1992 and Marinobacter aquaeolei Nguyen et al. 1999 are heterotypic synonyms. Int. J. Syst. Evol. Microbiol.
55: 1349-1351
[Abstract]
[Full Text]
-
Alonso, C., Pernthaler, J.
(2005). Incorporation of Glucose under Anoxic Conditions by Bacterioplankton from Coastal North Sea Surface Waters. Appl. Environ. Microbiol.
71: 1709-1716
[Abstract]
[Full Text]
-
Prabagaran, S. R., Suresh, K., Manorama, R., Delille, D., Shivaji, S.
(2005). Marinomonas ushuaiensis sp. nov., isolated from coastal sea water in Ushuaia, Argentina, sub-Antarctica. Int. J. Syst. Evol. Microbiol.
55: 309-313
[Abstract]
[Full Text]
-
Yi, H., Schumann, P., Sohn, K., Chun, J.
(2004). Serinicoccus marinus gen. nov., sp. nov., a novel actinomycete with L-ornithine and L-serine in the peptidoglycan. Int. J. Syst. Evol. Microbiol.
54: 1585-1589
[Abstract]
[Full Text]
-
Ivanova, E. P., Flavier, S., Christen, R.
(2004). Phylogenetic relationships among marine Alteromonas-like proteobacteria: emended description of the family Alteromonadaceae and proposal of Pseudoalteromonadaceae fam. nov., Colwelliaceae fam. nov., Shewanellaceae fam. nov., Moritellaceae fam. nov., Ferrimonadaceae fam. nov., Idiomarinaceae fam. nov. and Psychromonadaceae fam. nov.. Int. J. Syst. Evol. Microbiol.
54: 1773-1788
[Abstract]
[Full Text]
-
Kivela, H. M., Daugelavicius, R., Hankkio, R. H., Bamford, J. K. H., Bamford, D. H.
(2004). Penetration of Membrane-Containing Double-Stranded-DNA Bacteriophage PM2 into Pseudoalteromonas Hosts. J. Bacteriol.
186: 5342-5354
[Abstract]
[Full Text]
-
Ivanova, E. P., Gorshkova, N. M., Bowman, J. P., Lysenko, A. M., Zhukova, N. V., Sergeev, A. F., Mikhailov, V. V., Nicolau, D. V.
(2004). Shewanella pacifica sp. nov., a polyunsaturated fatty acid-producing bacterium isolated from sea water. Int. J. Syst. Evol. Microbiol.
54: 1083-1087
[Abstract]
[Full Text]
-
Ivanova, E. P., Nedashkovskaya, O. I., Sawabe, T., Zhukova, N. V., Frolova, G. M., Nicolau, D. V., Mikhailov, V. V., Bowman, J. P.
(2004). Shewanella affinis sp. nov., isolated from marine invertebrates. Int. J. Syst. Evol. Microbiol.
54: 1089-1093
[Abstract]
[Full Text]
-
Van Trappen, S., Tan, T.-L., Yang, J., Mergaert, J., Swings, J.
(2004). Alteromonas stellipolaris sp. nov., a novel, budding, prosthecate bacterium from Antarctic seas, and emended description of the genus Alteromonas. Int. J. Syst. Evol. Microbiol.
54: 1157-1163
[Abstract]
[Full Text]
-
Yoon, J.-H., Yeo, S.-H., Oh, T.-K., Park, Y.-H.
(2004). Alteromonas litorea sp. nov., a slightly halophilic bacterium isolated from an intertidal sediment of the Yellow Sea in Korea. Int. J. Syst. Evol. Microbiol.
54: 1197-1201
[Abstract]
[Full Text]
-
Yi, H., Chun, J.
(2004). Nocardioides ganghwensis sp. nov., isolated from tidal flat sediment. Int. J. Syst. Evol. Microbiol.
54: 1295-1299
[Abstract]
[Full Text]
-
Romanenko, L. A., Schumann, P., Rohde, M., Mikhailov, V. V., Stackebrandt, E.
(2004). Reinekea marinisedimentorum gen. nov., sp. nov., a novel gammaproteobacterium from marine coastal sediments. Int. J. Syst. Evol. Microbiol.
54: 669-673
[Abstract]
[Full Text]
-
Yi, H., Bae, K. S., Chun, J.
(2004). Thalassomonas ganghwensis sp. nov., isolated from tidal flat sediment. Int. J. Syst. Evol. Microbiol.
54: 377-380
[Abstract]
[Full Text]
-
Kaye, J. Z., Marquez, M. C., Ventosa, A., Baross, J. A.
(2004). Halomonas neptunia sp. nov., Halomonas sulfidaeris sp. nov., Halomonas axialensis sp. nov. and Halomonas hydrothermalis sp. nov.: halophilic bacteria isolated from deep-sea hydrothermal-vent environments. Int. J. Syst. Evol. Microbiol.
54: 499-511
[Abstract]
[Full Text]
-
Yi, H., Bae, K. S., Chun, J.
(2004). Aestuariibacter salexigens gen. nov., sp. nov. and Aestuariibacter halophilus sp. nov., isolated from tidal flat sediment, and emended description of Alteromonas macleodii. Int. J. Syst. Evol. Microbiol.
54: 571-576
[Abstract]
[Full Text]
-
Satomi, M., Kimura, B., Hayashi, M., Okuzumi, M., Fujii, T.
(2004). Marinospirillum insulare sp. nov., a novel halophilic helical bacterium isolated from kusaya gravy. Int. J. Syst. Evol. Microbiol.
54: 163-167
[Abstract]
[Full Text]
-
Romanenko, L. A., Schumann, P., Zhukova, N. V., Rohde, M., Mikhailov, V. V., Stackebrandt, E.
(2003). Oceanisphaera litoralis gen. nov., sp. nov., a novel halophilic bacterium from marine bottom sediments. Int. J. Syst. Evol. Microbiol.
53: 1885-1888
[Abstract]
[Full Text]
-
Gorshkova, N. M., Ivanova, E. P., Sergeev, A. F., Zhukova, N. V., Alexeeva, Y., Wright, J. P., Nicolau, D. V., Mikhailov, V. V., Christen, R.
(2003). Marinobacter excellens sp. nov., isolated from sediments of the Sea of Japan. Int. J. Syst. Evol. Microbiol.
53: 2073-2078
[Abstract]
[Full Text]
-
Martin, S., Marquez, M. C., Sanchez-Porro, C., Mellado, E., Arahal, D. R., Ventosa, A.
(2003). Marinobacter lipolyticus sp. nov., a novel moderate halophile with lipolytic activity. Int. J. Syst. Evol. Microbiol.
53: 1383-1387
[Abstract]
[Full Text]
-
Ivanova, E. P., Nedashkovskaya, O. I., Zhukova, N. V., Nicolau, D. V., Christen, R., Mikhailov, V. V.
(2003). Shewanella waksmanii sp. nov., isolated from a sipuncula (Phascolosoma japonicum). Int. J. Syst. Evol. Microbiol.
53: 1471-1477
[Abstract]
[Full Text]
-
Yoon, J.-H., Kim, I.-G., Kang, K. H., Oh, T.-K., Park, Y.-H.
(2003). Alteromonas marina sp. nov., isolated from sea water of the East Sea in Korea. Int. J. Syst. Evol. Microbiol.
53: 1625-1630
[Abstract]
[Full Text]
-
Yi, H., Chang, Y.-H., Oh, H. W., Bae, K. S., Chun, J.
(2003). Zooshikella ganghwensis gen. nov., sp. nov., isolated from tidal flat sediments. Int. J. Syst. Evol. Microbiol.
53: 1013-1018
[Abstract]
[Full Text]
-
Romanenko, L. A., Zhukova, N. V., Rohde, M., Lysenko, A. M., Mikhailov, V. V., Stackebrandt, E.
(2003). Glaciecola mesophila sp. nov., a novel marine agar-digesting bacterium. Int. J. Syst. Evol. Microbiol.
53: 647-651
[Abstract]
[Full Text]
-
Romanenko, L. A., Uchino, M., Mikhailov, V. V., Zhukova, N. V., Uchimura, T.
(2003). Marinomonas primoryensis sp. nov., a novel psychrophile isolated from coastal sea-ice in the Sea of Japan. Int. J. Syst. Evol. Microbiol.
53: 829-832
[Abstract]
[Full Text]
-
Satomi, M., Oikawa, H., Yano, Y.
(2003). Shewanella marinintestina sp. nov., Shewanella schlegeliana sp. nov. and Shewanella sairae sp. nov., novel eicosapentaenoic-acid-producing marine bacteria isolated from sea-animal intestines. Int. J. Syst. Evol. Microbiol.
53: 491-499
[Abstract]
[Full Text]
-
Ivanova, E. P., Sawabe, T., Hayashi, K., Gorshkova, N. M., Zhukova, N. V., Nedashkovskaya, O. I., Mikhailov, V. V., Nicolau, D. V., Christen, R.
(2003). Shewanella fidelis sp. nov., isolated from sediments and sea water. Int. J. Syst. Evol. Microbiol.
53: 577-582
[Abstract]
[Full Text]
-
Romanenko, L. A., Zhukova, N. V., Rohde, M., Lysenko, A. M., Mikhailov, V. V., Stackebrandt, E.
(2003). Pseudoalteromonas agarivorans sp. nov., a novel marine agarolytic bacterium. Int. J. Syst. Evol. Microbiol.
53: 125-131
[Abstract]
[Full Text]
-
Baumann, L., Thao, M. L., Hess, J. M., Johnson, M. W., Baumann, P.
(2002). The Genetic Properties of the Primary Endosymbionts of Mealybugs Differ from Those of Other Endosymbionts of Plant Sap-Sucking Insects. Appl. Environ. Microbiol.
68: 3198-3205
[Abstract]
[Full Text]
-
Melcher, R. J., Apitz, S. E., Hemmingsen, B. B.
(2002). Impact of Irradiation and Polycyclic Aromatic Hydrocarbon Spiking on Microbial Populations in Marine Sediment for Future Aging and Biodegradability Studies. Appl. Environ. Microbiol.
68: 2858-2868
[Abstract]
[Full Text]
-
Tryfinopoulou, P., Tsakalidou, E., Nychas, G.-J. E.
(2002). Characterization of Pseudomonas spp. Associated with Spoilage of Gilt-Head Sea Bream Stored under Various Conditions. Appl. Environ. Microbiol.
68: 65-72
[Abstract]
[Full Text]
-
Pernthaler, A., Pernthaler, J., Eilers, H., Amann, R.
(2001). Growth Patterns of Two Marine Isolates: Adaptations to Substrate Patchiness?. Appl. Environ. Microbiol.
67: 4077-4083
[Abstract]
[Full Text]
-
Cook, M. A., Osborn, A. M., Bettandorff, J., Sobecky, P. A.
(2001). Endogenous isolation of replicon probes for assessing plasmid ecology of marine sediment microbial communities. Microbiology
147: 2089-2101
[Abstract]
[Full Text]
-
von Graevenitz, A., Bowman, J., Del Notaro, C., Ritzler, M.
(2000). Human Infection with Halomonas venusta following Fish Bite. J. Clin. Microbiol.
38: 3123-3124
[Abstract]
[Full Text]
-
Dang, H., Lovell, C. R.
(2000). Bacterial Primary Colonization and Early Succession on Surfaces in Marine Waters as Determined by Amplified rRNA Gene Restriction Analysis and Sequence Analysis of 16S rRNA Genes. Appl. Environ. Microbiol.
66: 467-475
[Abstract]
[Full Text]
-
Glöckner, F. O., Fuchs, B. M., Amann, R.
(1999). Bacterioplankton Compositions of Lakes and Oceans: a First Comparison Based on Fluorescence In Situ Hybridization. Appl. Environ. Microbiol.
65: 3721-3726
[Abstract]
[Full Text]
-
Acinas, S. G., Antón, J., Rodríguez-Valera, F.
(1999). Diversity of Free-Living and Attached Bacteria in Offshore Western Mediterranean Waters as Depicted by Analysis of Genes Encoding 16S rRNA. Appl. Environ. Microbiol.
65: 514-522
[Abstract]
[Full Text]
-
Vera, J., Alvarez, R., Murano, E., Slebe, J. C., Leon, O.
(1998). Identification of a Marine Agarolytic Pseudoalteromonas Isolate and Characterization of Its Extracellular Agarase. Appl. Environ. Microbiol.
64: 4378-4383
[Abstract]
[Full Text]
Copyright © 1972 by the American Society for Microbiology. All rights reserved.