J Bacteriol. 1988 August; 170(8): 3584-3592
Evolutionary relationships among cyanobacteria and green chloroplasts.
S J Giovannoni,
S Turner,
G J Olsen,
S Barns,
D J Lane and
N R Pace
Department of Biology, Indiana University, Bloomington 47405.
ABSTRACT
The 16S rRNAs from 29 cyanobacteria and the cyanelle of the phytoflagellate Cyanophora paradoxa were partially sequenced by a dideoxynucleotide-terminated, primer extension method. A least-squares distance matrix analysis was used to infer phylogenetic trees that include green chloroplasts (those of euglenoids, green algae, and higher plants). The results indicate that many diverse forms of cyanobacteria diverged within a short span of evolutionary distance. Evolutionary depth within the surveyed cyanobacteria is substantially less than that separating the major eubacterial taxa, as though cyanobacterial diversification occurred significantly after the appearance of the major eubacterial groups. Three of the five taxonomic sections defined by Rippka et al. (R. Rippka, J. Deruelles, J. B. Waterbury, M. Herdman, and R. Y. Stanier, J. Gen. Microbiol. 111:1-61, 1979) (sections II [pleurocapsalean], IV [heterocystous, filamentous, nonbranching], and V [heterocystous, filamentous, branching]) are phylogenetically coherent. However, the other two sections (I [unicellular] and III [nonheterocystous, filamentous]) are intermixed and hence are not natural groupings. Our results not only support the conclusion of previous workers that the cyanobacteria and green chloroplasts form a coherent phylogenetic group but also suggest that the chloroplast lineage, which includes the cyanelle of C. paradoxa, is not just a sister group to the free-living forms but rather is contained within the cyanobacterial radiation.
J Bacteriol. 1988 August; 170(8): 3584-3592
This article has been cited by other articles:
-
Swingley, W. D., Blankenship, R. E., Raymond, J.
(2008). Integrating Markov Clustering and Molecular Phylogenetics to Reconstruct the Cyanobacterial Species Tree from Conserved Protein Families. Mol Biol Evol
25: 643-654
[Abstract]
[Full Text]
-
Walker, J. J., Pace, N. R.
(2007). Phylogenetic Composition of Rocky Mountain Endolithic Microbial Ecosystems. Appl. Environ. Microbiol.
73: 3497-3504
[Abstract]
[Full Text]
-
Palinska, K. A., Thomasius, C. F., Marquardt, J., Golubic, S.
(2006). Phylogenetic evaluation of cyanobacteria preserved as historic herbarium exsiccata.. Int. J. Syst. Evol. Microbiol.
56: 2253-2263
[Abstract]
[Full Text]
-
Zhaxybayeva, O., Gogarten, J. P., Charlebois, R. L., Doolittle, W. F., Papke, R. T.
(2006). Phylogenetic analyses of cyanobacterial genomes: Quantification of horizontal gene transfer events. Genome Res.
16: 1099-1108
[Abstract]
[Full Text]
-
Tomitani, A., Knoll, A. H., Cavanaugh, C. M., Ohno, T.
(2006). The evolutionary diversification of cyanobacteria: Molecular-phylogenetic and paleontological perspectives. Proc. Natl. Acad. Sci. USA
103: 5442-5447
[Abstract]
[Full Text]
-
Castiglioni, B., Rizzi, E., Frosini, A., Sivonen, K., Rajaniemi, P., Rantala, A., Mugnai, M. A., Ventura, S., Wilmotte, A., Boutte, C., Grubisic, S., Balthasart, P., Consolandi, C., Bordoni, R., Mezzelani, A., Battaglia, C., De Bellis, G.
(2004). Development of a Universal Microarray Based on the Ligation Detection Reaction and 16S rRNA Gene Polymorphism To Target Diversity of Cyanobacteria. Appl. Environ. Microbiol.
70: 7161-7172
[Abstract]
[Full Text]
-
Valladares, A., Muro-Pastor, A. M., Herrero, A., Flores, E.
(2004). The NtcA-Dependent P1 Promoter Is Utilized for glnA Expression in N2-Fixing Heterocysts of Anabaena sp. Strain PCC 7120. J. Bacteriol.
186: 7337-7343
[Abstract]
[Full Text]
-
Gugger, M. F., Hoffmann, L.
(2004). Polyphyly of true branching cyanobacteria (Stigonematales). Int. J. Syst. Evol. Microbiol.
54: 349-357
[Abstract]
[Full Text]
-
Henson, B. J., Hesselbrock, S. M., Watson, L. E., Barnum, S. R.
(2004). Molecular phylogeny of the heterocystous cyanobacteria (subsections IV and V) based on nifD. Int. J. Syst. Evol. Microbiol.
54: 493-497
[Abstract]
[Full Text]
-
Gupta, R. S., Pereira, M., Chandrasekera, C., Johari, V.
(2003). Molecular signatures in protein sequences that are characteristic of cyanobacteria and plastid homologues. Int. J. Syst. Evol. Microbiol.
53: 1833-1842
[Abstract]
[Full Text]
-
Frias, J. E., Herrero, A., Flores, E.
(2003). Open Reading Frame all0601 from Anabaena sp. Strain PCC 7120 Represents a Novel Gene, cnaT, Required for Expression of the Nitrate Assimilation nir Operon. J. Bacteriol.
185: 5037-5044
[Abstract]
[Full Text]
-
Winkler, U., Saftel, W., Stabenau, H.
(2003). A New Type of a Multifunctional beta -Oxidation Enzyme in Euglena. Plant Physiol.
131: 753-762
[Abstract]
[Full Text]
-
Ernst, A., Becker, S., Wollenzien, U. I. A., Postius, C.
(2003). Ecosystem-dependent adaptive radiations of picocyanobacteria inferred from 16S rRNA and ITS-1 sequence analysis. Microbiology
149: 217-228
[Abstract]
[Full Text]
-
Iteman, I., Rippka, R., Tandeau de Marsac, N., Herdman, M.
(2002). rDNA analyses of planktonic heterocystous cyanobacteria, including members of the genera Anabaenopsis and Cyanospira. Microbiology
148: 481-496
[Abstract]
[Full Text]
-
Miller, S. R., Castenholz, R. W.
(2001). Ecological Physiology of Synechococcus sp. Strain SH-94-5, a Naturally Occurring Cyanobacterium Deficient in Nitrate Assimilation. Appl. Environ. Microbiol.
67: 3002-3009
[Abstract]
[Full Text]
-
Boyer, S. L., Flechtner, V. R., Johansen, J. R.
(2001). Is the 16S-23S rRNA Internal Transcribed Spacer Region a Good Tool for Use in Molecular Systematics and Population Genetics? A Case Study in Cyanobacteria. Mol Biol Evol
18: 1057-1069
[Abstract]
[Full Text]
-
Rudi, K., Skulberg, O. M., Skulberg, R., Jakobsen, K. S.
(2000). Application of Sequence-Specific Labeled 16S rRNA Gene Oligonucleotide Probes for Genetic Profiling of Cyanobacterial Abundance and Diversity by Array Hybridization. Appl. Environ. Microbiol.
66: 4004-4011
[Abstract]
[Full Text]
-
Iteman, I., Rippka, R., Tandeau de Marsac, N., Herdman, M.
(2000). Comparison of conserved structural and regulatory domains within divergent 16S rRNA-23S rRNA spacer sequences of cyanobacteria. Microbiology
146: 1275-1286
[Abstract]
[Full Text]
-
Everett, K. D. E., Kahane, S., Bush, R. M., Friedman, M. G.
(1999). An Unspliced Group I Intron in 23S rRNA Links Chlamydiales, Chloroplasts, and Mitochondria. J. Bacteriol.
181: 4734-4740
[Abstract]
[Full Text]
-
Neilan, B. A., Dittmann, E., Rouhiainen, L., Bass, R. A., Schaub, V., Sivonen, K., Börner, T.
(1999). Nonribosomal Peptide Synthesis and Toxigenicity of Cyanobacteria. J. Bacteriol.
181: 4089-4097
[Abstract]
[Full Text]
-
Mooney, B. P., Miernyk, J. A., Randall, D. D.
(1999). Cloning and Characterization of the Dihydrolipoamide S-Acetyltransferase Subunit of the Plastid Pyruvate Dehydrogenase Complex (E2) from Arabidopsis. Plant Physiol.
120: 443-452
[Abstract]
[Full Text]
-
Schönhuber, W., Zarda, B., Eix, S., Rippka, R., Herdman, M., Ludwig, W., Amann, R.
(1999). In Situ Identification of Cyanobacteria with Horseradish Peroxidase-Labeled, rRNA-Targeted Oligonucleotide Probes. Appl. Environ. Microbiol.
65: 1259-1267
[Abstract]
[Full Text]
-
Ward, D. M., Ferris, M. J., Nold, S. C., Bateson, M. M.
(1998). A Natural View of Microbial Biodiversity within Hot Spring Cyanobacterial Mat Communities. Microbiol. Mol. Biol. Rev.
62: 1353-1370
[Abstract]
[Full Text]
-
Montesinos, M. L., Muro-Pastor, A. M., Herrero, A., Flores, E.
(1998). Ammonium/Methylammonium Permeases of a Cyanobacterium. IDENTIFICATION AND ANALYSIS OF THREE NITROGEN-REGULATED amt GENES IN SYNECHOCYSTIS sp. PCC 6803. J. Biol. Chem.
273: 31463-31470
[Abstract]
[Full Text]
-
Jiang, F., Hellman, U., Sroga, G. E., Bergman, B., Mannervik, B.
(1995). Cloning, Sequencing, and Regulation of the Glutathione Reductase Gene from the Cyanobacterium Anabaena PCC 7120. J. Biol. Chem.
270: 22882-22889
[Abstract]
[Full Text]
-
Knoll, A.
(1992). The early evolution of eukaryotes: a geological perspective. Science
256: 622-627
[Abstract]
-
Xu, M., Kathe, S., Goodrich-Blair, H, Nierzwicki-Bauer, S., Shub, D.
(1990). Bacterial origin of a chloroplast intron: conserved self-splicing group I introns in cyanobacteria. Science
250: 1566-1570
[Abstract]
-
Kuhsel, M., Strickland, R, Palmer, J.
(1990). An ancient group I intron shared by eubacteria and chloroplasts. Science
250: 1570-1573
[Abstract]
Copyright © 1988 by the American Society for Microbiology. All rights reserved.