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Journal of Bacteriology, December 1998, p. 6173-6186, Vol. 180, No. 23
Department of Biochemistry, Purdue
University, West Lafayette, Indiana 47907
Received 18 May 1998/Accepted 24 September 1998
The tpl gene of Citrobacter freundii
encodes an enzyme that catalyzes the conversion of
L-tyrosine to phenol, pyruvate, and ammonia. This gene is
known to be positively regulated by TyrR. The amplitude of regulation
attributable to this transcription factor is at least 20-fold. Three
TyrR binding sites, designated boxes A, B, and C, centered at
coordinates
0021-9193/98/$04.00+0
Copyright © 1998, American Society for Microbiology. All rights reserved.
Integration Host Factor and Cyclic AMP Receptor
Protein Are Required for TyrR-Mediated Activation of tpl in
Citrobacter freundii
and
272.5,
158.5, and
49.5, respectively, were identified
in the upstream region of the tpl promoter. The results of
mutational experiments suggest that TyrR binds in cooperative fashion
to these sites. The nonavailability of any TyrR site impairs
transcription. Full TyrR-mediated activation of tpl
required integration host factor (IHF) and the cAMP receptor protein
(CRP). By DNase I footprinting, it was shown that the IHF binding site
is centered at coordinate
85 and that there are CRP binding sites
centered at coordinates
220 and
250. Mutational alteration of the
IHF binding site reduced the efficiency of the tpl promoter
by at least eightfold. The proposed roles of CRP and IHF are to
introduce bends into tpl promoter DNA between boxes A and B
or B and C. Multimeric TyrR dimers were demonstrated by a chemical
cross-linking method. The formation of hexameric TyrR increased when
tpl DNA was present. The participation of both IHF and CRP
in the activation of the tpl promoter suggests that molecular mechanisms quite different from those that affect other TyrR-activated promoters apply to this system. A model wherein TyrR,
IHF, and CRP collaborate to regulate the expression of the tpl promoter is presented.
*
Corresponding author. Mailing address: Department of
Biochemistry, Purdue University, West Lafayette, IN 47907. Phone: (765) 494-1614. Fax: (765) 494-7897. E-mail:
somerville{at}biochem.purdue.edu.
Present address: Department of Medical Genetics and Biochemistry,
University of Pittsburgh, Pittsburgh, PA.
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