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J Bacteriol, April 1998, p. 1822-1830, Vol. 180, No. 7
Department of Human Genetics and Howard
Hughes Medical Institute, University of Utah, Salt Lake City, Utah
84112
Received 2 October 1997/Accepted 30 January 1998
Ribosomes translating bacteriophage T4 gene 60 mRNA
bypass 50 noncoding nucleotides from a takeoff site at codon 46 to a
landing site just upstream of codon 47. A key signal for efficient
bypassing is contained within the nascent peptide synthesized prior to
takeoff. Here we show that this signal is insensitive to the addition
of coding information at its N terminus. In addition, analysis of amino-terminal fusions, which allow detection of all major products synthesized from the gene 60 mRNA, show that 50% of
ribosomes bypass the coding gap while the rest either terminate at a
UAG stop codon immediately following codon 46 or fail to resume coding. Bypassing efficiency estimates significantly lower than 50% were obtained with enzymatic reporter systems that relied on comparing test
constructs to constructs with a precise excision of the gap (gap
deletion). Further analysis showed that these estimates are distorted
by differences between test and gap deletion functional mRNA levels. An
internal translation initiation site at Met12 of gene 60 (which eliminates part of the essential nascent peptide) also distorts
these estimates. Together, these results support an efficiency estimate
of ~50%, less than previously reported. This estimate suggests that
bypassing efficiency is determined by the competition between reading
signals and release factors and gives new insight into the kinetics of
bypassing signal action.
0021-9193/98/$04.00+0
Copyright © 1998, American Society for Microbiology. All rights reserved.
Efficiency of T4 Gene 60 Translational Bypassing
and
*
Corresponding author. Mailing address: 6160 Eccles
Institute of Human Genetics, University of Utah, Salt Lake City, UT
84112. Phone: (801) 581-5192. Fax: (801) 585-3910. E-mail:
aherr{at}genetics.utah.edu.
Present address: Area de Genetica, Dpto. Biotecnologia, Universidad
de Alicante, 03080 Alicante, Spain.
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