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Journal of Bacteriology, August 1999, p. 5051-5059, Vol. 181, No. 16
0021-9193/99/$04.00+0
Copyright © 1999, American Society for Microbiology. All rights reserved.

Proton-Nuclear Magnetic Resonance Analyses of the Substrate Specificity of a beta -Ketolase from Pseudomonas putida, Acetopyruvate Hydrolasedagger

Diana Pokorny,1 Lothar Brecker,2 Mateja Pogorevc,1,3 Walter Steiner,1 Herfried Griengl,2 Thomas Kappe,3 and Douglas W. Ribbons1,2,*

Institute of Biotechnology1 and Institute of Organic Chemistry,2 Technical University Graz, and Institute of Organic Chemistry, Karl-Franzens-University Graz,3 A-8010 Graz, Austria

Received 13 November 1998/Accepted 25 May 1999

A revised purification of acetopyruvate hydrolase from orcinol-grown Pseudomonas putida ORC is described. This carbon-carbon bond hydrolase, which is the last inducible enzyme of the orcinol catabolic pathway, is monomeric with a molecular size of ~38 kDa; it hydrolyzes acetopyruvate to equimolar quantities of acetate and pyruvate. We have previously described the aqueous-solution structures of acetopyruvate at pH 7.5 and several synthesized analogues by 1H-nuclear magnetic resonance (NMR)-Fourier transform (FT) experiments. Three 1H signals (2.2 to 2.4 ppm) of the methyl group are assigned unambiguously to the carboxylate anions of 2,4-diketo, 2-enol-4-keto, and 2-hydrate-4-keto forms (40:50:10). A 1H-NMR assay for acetopyruvate hydrolase was used to study the kinetics and stoichiometries of reactions within a single reaction mixture (0.7 ml) by monitoring the three methyl-group signals of acetopyruvate and of the products acetate and pyruvate. Examination of 4-tert-butyl-2,4-diketobutanoate hydrolysis by the same method allowed the conclusion that it is the carboxylate 2-enol form(s) or carbanion(s) that is the actual substrate(s) of hydrolysis. Substrate analogues of 2,4-diketobutanoate with 4-phenyl or 4-benzyl groups are very poor substrates for the enzyme, whereas the 4-cyclohexyl analogue is readily hydrolyzed. In aqueous solution, the arene analogues do not form a stable 2-enol structure but exist principally as a delocalized pi -electron system in conjugation with the aromatic ring. The effects of several divalent metal ions on solution structures were studied, and a tentative conclusion that the enol forms are coordinated to Mg2+ bound to the enzyme was made. 1H-2H exchange reactions showed the complete, fast equilibration of 2H into the C-3 of acetopyruvate chemically; this accounts for the appearance of 2H in the product pyruvate. The C-3 of the product pyruvate was similarly labelled, but this exchange was only enzyme catalyzed; the methyl group of acetate did not undergo an exchange reaction. The unexpected preference for bulky 4-alkyl-group analogues is discussed in an evolutionary context for carbon-carbon bond hydrolases. Routine one-dimensional 1H-NMR in normal 1H2O is a new method for rapid, noninvasive assays of enzymic activities to obtain the kinetics and stoichiometries of reactions in single reaction mixtures. Assessments of the solution structures of both substrates and products are also shown.


* Corresponding author. Mailing address: Institute of Organic Chemistry, Technical University Graz, Stremayrgasse 16, A-8010 Graz, Austria. Phone: 43-316 873 8240. Fax: 43-316 873 8740. E-mail: sekretariat{at}orgc.tu-graz.ac-at.

dagger This paper is dedicated to Robert McLafferty on the occasion of his 70th birthday.


Journal of Bacteriology, August 1999, p. 5051-5059, Vol. 181, No. 16
0021-9193/99/$04.00+0
Copyright © 1999, American Society for Microbiology. All rights reserved.



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