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Journal of Bacteriology, September 1999, p. 5725-5733, Vol. 181, No. 18
0021-9193/99/$04.00+0
Copyright © 1999, American Society for Microbiology. All rights reserved.

Bacterial 2,4-Dioxygenases: New Members of the alpha /beta Hydrolase-Fold Superfamily of Enzymes Functionally Related to Serine Hydrolases

Frank Fischer, Stefan Künne, and Susanne Fetzner*

Mikrobiologie, Fachbereich 7, Carl von Ossietzky Universität Oldenburg, Oldenburg, Germany

Received 31 March 1999/Accepted 17 June 1999

1H-3-hydroxy-4-oxoquinoline 2,4-dioxygenase (Qdo) from Pseudomonas putida 33/1 and 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase (Hod) from Arthrobacter ilicis Rü61a catalyze an N-heterocyclic-ring cleavage reaction, generating N-formylanthranilate and N-acetylanthranilate, respectively, and carbon monoxide. Amino acid sequence comparisons between Qdo, Hod, and a number of proteins belonging to the alpha /beta hydrolase-fold superfamily of enzymes and analysis of the similarity between the predicted secondary structures of the 2,4-dioxygenases and the known secondary structure of haloalkane dehalogenase from Xanthobacter autotrophicus GJ10 strongly suggested that Qdo and Hod are structurally related to the alpha /beta hydrolase-fold enzymes. The residues S95 and H244 of Qdo were found to be arranged like the catalytic nucleophilic residue and the catalytic histidine, respectively, of the alpha /beta hydrolase-fold enzymes. Investigation of the potential functional significance of these and other residues of Qdo through site-directed mutagenesis supported the hypothesis that Qdo is structurally as well as functionally related to serine hydrolases, with S95 being a possible catalytic nucleophile and H244 being a possible catalytic base. A hypothetical reaction mechanism for Qdo-catalyzed 2,4-dioxygenolysis, involving formation of an ester bond between the catalytic serine residue and the carbonyl carbon of the substrate and subsequent dioxygenolysis of the covalently bound anionic intermediate, is discussed.


* Corresponding author. Mailing address: Department of Microbiology, FB 7, Carl von Ossietzky-University of Oldenburg, P.O. Box 2503, D-26111 Oldenburg, Germany. Phone: 49 (0)441-7983295. Fax: 49 (0)441-7983250. E-mail: fetzner{at}hrz2.uni-oldenburg.de.


Journal of Bacteriology, September 1999, p. 5725-5733, Vol. 181, No. 18
0021-9193/99/$04.00+0
Copyright © 1999, American Society for Microbiology. All rights reserved.



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