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Journal of Bacteriology, January 2001, p. 347-357, Vol. 183, No. 1
Biology Department, Massachusetts Institute
of Technology, Cambridge, Massachusetts 02139
Received 10 July 2000/Accepted 4 October 2000
Most translesion DNA synthesis (TLS) in Escherichia
coli is dependent upon the products of the umuDC
genes, which encode a DNA polymerase, DNA polymerase V, with the unique
ability to replicate over a variety of DNA lesions, including
cyclobutane dimers and abasic sites. The UmuD protein is activated for
its role in TLS by a RecA-single-stranded DNA
(ssDNA)-facilitated self-cleavage event that serves to remove
its amino-terminal 24 residues to yield UmuD'. We have used
site-directed mutagenesis to construct derivatives of UmuD and UmuD'
with glycines in place of leucine-101 and arginine-102. These residues
are extremely well conserved among the UmuD-like proteins involved in
mutagenesis but are poorly conserved among the structurally related
LexA-like transcriptional repressor proteins. Based on both the crystal
and solution structures of the UmuD' homodimer, these residues are part
of a solvent-exposed loop. Our genetic and biochemical
characterizations of these mutant UmuD and UmuD' proteins indicate that
while leucine-101 and arginine-102 are critical for the
RecA-ssDNA-facilitated self-cleavage of UmuD, they serve only a minimal
role in enabling TLS. These results, and others, suggest that the
interaction of RecA-ssDNA with leucine-101 and arginine-102, together
with numerous other contacts between UmuD2 and the
RecA-ssDNA nucleoprotein filaments, serves to realign lysine-97
relative to serine-60, thereby activating UmuD2 for self-cleavage.
0021-9193/01/$04.00+0 DOI: 10.1128/JB.183.1.347-357.2001
Copyright © 2001, American Society for Microbiology. All rights reserved.
Genetic and Biochemical Characterization of a Novel
umuD Mutation: Insights into a Mechanism for UmuD
Self-Cleavage
and
*
Corresponding author. Mailing address: Biology
Department, Massachusetts Institute of Technology, Cambridge, MA 02139. Phone: (617) 253-6716. Fax: (617) 253-2643. E-mail:
gwalker{at}MIT.EDU.
Present address: U.S.C. Keck School of Medicine, Los Angeles,
CA 90033.
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