Previous Article | Next Article 
Journal of Bacteriology, November 2001, p. 6288-6293, Vol. 183, No. 21
0021-9193/01/$04.00+0 DOI: 10.1128/JB.183.21.6288-6293.2001
Copyright © 2001, American Society for Microbiology. All rights reserved.
DNA as a Nutrient: Novel Role for Bacterial
Competence Gene Homologs
Steven E.
Finkel1,* and
Roberto
Kolter2
Department of Biological Sciences, University
of Southern California, Los Angeles, California
90089-1340,1 and Department of
Microbiology and Molecular Genetics, Harvard Medical School,
Boston, Massachusetts 021152
Received 5 April 2001/Accepted 7 August 2001
The uptake and stable maintenance of extracellular DNA, genetic
transformation, is universally recognized as a major force in microbial
evolution. We show here that extracellular DNA, both homospecific and
heterospecific, can also serve as the sole source of carbon and energy
supporting microbial growth. Mutants unable to consume DNA suffer a
significant loss of fitness during stationary-phase competition. In
Escherichia coli, the use of DNA as a nutrient depends
on homologs of proteins involved in natural genetic competence and
transformation in Haemophilus influenzae and
Neisseria gonorrhoeae. Homologs of these E.
coli genes are present in many members of the
subclass of
Proteobacteria, suggesting that the mechanisms for
consumption of DNA may have been widely conserved during evolution.
*
Corresponding author. Mailing address: Department of
Biological Sciences, Program in Molecular Biology, SHS 172, University of Southern California, Los Angeles, CA 90089-1340. Phone: (213) 821-1498. Fax: (213) 740-8631. E-mail: sfinkel{at}usc.edu.
Journal of Bacteriology, November 2001, p. 6288-6293, Vol. 183, No. 21
0021-9193/01/$04.00+0 DOI: 10.1128/JB.183.21.6288-6293.2001
Copyright © 2001, American Society for Microbiology. All rights reserved.
This article has been cited by other articles:
-
Palchevskiy, V., Finkel, S. E.
(2009). A Role for Single-Stranded Exonucleases in the Use of DNA as a Nutrient. J. Bacteriol.
191: 3712-3716
[Abstract]
[Full Text]
-
Johnsen, P. J., Dubnau, D., Levin, B. R.
(2009). Episodic Selection and the Maintenance of Competence and Natural Transformation in Bacillus subtilis. Genetics
181: 1521-1533
[Abstract]
[Full Text]
-
Tetz, G. V., Artemenko, N. K., Tetz, V. V.
(2009). Effect of DNase and Antibiotics on Biofilm Characteristics. Antimicrob. Agents Chemother.
53: 1204-1209
[Abstract]
[Full Text]
-
Sun, D., Zhang, X., Wang, L., Prudhomme, M., Xie, Z., Martin, B., Claverys, J.-P.
(2009). Transforming DNA Uptake Gene Orthologs Do Not Mediate Spontaneous Plasmid Transformation in Escherichia coli. J. Bacteriol.
191: 713-719
[Abstract]
[Full Text]
-
Kowalko, J. E., Sebert, M. E.
(2008). The Streptococcus pneumoniae Competence Regulatory System Influences Respiratory Tract Colonization. Infect. Immun.
76: 3131-3140
[Abstract]
[Full Text]
-
Singh, A. H., Wolf, D. M., Wang, P., Arkin, A. P.
(2008). Modularity of stress response evolution. Proc. Natl. Acad. Sci. USA
105: 7500-7505
[Abstract]
[Full Text]
-
Palmer, K. L., Aye, L. M., Whiteley, M.
(2007). Nutritional Cues Control Pseudomonas aeruginosa Multicellular Behavior in Cystic Fibrosis Sputum. J. Bacteriol.
189: 8079-8087
[Abstract]
[Full Text]
-
Uzureau, S., Godefroid, M., Deschamps, C., Lemaire, J., De Bolle, X., Letesson, J.-J.
(2007). Mutations of the Quorum Sensing-Dependent Regulator VjbR Lead to Drastic Surface Modifications in Brucella melitensis. J. Bacteriol.
189: 6035-6047
[Abstract]
[Full Text]
-
Lennon, J. T.
(2007). Diversity and Metabolism of Marine Bacteria Cultivated on Dissolved DNA. Appl. Environ. Microbiol.
73: 2799-2805
[Abstract]
[Full Text]
-
DeMars, R., Weinfurter, J., Guex, E., Lin, J., Potucek, Y.
(2007). Lateral Gene Transfer In Vitro in the Intracellular Pathogen Chlamydia trachomatis. J. Bacteriol.
189: 991-1003
[Abstract]
[Full Text]
-
Bacher, J. M., Metzgar, D., de Crecy-Lagard, V.
(2006). Rapid Evolution of Diminished Transformability in Acinetobacter baylyi. J. Bacteriol.
188: 8534-8542
[Abstract]
[Full Text]
-
Cameron, A. D. S., Redfield, R. J.
(2006). Non-canonical CRP sites control competence regulons in Escherichia coli and many other {gamma}-proteobacteria. Nucleic Acids Res
34: 6001-6014
[Abstract]
[Full Text]
-
Rath, D., Jawali, N.
(2006). Loss of Expression of cspC, a Cold Shock Family Gene, Confers a Gain of Fitness in Escherichia coli K-12 Strains.. J. Bacteriol.
188: 6780-6785
[Abstract]
[Full Text]
-
Abranches, J., Candella, M. M., Wen, Z. T., Baker, H. V., Burne, R. A.
(2006). Different Roles of EIIABMan and EIIGlc in Regulation of Energy Metabolism, Biofilm Development, and Competence in Streptococcus mutans. J. Bacteriol.
188: 3748-3756
[Abstract]
[Full Text]
-
Palchevskiy, V., Finkel, S. E.
(2006). Escherichia coli Competence Gene Homologs Are Essential for Competitive Fitness and the Use of DNA as a Nutrient. J. Bacteriol.
188: 3902-3910
[Abstract]
[Full Text]
-
Maruyama, F., Kenzaka, T., Yamaguchi, N., Tani, K., Nasu, M.
(2005). Visualization and Enumeration of Bacteria Carrying a Specific Gene Sequence by In Situ Rolling Circle Amplification. Appl. Environ. Microbiol.
71: 7933-7940
[Abstract]
[Full Text]
-
Steinberger, R. E., Holden, P. A.
(2005). Extracellular DNA in Single- and Multiple-Species Unsaturated Biofilms. Appl. Environ. Microbiol.
71: 5404-5410
[Abstract]
[Full Text]
-
van der Ploeg, J. R.
(2005). Regulation of Bacteriocin Production in Streptococcus mutans by the Quorum-Sensing System Required for Development of Genetic Competence. J. Bacteriol.
187: 3980-3989
[Abstract]
[Full Text]
-
Haft, D. H., Selengut, J. D., Brinkac, L. M., Zafar, N., White, O.
(2005). Genome Properties: a system for the investigation of prokaryotic genetic content for microbiology, genome annotation and comparative genomics. Bioinformatics
21: 293-306
[Abstract]
[Full Text]
-
Silby, M. W., Levy, S. B.
(2004). Use of In Vivo Expression Technology To Identify Genes Important in Growth and Survival of Pseudomonas fluorescens Pf0-1 in Soil: Discovery of Expressed Sequences with Novel Genetic Organization. J. Bacteriol.
186: 7411-7419
[Abstract]
[Full Text]
-
Trotochaud, A. E., Wassarman, K. M.
(2004). 6S RNA Function Enhances Long-Term Cell Survival. J. Bacteriol.
186: 4978-4985
[Abstract]
[Full Text]
-
Farrell, M. J., Finkel, S. E.
(2003). The Growth Advantage in Stationary-Phase Phenotype Conferred by rpoS Mutations Is Dependent on the pH and Nutrient Environment. J. Bacteriol.
185: 7044-7052
[Abstract]
[Full Text]
-
Brandenburg, J. L., Wray, L. V. Jr., Beier, L., Jarmer, H., Saxild, H. H., Fisher, S. H.
(2002). Roles of PucR, GlnR, and TnrA in Regulating Expression of the Bacillus subtilisure P3 Promoter. J. Bacteriol.
184: 6060-6064
[Abstract]
[Full Text]
-
Kolenbrander, P. E., Andersen, R. N., Blehert, D. S., Egland, P. G., Foster, J. S., Palmer, R. J. Jr.
(2002). Communication among Oral Bacteria. Microbiol. Mol. Biol. Rev.
66: 486-505
[Abstract]
[Full Text]
-
Britton, R. A., Eichenberger, P., Gonzalez-Pastor, J. E., Fawcett, P., Monson, R., Losick, R., Grossman, A. D.
(2002). Genome-Wide Analysis of the Stationary-Phase Sigma Factor (Sigma-H) Regulon of Bacillus subtilis. J. Bacteriol.
184: 4881-4890
[Abstract]
[Full Text]
-
Ween, O., Teigen, S., Gaustad, P., Kilian, M., Havarstein, L. S.
(2002). Competence without a Competence Pheromone in a Natural Isolate of Streptococcus infantis. J. Bacteriol.
184: 3426-3432
[Abstract]
[Full Text]
-
Wang, Y., Goodman, S. D., Redfield, R. J., Chen, C.
(2002). Natural Transformation and DNA Uptake Signal Sequences in Actinobacillus actinomycetemcomitans. J. Bacteriol.
184: 3442-3449
[Abstract]
[Full Text]