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Journal of Bacteriology, May 2002, p. 2626-2633, Vol. 184, No. 10
0021-9193/02/$04.00+0     DOI: 10.1128/JB.184.10.2626-2633.2002
Copyright © 2002, American Society for Microbiology. All Rights Reserved.

The Evolving Genome of Salmonella enterica Serovar Pullorum

Gui-Rong Liu,1,2 Andrea Rahn,3,{dagger} Wei-Qiao Liu,3 Kenneth E. Sanderson,3 Randal N. Johnston,4 and Shu-Lin Liu1,2*

Department of Microbiology and Infectious Diseases,1 Department of Biological Sciences,3 Department of Biochemistry and Molecular Biology, University of Calgary, Calgary, Alberta T2N 4N1, Canada,4 Department of Pathogenic Biology, Peking University Health Science Center, 100083 Beijing, China2

Received 20 December 2001/ Accepted 15 February 2002

Salmonella enterica serovar Pullorum is a fowl-adapted bacterial pathogen that causes dysentery (pullorum disease). Host adaptation and special pathogenesis make S. enterica serovar Pullorum an exceptionally good system for studies of bacterial evolution and speciation, especially regarding pathogen-host interactions and the acquisition of pathogenicity. We constructed a genome map of S. enterica serovar Pullorum RKS5078, using I-CeuI, XbaI, AvrII, and SpeI and Tn10 insertions. Pulsed-field gel electrophoresis was employed to separate the large DNA fragments generated by the endonucleases. The genome is 4,930 kb, which is similar to most salmonellas . However, the genome of S. enterica serovar Pullorum RKS5078 is organized very differently from the majority of salmonellas, with three major inversions and one translocation. This extraordinary genome structure was seen in most S. enterica serovar Pullorum strains examined, with different structures in a minority of S. enterica serovar Pullorum strains. We describe the coexistence of different genome structures among the same bacteria as genomic plasticity. Through comparisons with S. enterica serovar Typhimurium, we resolved seven putative insertions and eight deletions ranging in size from 12 to 157 kb. The genomic plasticity seen among S. enterica serovar Pullorum strains supported our hypothesis about its association with bacterial evolution: a large genomic insertion (157 kb in this case) disrupted the genomic balance, and rebalancing by independent recombination events in individual lineages resulted in diverse genome structures. As far as the structural plasticity exists, the S. enterica serovar Pullorum genome will continue evolving to reach a further streamlined and balanced structure.

* Corresponding author. Mailing address: Department of Microbiology and Infectious Diseases, University of Calgary, 3330 Hospital Dr. NW, Calgary, Alberta, T2N 4N1, Canada. Phone: (403) 220-3799. Fax: (403) 270-0834. E-mail: slliu{at}ucalgary.ca.

{dagger} Present address: Department of Microbiology, University of Guelph, Guelph, Ontario N1G 2W1, Canada.

Journal of Bacteriology, May 2002, p. 2626-2633, Vol. 184, No. 10
0021-9193/02/$04.00+0     DOI: 10.1128/JB.184.10.2626-2633.2002
Copyright © 2002, American Society for Microbiology. All Rights Reserved.



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