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Journal of Bacteriology, July 2003, p. 4066-4073, Vol. 185, No. 14
0021-9193/03/$08.00+0 DOI: 10.1128/JB.185.14.4066-4073.2003
Copyright © 2003, American Society for Microbiology. All Rights Reserved.
Institute of Biological Chemistry,1 Core Facility for Protein X-Ray Crystallography, Academia Sinica,2 Institute of Chemistry, National Taiwan University, Taipei, Taiwan3
Received 21 February 2003/ Accepted 23 April 2003
The crystal structure of a small, basic DNA binding protein, Sso10b2, from the thermoacidophilic archaeon Sulfolobus solfataricus was determined by the Zn multiwavelength anomalous diffraction method and refined to 1.85 Å resolution. The 89-amino-acid protein adopts a ß
ß
ßß topology. The structure is similar to that of Sso10b1 (also called Alba) from the same organism. However, Sso10b2 contains an arginine-rich loop RDRRR motif, which may play an important role in nucleic acid binding. There are two independent Sso10b2 proteins in the asymmetric unit, and a plausible stable dimer could be deduced from the crystal structure. Topology comparison revealed that Sso10b2 is similar to several RNA-binding proteins, including IF3-C, YhhP, and DNase I. Models of the Sso10b2 dimer bound to either B-DNA or A-DNA have been constructed.
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