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Journal of Bacteriology, May 2005, p. 3496-3501, Vol. 187, No. 10
0021-9193/05/$08.00+0     doi:10.1128/JB.187.10.3496-3501.2005
Copyright © 2005, American Society for Microbiology. All Rights Reserved.

Solution Structure of the Carbon Storage Regulator Protein CsrA from Escherichia coli

Pablo Gutiérrez, Yan Li, Michael J. Osborne, Ekaterina Pomerantseva, Qian Liu, and Kalle Gehring*

Department of Biochemistry, McGill University, 3655 Promenade Sir William Osler, Montreal, Quebec, Canada H3G 1Y6

Received 14 November 2004/ Accepted 11 February 2005

The carbon storage regulator A (CsrA) is a protein responsible for the repression of a variety of stationary-phase genes in bacteria. In this work, we describe the nuclear magnetic resonance (NMR)-based structure of the CsrA dimer and its RNA-binding properties. CsrA is a dimer of two identical subunits, each composed of five strands, a small {alpha}-helix and a flexible C terminus. NMR titration experiments suggest that the ß1-ß2 and ß3-ß4 loops and the C-terminal helix are important elements in RNA binding. Even though the ß3-ß4 loop contains a highly conserved RNA-binding motif, GxxG, typical of KH domains, our structure excludes CsrA from being a member of this protein family, as previously suggested. A mechanism for the recognition of mRNAs downregulated by CsrA is proposed.


* Corresponding author. Mailing address: Department of Biochemistry, McGill University, 3655 Promenade Sir William Osler, Montreal, Quebec, Canada H3G 1Y6. Phone: (514) 398-7287. Fax: (514) 398-7384. E-mail: kalle.gehring{at}mcgill.ca.


Journal of Bacteriology, May 2005, p. 3496-3501, Vol. 187, No. 10
0021-9193/05/$08.00+0     doi:10.1128/JB.187.10.3496-3501.2005
Copyright © 2005, American Society for Microbiology. All Rights Reserved.




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