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Vol. 180, Issue 13, 3312-3316, July 1, 1998
Purification and Properties of the
F1Fo ATPase of Ilyobacter
tartaricus, a Sodium Ion Pump
Sandra
Neumann,
Ulrich
Matthey,
Georg
Kaim, and
Peter
Dimroth*
Mikrobiologisches Institut,
Eidgenössische Technische Hochschule Zürich, CH-8092
Zürich, Switzerland
 |
ABSTRACT |
The ATPase of Ilyobacter tartaricus was solubilized
from the bacterial membranes and purified. Sodium dodecyl
sulfate-polyacrylamide gel electrophoresis of the purified enzyme
revealed the usual subunit pattern of a bacterial
F1Fo ATPase. The polypeptides with apparent
molecular masses of 56, 52, 35, 16.5, and 6.5 kDa were identified as
the
,
,
,
, and c subunits, respectively, by N-terminal
protein sequencing and comparison with the sequences of the
corresponding subunits from the Na+-translocating ATPase of
Propionigenium modestum. Two overlapping sequences were
obtained for the polypeptides moving with an apparent molecular mass of
22 kDa (tentatively assigned as b and
subunits). No sequence could
be determined for the putative a subunit (apparent molecular
mass, 25 kDa). The c subunits formed a strong aggregate with the
apparent molecular mass of 50 kDa which required treatment with
trichloroacetic acid for dissociation. The ATPase was inhibited by
dicyclohexyl carbodiimide, and Na+ ions protected the
enzyme from this inhibition. The ATPase was specifically activated
by Na+ or Li+ ions, markedly at high pH. After
reconstitution into proteoliposomes, the enzyme catalyzed the
ATP-dependent transport of Na+, Li+, or
H+. Proton transport was specifically inhibited by
Na+ or Li+ ions, indicating a competition
between these alkali ions and protons for binding and translocation
across the membrane. These experiments characterize the I. tartaricus ATPase as a new member of the family
of FS-ATPases, which use Na+ as the physiological
coupling ion for ATP synthesis.
 |
INTRODUCTION |
F1Fo ATPases
(ATP synthases) catalyze ATP synthesis in bacteria, mitochondria, or
chloroplasts under consumption of the free energy of a transmembrane
electrochemical gradient of protons or, in some cases,
Na+ ions (1-3, 19). Accordingly, the
proton- or sodium ion-translocating ATPases have been
classified as FP-ATPases and FS-ATPases, respectively (8). The water-soluble F1 part of these enzymes
catalyzes the hydrolysis of ATP and has the subunit composition
3
3

. The membrane-embedded
Fo component is responsible for the translocation of
the coupling ions across the membrane and in bacteria has the subunit
composition ab2c9-12. Except for the extended
coupling ion specificity, FS- and FP-ATPases are closely related
with respect to structure and function. This has been most impressively
demonstrated by the construction of functional hybrids between the
FP-ATPase of Escherichia coli and the FS-ATPase of
Propionigenium modestum (5, 15).
FS-ATPases are rare in nature, and until now, the only
well-characterized example is the enzyme from P. modestum (12-14). Another organism harboring a
Na+-translocating ATPase is Acetobacterium
woodii (17). As this enzyme was reported to consist of
only six instead of the usual eight subunits, its belonging to the
family of FS-ATPases remains to be proven.
Nevertheless, there is good reason to believe that P. modestum is not the only organism synthesizing an ATPase of
the FS type. A Na+-translocating
F1Fo ATPase is probably advantageous for
P. modestum, which thrives on ATP synthesis by the
µNa+ that is generated during succinate fermentation
by the methylmalonyl coenzyme A decarboxylase Na+ pump
(4). A related ATP synthesis mechanism may be
operating in Ilyobacter tartaricus, which is a close
relative to P. modestum (15a). The bacterium
grows from the fermentation of L-tartrate or citrate to
acetate, formate, and CO2 (18). Oxaloacetate, the first degradation product of both substrates, is probably further degraded to pyruvate by an oxaloacetate decarboxylase Na+ pump. This enzyme has been well characterized for
Klebsiella pneumoniae or Salmonella typhimurium,
where it participates in the fermentation of citrate or
L-tartrate (3). To investigate this possibility,
the F1Fo ATPase of I. tartaricus has been purified. The enzyme was characterized as an
FS-ATPase with clear relationships to that of P. modestum.
 |
MATERIALS AND METHODS |
Cell growth.
I. tartaricus (DSM 2382) was
grown anaerobically in a medium containing, per liter of
H2O, the following: 20 g of NaCl, 3 g of
MgCl2 · 6H2O, 0.5 g of KCl,
0.25 g of NH4Cl, 0.2 g of
KH2PO4, 0.15 g of CaCl2
· 2H2O, 2 g of L-tartrate,
2.5 g of NaHCO3, and 360 mg of Na2S
· 9H2O. The medium further contained trace element solution, seven-vitamin solution, and selenite-tungsten solution (20). Cells were usually grown at 30°C in gastight bottles
containing 1 liter of medium. For mass production of cells, 200 liters
of medium in a fermentor was inoculated with 5 liters of a well-grown culture. After 18 h of growth, the cells (~80 g [wet mass])
were collected by continuous centrifugation and frozen for storage in
liquid nitrogen.
ATPase purification.
The I. tartaricus
cells (5 g [wet mass]) were suspended in 15 ml of extraction buffer
(50 mM potassium phosphate [pH 8.0], 1 mM dithiothreitol; 0.1 mM
diisopropyl fluorophosphate, 0.1 mg of DNase I per ml). After
homogenization, the cells were disrupted by two passages through a
French pressure cell at 400 kPa (6,000 lb/in2). Unbroken
cells and large debris were removed by centrifugation (15 min,
7,700 × g). The supernatant was diluted to 25 ml with extraction buffer, and the membranes were sedimented by
ultracentrifugation (30 min, 145,000 × g). After the
membranes were washed with 25 ml of extraction buffer, they were
suspended in 10 ml of 50 mM MOPS (morpholinepropanesulfonic acid)-KOH
buffer, pH 7.0, containing 1% Triton X-100. After 15 min with
occasional mixing at 0°C, the solubilized membrane proteins were
isolated by ultracentrifugation (1 h, 200,000 × g).
The solubilized ATPase was supplied with 0.5 ml of 1 M
MgCl2. Contaminating proteins were precipitated with polyethylene glycol 6000 (approximately 0.4 ml of 50% [wt/wt] polyethylene glycol 6000 was added to 10 ml of enzyme solution). The
precipitate was removed by centrifugation (15 min, 39,000 × g) when 90% of the activity was still present in the
supernatant. To 10.5 ml of the supernatant, 1.5 ml of 50% polyethylene
glycol 6000 was added to precipitate the ATPase. This was collected
by centrifugation and dissolved in 1 ml of 5 mM potassium phosphate (pH
7.0) containing 1 mM dithiothreitol, 0.1 mM diisopropyl
fluorophosphate, and 0.05% Triton X-100. Insoluble material was
removed by centrifugation, and each 200 µl of the ATPase (0.4 to
0.5 mg) was subjected to gel chromatography (0.2 ml/min) with a
Superose-6 HR10/30 column preequilibrated with 50 mM potassium
phosphate-150 mM KCl-5 mM MgCl2-0.05% Triton X-100, pH
7.0.
Preparation of reconstituted proteoliposomes.
A suspension
of 60 mg of phosphatidylcholine (Sigma; Type II S) in 1.9 ml of 50 mM
potassium phosphate-1 mM MgCl2-1 mM dithiothreitol, pH
7.0, was sonicated twice for 1 min each in a water bath sonicator. Purified ATPase (0.1 ml; 0.2 to 0.3 mg of protein) was added to the
suspension, and the mixture was incubated for 10 min at 25°C with
occasional shaking, frozen in liquid nitrogen, and thawed within 1 h at 0°C. The proteoliposomes were sonicated twice for 5 s each,
collected by ultracentrifugation (50 min, 200,000 × g), and resuspended in 0.3 ml of 5 mM potassium phosphate
buffer, pH 7.0, containing 1 mM MgCl2.
Determination of ATPase activity.
ATPase activity
was determined by a coupled spectrophotometric assay. The reaction
mixture contained 50 mM potassium phosphate (pH 8.0) or 50 mM potassium
borate (pH 9.2), 100 mM K2SO4, 0.25 mM
dipotassium NADH, 3 mM potassium phosphoenolpyruvate, 15 U of lactate
dehydrogenase per ml, 10 U of pyruvate kinase per ml, 2.5 mM
Mg-ATP, and F1Fo-ATPase (10 to 50 mU/ml). In the case of the solubilized protein, 0.01% Triton X-100 was
added to the assay mixture. The reaction was started by addition of the
ATPase. NADH oxidation was continuously monitored at 340 nm.
Determination of proton transport.
Proton transport into
reconstituted proteoliposomes was measured by the quenching of
9-amino-6-chloro-2-methoxyacridine (ACMA). The reaction mixture
contained 5 mM potassium phosphate (pH 7.0), 5 mM MgCl2,
100 mM K2SO4, 1 µM ACMA, and 50 µl of
reconstituted proteoliposomes (7.5 mg of phospholipid) per ml. After
the fluorescence signal had stabilized, the reaction was started by the
addition of 1.7 mM ATP. Fluorescence was measured with an
excitation wavelength of 410 nm and an emission wavelength of 480 nm.
Determination of Na+ or Li+
transport.
Sodium ion transport into reconstituted proteoliposomes
was measured as described elsewhere (5). The reaction
mixture (0.75 ml) contained 5 mM potassium phosphate, 100 mM
K2SO4, 5 mM MgCl2, 6 mM potassium
phosphoenolpyruvate, 20 U of pyruvate kinase, 2 mM 22NaCl
(380 to 420 cpm/nmol), and 100 µl of proteoliposomes (10 mg of
lipid), pH 7.0. After 5 min, the transport was started by the addition
of 2.5 mM Mg-ATP. Samples of 90 µl were passed over Dowex 50 K+ columns at various times. The proteoliposomes were
eluted twice with 0.6 ml each of 2 mM Tricine-KOH (pH 7.0)-200 mM
sucrose-5 mM MgCl2. The amount of
22Na+ entrapped within the proteoliposomes was
subsequently determined by measuring the
radiation. For lithium ion
transport measurements, the reaction mixtures contained 2 mM LiCl
instead of 22NaCl. External Li+ ions were
removed by passing the reaction mixtures over Dowex 50 K+
columns, and the amount of Li+ entrapped inside the
proteoliposomes was subsequently determined by flame emission
spectroscopy.
 |
RESULTS AND DISCUSSION |
Purification of the F1Fo ATPase of
I. tartaricus.
The ATPase of I. tartaricus was isolated as described in Materials and Methods and
in Table 1. Figure 1 shows the subunit composition of the purified enzyme as determined by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE). The pattern is
typical for an F1Fo ATPase. According to
the molecular masses, the individual polypeptide bands could
tentatively be identified as ATPase subunits as follows:
(56 kDa),
(52 kDa),
(35 kDa),
(22 kDa),
(16.5 kDa), a (25 kDa), b (22 kDa), c (monomer) (6.5 kDa), and c (multimer) (50 kDa).
Individual subunits are well separated on the gel except for the
and b subunits, which probably move together in the 22-kDa band
(broadened on the Coomassie blue-stained gel). A polypeptide
with the size of monomeric subunit c was clearly seen, if the
ATPase was precipitated with trichloroacetic acid prior to SDS-PAGE
(16). Without this treatment, however, the 6.5-kDa band was
lacking, and instead, one moving with an apparent molecular mass of 50 kDa was observed. The c subunits of the I. tartaricus
ATPase therefore form a very strong complex that resists boiling
with SDS for 5 min. This property of the I. tartaricus
c subunits is similar to the properties of those from the P. modestum (13) or A. woodii (17)
ATPases.

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Fig. 1.
SDS-PAGE of the purified ATPase of I. tartaricus. Lane 1, 30 µg of ATPase, stained with Coomassie
brilliant blue; lanes 2 and 3, 1 µg of ATPase, stained with
silver; samples applied to lanes 1 and 3 were precipitated with
trichloroacetic acid. The mobilities of molecular mass markers (in
kilodaltons) and the assignments of the polypeptide bands to
individual ATPase subunits are indicated.
|
|
The polypeptide bands seen in Fig. 1 were further identified as
subunits of the I. tartaricus ATPase by N-terminal
protein sequencing (Table 2). The
N-terminal sequences of the
(24 residues),
(24 residues),
(26 residues), and
(35 residues) subunits were 88, 79, 77, and 63%
identical, respectively, to the N termini of the corresponding subunits
from the P. modestum ATPase. Two overlapping sequences
were obtained for the polypeptides moving with an apparent
molecular mass of 22 kDa, in accord with the supposition that this band
represents the unresolved b and
subunits. No sequence was obtained
for the putative a subunit. About 70% of the entire c subunit
sequence was identified by N-terminal protein sequencing. An alignment
of this sequence with the corresponding ones from the ATPase of
P. modestum, A. woodii, and E. coli is shown in Fig. 2. This part of the
I. tartaricus c subunit was 93, 56, and 29% identical
to that from P. modestum, A. woodii, and E. coli, respectively. Q32, which has previously been
identified as one of the Na+-binding ligands
(8), is conserved in the FS-ATPases, whereas the E. coli ATPase has I at this position. The
polypeptide with the apparent molecular mass of 6.5 kDa is
therefore clearly identified as the c subunit. The data also
indicate a close phylogenetic relationship between I. tartaricus and P. modestum, whereas A. woodii and E. coli are more distantly related
organisms.
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Table 2
N-terminal sequences of the subunits of the I. tartaricus ATPase and identity with the corresponding
subunit of the P. modestum ATPase
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Fig. 2.
Sequence alignment of the N-terminal portions of the c
subunits from the ATPases of I. tartaricus (ita-c),
P. modestum (pmo-c), A. woodii (awo-c), and
E. coli (eco-c).
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Catalytic properties of the ATPase.
A characteristic of
FS-ATPases is the specific activation by Na+ ions.
Figure 3 shows the activation profile of
the reconstituted I. tartaricus ATPase by
Na+ ions at pH 8.0 and 9.2. Half-maximal activation of the
ATPase occurred at 270 or 230 µM Na+ at pH 8.0 or
9.2, respectively. Hill plot analyses indicated positive cooperativity
with nH being 1.8 at pH 8.0 and being 2.6 at pH
9.2. These data indicate that the ATPase acquires maximal activation after at least two or three binding sites have been simultaneously occupied with Na+ ions. The residual
ATPase activity observed without NaCl addition was completely
inhibited after preincubation of the enzyme with N,
N'-dicyclohexylcarbodiimide (DCCD). It reflects either
partial activation by residual Na+ ions or the
Na+-independent activity of this enzyme. Low
Na+ concentrations affect the I. tartaricus
ATPase more significantly than the P. modestum enzyme,
because the latter requires five-times-higher Na+
concentrations for half-maximal saturation (10, 11). The I. tartaricus ATPase was activated about twofold by
10 to 20 mM LiCl (data not shown). Half-maximal activation was observed
at 830 µM LiCl. The affinity of the I. tartaricus
ATPase for Li+ was therefore about three times lower
than that for Na+. With a 10-times-lower affinity for
Li+ than for Na+, the P. modestum
ATPase discriminates more significantly between these alkali ions
(10). In the absence of Na+ addition, the
reconstituted ATPase had its optimum at pH 6.7. About half of this
activity was found at pH 6 or 8, respectively. At pH 6.0, ATPase
was not activated by 5 mM NaCl, but at pH 7 to 8, 5 mM NaCl activated
the ATPase twofold. These results are compatible with a
competition among Na+, Li+, and
H+ for binding at the same site of the enzyme, thereby
eliciting its activation, as has already been described in detail for
the P. modestum ATPase (6, 11, 14).

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Fig. 3.
Effect of Na+ concentration on the activity
of reconstituted I. tartaricus ATPase at pH 8.0 ( ) and 9.2 ( ).
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Incubation of the I. tartaricus ATPase with 200 µM DCCD in phosphate buffer, pH 7.0, containing 20 mM KCl led to 80%
inhibition of the ATPase after 20 min (Fig.
4). The ATPase was specifically protected from this inhibition by 2 mM NaCl or 20 mM LiCl, similar to
the P. modestum enzyme (10, 11). This implies
that the DCCD-reactive amino acid (cE65 in the case of the P. modestum ATPase) is part of a Na+-specific binding
site. Occupation of this site by Na+ or Li+
interferes with the modification by DCCD and therefore protects the
ATPase from inhibition.

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Fig. 4.
Inhibition of the I. tartaricus
ATPase by DCCD and protection from this inhibition by
Na+ or Li+ ions. ATPase was incubated at
25°C in 50 mM potassium phosphate buffer, pH 7.0, with 200 µM DCCD
and 2 mM NaCl ( ), 20 mM LiCl ( ), or 20 mM KCl ( ). The residual
ATPase activity was determined with samples taken at the indicated
times. DCCD was absent in the control ( ).
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ATP-driven transport of H+, Na+, or
Li+.
The coupling ion specificity of the I. tartaricus ATPase was further investigated by transport
experiments with proteoliposomes reconstituted with the purified
enzyme. Proton translocation was determined with the ACMA fluorescence
quenching technique. The results in Fig.
5 indicate that the quenching response is
elicited by ATP addition and is completely reversed with the
uncoupler carbonyl cyanide m-chlorophenylhydrazone. The
accumulation of protons inside the proteoliposomes was severely
inhibited by 50 µM NaCl and completely abolished at 1 mM NaCl.
Inhibition of proton transport was also observed in the presence of 0.1 mM LiCl, and 10 mM (this) alkali salt completely prevented proton
uptake. These results thus indicate that the I. tartaricus ATPase pumps protons and that Na+ or
Li+ ions specifically interfere with this transport.
H+, Na+, or Li+ therefore probably
competes for binding and translocation by the ATPase. Direct
measurements of Na+ and Li+ transport by the
ATPase are shown in Fig. 6. After
ATP addition, the internal Na+ concentration increased
within 20 min from 1 to 37 nmol/mg of lipid, while no Na+
accumulation occurred in the control without ATP. Li+
ions were accumulated within 20 min to 38 and 7 nmol/mg of lipid in the
presence or absence of ATP, respectively.

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Fig. 5.
Proton transport into proteoliposomes containing the
purified I. tartaricus ATPase and inhibition of
H+ transport by Na+ (A) or Li+ (B)
ions. Proton transport into the proteoliposomes was determined by the
ACMA fluorescence quenching technique. Quenching was elicited by
ATP addition; the signal was completely reversed with the uncoupler
carbonyl cyanide m-chlorophenylhydrazone (CCCP).
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Fig. 6.
Kinetics of Na+ (A) or Li+ (B)
transport into proteoliposomes containing the purified I. tartaricus ATPase. The transport reactions were initiated by
ATP addition, and Na+ or Li+ ions
accumulated within the proteoliposomes were determined as described in
Materials and Methods. Controls in the absence of ATP are indicated
( ).
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|
We have recently shown that, besides subunit c, subunit a of the
P. modestum ATPase contributes to the extended coupling
ion specificity of this enzyme. The ATPase with a triple mutation in its a subunit loses the capacity to translocate Na+ with
retention of its H+- or Li+-translocating
properties (7, 9). It is not known, however, which residues
determine the extended Na+-translocating properties of the
a subunit of the P. modestum ATPase. The identification
of the I. tartaricus ATPase as another FS-ATPase now offers the possibility of determining, by sequencing of its a subunit, those residues that have been uniquely
conserved within the a subunits of I. tartaricus and
P. modestum. Such residues are obvious candidates for
determining the enzyme's function as a Na+-translocating
ATPase.
 |
FOOTNOTES |
*
Corresponding author. Mailing address:
Mikrobiologisches Institut der Eidgenössischen Technischen
Hochschule, Schmelzbergstrasse 7, CH-8092 Zürich, Switzerland.
Phone: 0041 1 632 3321. Fax: 0041 1 632 1378. E-mail:
dimroth{at}micro.biol.ethz.ch.
 |
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