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Journal of Bacteriology, September 1998, p. 4426-4434, Vol. 180, No. 17
0021-9193/98/$04.00+0
Copyright © 1998, American Society for Microbiology. All rights reserved.
Genetic Linkage and Cotransfer of a Novel,
vanB-Containing Transposon (Tn5382) and a
Low-Affinity Penicillin-Binding Protein 5 Gene in a Clinical
Vancomycin-Resistant Enterococcus faecium Isolate
Lenore L.
Carias,1,2
Susan D.
Rudin,2
Curtis J.
Donskey,2 and
Louis B.
Rice1,2,*
Department of Medicine and Research Service,
Department of Veterans Affairs Medical Center,1
and
Department of Medicine, Case Western Reserve University
School of Medicine,2 Cleveland, Ohio
Received 16 January 1998/Accepted 10 June 1998
 |
ABSTRACT |
Mechanisms for the intercellular transfer of VanB-type vancomycin
resistance determinants and for the almost universal association of
these determinants with those for high-level ampicillin resistance remain poorly defined. We report the discovery of Tn5382, a
ca. 27-kb putative transposon encoding VanB-type glycopeptide
resistance in Enterococcus faecium. Open reading frames
internal to the right end of Tn5382 and downstream of the
vanXB dipeptidase gene exhibit significant
homology to genes encoding the excisase and integrase of conjugative
transposon Tn916. The ends of Tn5382 are also
homologous to the ends of Tn916, especially in regions
bound by the integrase enzyme. PCR amplification experiments indicate
that Tn5382 excises to form a circular intermediate in
E. faecium. Integration of Tn5382 in the
chromosome of E. faecium C68 has occurred 113 bp downstream
of the stop codon for the pbp5 gene, which encodes high-level ampicillin resistance in this clinical isolate. Transfer of
vancomycin, ampicillin, and tetracycline resistance from C68 to an
E. faecium recipient strain occurs at low frequency in
vitro and is associated with acquisition of a 130- to 160-kb segment of
DNA that contains Tn5382, the pbp5 gene, and
its putative repressor gene, psr. The interenterococcal
transfer of this large chromosomal element appears to be the primary
mechanism for vanB operon spread in northeast Ohio. These
results expand the known family of Tn916-related transposons, suggest a mechanism for vanB operon entry into
and dissemination among enterococci, and provide an explanation for the
nearly universal association of vancomycin and high-level ampicillin
resistance in clinical E. faecium strains.
 |
INTRODUCTION |
Enterococci rank among the top four
pathogens causing nosocomial infections over the past decade (11,
40). Infections caused by enterococci have always been among the
most difficult to treat, given the enterococci's extensive array of
intrinsic resistance characteristics, their tolerance to the
bactericidal activity of all antimicrobial agents, and their frequent
acquisition of novel resistance determinants (27).
Ampicillin and vancomycin, however, have until recently remained almost
universally active against enterococci and are the cornerstones of
effective treatment of enterococcal infections.
Since 1990, a pronounced shift in the susceptibility of enterococci to
ampicillin and vancomycin has been observed. The overall prevalence of
ampicillin-resistant Enterococcus faecium, which had been
increasing slowly over the prior decade, has increased substantially
since 1990 (15). The emergence of vancomycin resistance in
enterococci has been even more dramatic. Virtually nonexistent prior to
1989, by 1993 vancomycin-resistant enterococci (VRE), the vast majority
of which were E. faecium strains, represented 7.9% of all
enterococci collected by the Centers for Disease Control and Prevention
and 13.6% of those isolates collected from intensive care units
(4). More than 95% of vancomycin-resistant E. faecium strains in the United States now also express high levels
of resistance to ampicillin. In many cases, VRE strains causing serious
infections in hospitalized patients are resistant to all clinically
available antibiotics.
Resistance to ampicillin (MIC = 32 to 64 µg/ml) in E. faecium results from increased production of a low-affinity
penicillin-binding protein (PBP), PBP5, that is thought to be intrinsic
to all E. faecium strains and can assume the functions of
all of the other PBPs in cell wall synthesis (48). In
Enterococcus hirae, which is closely related to E. faecium, increased production of PBP5 has been attributed to a
deletion in psr, a presumed repressor of pbp5
expression (22). Similar regulatory mutations in an E. faecium psr analogue are thought to be important in increased expression of PBP5 in E. faecium, although direct evidence
for this is lacking (48). Mutations in the structural
pbp5 gene resulting in a decrease in PBP5 penicillin-binding
affinity have been found in E. faecium strains with
high-level ampicillin resistance (MICs of 128 to >512 µg/ml)
(48).
Vancomycin inhibits cell wall (peptidoglycan) synthesis by binding to
the terminal D-alanyl-D-alanine of the
pentapeptide precursors, preventing the polymerization and
cross-linking that are important for peptidoglycan structural
stability. Glycopeptide (vancomycin) resistance in enterococci results
from the acquisition of resistance operons, expression of which results
in the synthesis of precursors terminating in
D-alanine-D-lactic acid that bind glycopeptides
with low affinity and in the destruction of normal pentapeptide
precursors (2). Two such operons, vanA and
vanB, have been described to date.
The close association between ampicillin and vancomycin resistance
phenotypes in VRE is not explained by synergistic or duplicated mechanisms of resistance. In fact, early studies indicated that expression of vancomycin resistance in E. faecium resulted
in hypersusceptibility to penicillin (41). Investigators
hypothesize that this synergy results from the inability of PBP5 to
process lactated peptidoglycan precursors, necessitating the use of
other PBPs that are highly susceptible to ampicillin. Some highly
ampicillin-resistant VRE, however, are resistant to the
penicillin-vancomycin synergism, suggesting that mutations within
pbp5 may result in enzymes both resistant to inhibition by
ampicillin and able to process lactated peptidoglycan precursors
(48).
The exchange of antimicrobial resistance genes between enterococci is
facilitated by conjugative plasmids and transposons. Among the most
interesting of enterococcal transposons are the conjugative
transposons, which are capable of transferring between enterococcal
chromosomes and exhibit a very broad host range (7). Conjugative transposons resemble lambdoid bacteriophages in their mechanism of transposition, employing a nonreplicating circular form as
a transposition intermediate. The two most extensively studied
conjugative transposons are Tn916 and Tn1545
(8, 9). Although these two transposons differ in size (18 versus 25.4 kb, respectively) and resistance determinants
(tetracycline/minocycline versus tetracycline/minocycline,
erythromycin, and kanamycin, respectively), the genes encoding their
transposition functions are identical, as are their termini.
Ampicillin resistance mediated by PBP5 has never been shown to be
mobile or transferable in E. faecium. A gene encoding a related low-affinity PBP, PBP3r, has been localized to a plasmid in
E. hirae (32). The vanB operon is most
often localized to the bacterial chromosome and transfers between
enterococci at low frequency, if at all. The appearance of the
vanB operon in a wide variety of clonally distinct,
high-level ampicillin-resistant E. faecium strains in
several regions suggests the existence of interenterococcal transfer of
this operon and linkage to the ampicillin resistance determinant. In
this paper, we report the discovery of a 27-kb
vanB-containing Tn916-like transposon that is
itself integrated within a larger transferable element that also
contains a mutated pbp5 gene encoding high-level resistance
to ampicillin.
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MATERIALS AND METHODS |
Strains and plasmids.
Relevant bacterial strains, cloning
vectors, and plasmids are listed in Table
1. More than 400 VRE strains from
northeast Ohio were collected as part of a study of the molecular
epidemiology of VRE spread in the region. C68 is a clinical E. faecium strain isolated from the feces of a patient hospitalized
in northeast Ohio. It represents the predominant clone in the region,
with a genotype that is found in more than 50% of area isolates (data not shown). GE-1 is a plasmid-free, rifampin- and fusidic
acid-resistant E. faecium strain used as a recipient in
conjugation experiments. CV133 and CV142 are two transconjugants that
resulted from independent matings between C68 and GE-1.
Enterococcus faecalis JH2-7 is a plasmid-free recipient
strain used in mating experiments (19). E. faecalis OGIXRF is an OG1 derivative used as a recipient in mating
experiments (18). It was selected by sequential inoculation of fusidic acid (25 µg/ml) and rifampin (100 µg/ml) plates with ca.
108 CFU of an overnight culture of OG1X (streptomycin
resistant). Single colonies were harvested and purified, and their
resistance phenotype was confirmed by replating on selective plates
containing both rifampin and fusidic acid at the concentrations stated
above.
Conjugation experiments.
Conjugation experiments for
transfer of chromosomal elements were carried out by mixing 50 µl of
overnight cultures of donor and recipient strains (grown in
nonselective brain heart infusion [BHI] broth) in a sterile test tube
and then spreading the mixture across a BHI agar plate. Plates were
incubated at 37°C overnight. The following day, the confluent growth
on the plate was removed with a platinum loop and suspended in 500 µl
of sterile saline. Aliquots (150 µl) of this suspension were then
plated onto selective plates containing vancomycin (10 µg/ml),
fusidic acid (25 µg/ml), and rifampin (100 µg/ml). The plates were
incubated for 5 days at 37°C and examined each morning for the
appearance of colonies. Colonies were restreaked onto identical plates
and tested for associated antimicrobial resistance by streaking onto
BHI agar plates containing fusidic acid (25 µg/ml), rifampin (100 µg/ml) and erythromycin (10 µg/ml), gentamicin (500 µg/ml),
streptomycin (2,000 µg/ml), or tetracycline (10 µg/ml). MICs of
vancomycin, teicoplanin, and ampicillin were determined in BHI broth
according to standard techniques (30). Conjugation
experiments designed to detect transposition of Tn5382 were
performed by introducing broad-host-range plasmid pAM
1 (kindly
provided by Barbara Murray) into CV133 by conjugation with selection on
BHI plates containing erythromycin (10 µg/ml) and vancomycin (10 µg/ml). CV133(pAM
1) was then mated with JH2-2 (ciprofloxacin
resistant) (kindly provided by Roland Leclerq) by standard filter
mating techniques as described by Christie et al. (5).
Selection for transconjugants occurred on BHI plates containing either
erythromycin (10 µg/ml) and ciprofloxacin (20 µg/ml) or
erythromycin (10 µg/ml), vancomycin (10 µg/ml), and ciprofloxacin
(20 µg/ml).
Hybridization experiments.
Genomic DNA was extracted as
described previously (38) with the following modifications.
After the lysozyme-RNase-proteinase K step (which was shortened to
2 h), the resulting suspension was mixed with a CTAB
(hexadecyltrimethyl ammonium bromide)-NaCl solution and heated at
68°C for 20 min. This mixture was then extracted once with
phenol-chloroform-isoamyl alcohol (25:24:1) and once with
chloroform-isoamyl alcohol. DNA was precipitated with 100%
isopropanol, washed with 70% ethanol, and resuspended in TE (Tris [50
mM], EDTA [10 mM], pH 7.0) buffer. Genomic DNA was digested with
restriction enzymes for 1 to 2 h at 37°C according to the
specifications of the manufacturer (Promega, Madison, Wis.). The
digested DNA was separated on 0.7 to 1% agarose gels overnight. Separated DNA was denatured, neutralized, transferred to nylon filters
by using a negative pressure transfer apparatus (Pharmacia LKB,
Uppsala, Sweden), and baked at 80°C for 1 to 2 h to fix the DNA
to the filter. Filters were prehybridized and hybridized with digoxigenin-labeled probes overnight at 68°C and washed under conditions of high stringency according to the specifications of the
manufacturer (Boehringer-Mannheim, Indianapolis, Ind.).
PFGE.
Genotypic characterization of VRE isolates was
accomplished by separating SmaI-digested genomic DNA by
pulsed-field gel electrophoresis (PFGE). DNA was extracted by using the
GenePath Group 1 Reagent Kit (Bio-Rad, Hercules, Calif.) with the
following modifications: (i) proteinase K (Sigma Chemical Company, St.
Louis, Mo.) (25 mg/ml) in sterile water was used, and (ii) after the
initial proteinase K incubation, plugs were incubated for 16 to 20 hours overnight in 20 µl of proteinase K and 500 µl of 0.5 M EDTA
(pH 7.6) plus 0.5% Sarkosyl and restriction enzyme SmaI (25 U per plug) with the appropriate restriction enzyme buffer (Gibco-BRL,
Gaithersburg, Md.). Digested DNA was separated on 1% agarose gels for
20 h with the settings described by Murray et al. (28).
Southern transfer of DNA from PFGE gels was accomplished as described
by Maniatis et al. (25). Transfer proceeded for 48 h.
Hybridization and washing steps were as described above.
In most cases, DNA probes were derived from cloned fragments and were
labeled either by a random-primer method according to the protocol
supplied by the manufacturer (Boehringer-Mannheim) or by PCR
amplification of cloned inserts, using the forward and reverse pUC18
primers and labeling mix as recommended by the manufacturer (Boehringer-Mannheim). The probe used for hybridization with the vanB operon was a 2.1-kb EcoRV fragment internal
to the vanHB-vanB-vanXB operon. This fragment was excised from an agarose gel after
EcoRV digestion of pCWR370 and labeled with digoxigenin by
the random-primer technique. Probes for the joint region of
circularized forms of conjugative Tn5382 were amplified
directly from enterococcal genomic DNA as previously described
(38), using primers as described below. The
tet(M) tetracycline resistance gene probe was synthesized and labeled as described above by using primers for conserved regions
of tet(M) genes (21). Genomic DNA from E. faecalis CH19 (38), which is known to possess a
chromosomal Tn916-like element, was used as a template for
this amplification reaction. The pbp5 probe was constructed
by labeling an internal amplification product of the pbp5
gene from E. faecium C68 with digoxigenin. Primers used to
amplify the product were as follows: pbp5 795, 5'-GATCTAAAATGTTCCCTCTTGTTG-3'; pbp5 1492, 5'-TCAGCCGATTTGCGACAGGTTA-3'.
Cloning of genomic DNA fragments.
Once fragments of interest
were identified by hybridization, they were removed from agarose gels
and purified by a glass bead preparation (Geneclean; Bio 101, La Jolla,
Calif.). These fragments were then ligated to like-digested pACYC184 or
pUC18 and transformed into Escherichia coli DH5
(16) or E. coli DH10B (Gibco-BRL, Gaithersburg,
Md.) by electroporation (Bio-Rad). Transformed preparations were
inoculated onto plates containing antimicrobials selective for the
cloning vectors, and colonies with the appropriate inserts were
identified by colony hybridization techniques as previously described
(3). These colonies were purified and subcloned as necessary
for further sequencing.
PCR amplification.
Amplification of genomic DNA was
performed on a 9600 thermal cycler with Taq DNA polymerase
according to standard protocols as recommended by the manufacturer
(Perkin-Elmer Cetus, Roche Molecular Systems, Branchburg, N.J.). In
most cases, an overnight culture of either C68 or CV133 was used as a
template. For detection of the joint region of Tn5382,
extracted genomic DNA was used as a template. Primers used for joint
amplification of Tn5382 were TnOUT 9-3 (5'-TCCGAAAGTAAATTGGTAGTA-3') and TnVAN OUT
(5'-CGATCCCGCAAGGCCAGAAATG-3'). Variations were introduced into each
individual protocol depending on the expected size of the amplification
product and the specific primers used. Ten microliters of a total
50-µl PCR reaction mixture was loaded on a 0.7 to 1.2% agarose gel
for analysis.
DNA sequence analysis.
DNA sequencing was performed from
cloned DNA on double-stranded templates with the A.L.F. automated
sequencing kit and fluorescein- or Cy5 indodicarbocyanine dye-labeled
forward and reverse primers. DNA was purified by using the Wizard
miniprep system (Promega). Sequence was determined with the ALFExpress
automated sequencer (Pharmacia LKB). Sequences were compared for
homology with sequences entered into the Genbank, EMBL, DDBJ, and PDB
databases by using the Blastn and Blastx local alignment search tools
(1) and further analyzed by using MacDNAsis version 2.0 (Hitachi, Ltd.) and DNAStar (Madison, Wis.) sequence analysis programs.
Nucleotide sequence accession numbers.
The sequences of the
region extending from the terminal portion of
vanXB to beyond the end of Tn5382 and
of the left end of Tn5382 are entered in GenBank. The
accession numbers are AF063010 and AF063900, respectively.
 |
RESULTS |
A large (>25-kb) Tn916-like element containing the
vanB operon.
Using an internal PCR amplification
product of the vanB gene as a probe, we determined
restriction maps of regions flanking the vanB operon for
more than 20 VanB-type VRE strains collected from northeast Ohio
hospitals in 1995 and 1996. These strains were all determined to be
clonally distinct by PFGE and IS6770 hybridization (29,
46). Seven groups of common vanB region restriction
maps were identified. The largest group (designated group 2) included
11 strains (data not shown). One group 2 strain (E. faecium
C68) was chosen for more detailed study. We ligated an 8.5-kb
BglII/HindIII vanB chromosomal
restriction fragment from C68 to plasmid pACYC184 and transformed the
ligation mixture into E. coli DH10B by electroporation.
Colonies containing the appropriate insert were identified by
hybridization with the vanB probe. One recombinant plasmid
(pCWR370) was chosen for further study. A 4.2-kb
EcoRV/HindIII subfragment of pCWR370
containing the terminal portion of the vanXB
gene and approximately 4 kb of flanking sequence was cloned into vector
pUC18. This recombinant plasmid was designated pCWR374. We subcloned
and sequenced this fragment by using pUC18 forward and reverse primers
as well as custom synthetic primers based on sequences internal to the
insert. We identified several open reading frames (ORFs) with
significant homologies to ORFs present within enterococcal conjugative
transposon Tn916 (Fig. 1)
(20, 42), with translated products exhibiting similarity to
the Tn916 excisase and integrase and to the deduced amino
acid sequences from orf7 and orf8, whose
functions have not been determined. We have designated these ORFs
xis-VB, int-VB, orf7-VB, and
orf8-VB. The closest relationship observed was between the
deduced proteins encoded by xis-VB and xis-Tn
from Tn916. Xis-VB is 59 amino acids in length, with 85%
identity over amino acids 5 through 54 of Xis-Tn. Int-VB is 397 amino
acids in length (compared to an Int-Tn length of 406 amino acids). The
similarity between Int-VB and Int-Tn was also significant, with 68%
identity over the length of the ORF. This similarity was especially
striking on the carboxy-terminal end, where there was 85% identity
over 53 amino acids, including the arginine, histidine, and tyrosine residues conserved in this family of integrases (33).
Similarities were less striking between ORF7-VB (143 amino acids in
length; 35% identical to ORF7 from Tn916 over 129 amino
acids) and ORF8-VB (77 amino acids in length; 33% identical to ORF8
from Tn916 over 64 amino acids). An ORF corresponding to
traA (Fig. 1), which has been shown to be essential for
Tn916-mediated conjugation, could not be identified;
however, a 60-bp segment of DNA upstream of xis-VB on the
complementary strand (the expected position of traA)
exhibited 60% identity with amino acids 33 to 52 of the traA deduced amino acid sequence. This segment fell within
an ORF without an identifiable start codon. However, further analysis indicated that a stop codon upstream of the region of homology occurred
in an ORF whose start codon overlapped the start of xis-VB on the opposite strand. This relationship is analogous to the relationship of xis-Tn and traA in
Tn916. The reading frame of this truncated ORF was the same
as that of the sequence homologous to traA, suggesting that
it represented at least a vestige of a traA-like ORF. All
ORFs are in the same relative orientation to the vanB operon
as are their homologues in Tn916 to the tet(M) gene (Fig. 1). No homologies were found between the
vanXB-flanking sequence and orf6,
-9, and -10 of Tn916, which are
thought to be related to the tet(M) determinant based on the
size of tet(M)-related transcripts (42, 44). The
GC content of these ORFs is ca. 49%, consistent with the previously
reported GC content of the vanB operon and distinctly
different from the 38% GC content of Tn916 (14).

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FIG. 1.
Schematic representation of the right
(integrase-encoding) end of Tn5382 and the left end of
Tn916 (42). The positions of the
vanXB (Tn5382) and tet(M)
(Tn916) genes are shown. The approximate positions of
orf6, -9, and -10 from
Tn916 are indicated. The number of base pairs cited in this
region represents the number of bases between the termination codon of
vanXB and the start codon of orf7-VB
in the upper diagram and the number of bases between the stop codon of
tet(M) and orf7 in the lower diagram.
Investigators have postulated that orf6, -9, and
-10 are transcriptionally related to the tet(M)
gene (42, 43). The positions of the individual ORFs and
their relative sizes are indicated. Directions of transcription of the
ORFs are indicated by the arrows above the ORFs. Amino acid identities
between the ORFs of the two transposons are listed between them. The
relative GC contents of Tn5382 and the flanking sequences
are indicated at the top. Sequence alignments were established by using
the Blastn and Blastx basic alignment search tool (1).
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Downstream of the integrase homologue within the C68 chromosome (Fig.
2), we identified sequences homologous to
the left end
of Tn
916 (
6). Homology was
particularly prominent in regions
previously identified as binding
sites for the integrase enzyme
of Tn
916 (Fig.
2)
(
23). At a point approximately 170 bp downstream
of the stop
codon of
int-VB, we observed an abrupt change in the
GC
content to less than 40%, which is more consistent with enterococcal
DNA. A database homology search revealed identity of this relatively
AT-rich region with sequences flanking the
pbp5 gene from
E. faecium D63r, beginning at a point 113 bp downstream of
the stop codon
of the
pbp5 gene (
48). The
fortuitous observation that the sequence
adjacent to the presumed end
of a Tn
916-like transposon was identical
to sequence
flanking the
pbp5 gene suggested that if this was
a
transposon, the other end would also reveal sequences known
to be
downstream of the
pbp5 ORF. A portion of the
pbp5
gene from
C68 was cloned (by using colony hybridization for selection
of
appropriate inserts) on an 8-kb
HincII fragment
(pCWR403), and
analysis revealed the anticipated
pbp5
sequence. A GC-rich region
was noted 118 bp downstream of the
pbp5 ORF. These data were consistent
with the integration of
a
vanB-containing transposon downstream
of the
pbp5 gene. We have designated this putative transposon
Tn
5382. The physical relationship of Tn
5382 to
the
pbp5 gene is
shown in Fig.
3. Based on the sizes of restriction
fragments hybridizing
to both
pbp5 and
vanB (data
not shown), we estimate that Tn
5382 is a minimum of 27 kb in
size.

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FIG. 2.
Sequences of the termini of Tn5382 (line A)
and comparison with the ends of Tn916 (line B). Identical
nucleotides are indicated by vertical lines between Tn5382
and Tn916 (line B). Identical nucleotides are indicated by
vertical lines between Tn5382 and Tn916. The
boxed sequences represent the 11-bp imperfect inverted repeats of
Tn5382. Arrows indicate the direct repeats within the ends
of Tn916. Boldface underlining represents the regions of
Tn916 protected by the integrase enzyme in DNase protection
assays.
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FIG. 3.
Position of Tn5382 relative to the
pbp5 structural gene in E. faecium C68. The stop
codon of pbp5 (sequence in uppercase) is indicated by the
double underline. The target sequence (and presumed target duplication
after insertion) is boxed.
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In order to more precisely define the ends of Tn
5382, we
cloned the ends from the chromosomal insertion of a
Tn
5382-like element
in
E. faecium D366, a
VanB-type strain isolated in Paris, France,
in the late 1980s
(
47). This strain is unrelated to
E. faecium C68
and does not express increased levels of resistance to penicillin.
Sequencing of the junction clones from D366 revealed sequence
identical
with the ends of Tn
5382 as determined from C68 for more
than
200 bp on each end (data not shown) and confirmed that the
insertion
site was different than that observed in C68. Using
identity between
the sequences from D366 and C68 to define the
limits of the transposon,
we identified imperfect (9 of 11 bp)
inverted repeats at the ends of
Tn
5382 (Fig.
2), as well as 5-bp
(C68-5'-TTTGT-3') and 6-bp
(D366-CTTATG) duplications of the known
target sequence in C68 and of
the presumed target sequence in
D366 (Fig.
4). Homology between the ends of
Tn
5382 and the regions
flanking the duplicated sequences was
noted, suggesting that these
may represent hot spots for insertion
(Fig.
4).

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FIG. 4.
Relationships between the putative target sequences
within E. faecium C68 and E. faecium D366 and the
circularized form of Tn5382 prior to insertion. Both target
sites exhibit significant homology with the ends of the transposon,
suggesting that they may represent hot spots for Tn5382
insertion. The joint region in this diagram is represented by a series
of Ns, since we have no knowledge of the flanking regions prior to this
episode of circularization.
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A comparison of the terminal sequences of Tn
5382 with those
of Tn
916 reveals a precise correspondence in the number of
nucleotides
on the right end of the elements, as shown in Fig.
2. The
left
end of Tn
5382 terminates 9 bp earlier than that of
Tn
916; however,
the final 5 bp is the same for the two
transposons on this end
(AAAAT). The amino terminus of the
Tn
916 integrase binds to the
direct repeats within the ends
of the element. The carboxy terminus
has been shown to bind to the
termini of the transposon and flanking
sequences (
23).
Significant homology exists between the direct
repeats of
Tn
916 and the corresponding regions of the ends of
Tn
5382. However, the homology between the termini of the
elements
is less significant (Fig.
2).
Circularization of Tn5382.
Conjugative transposons such
as Tn916 transpose by a conservative mechanism that involves
the formation of a nonreplicative circular intermediate. The existence
of such circular intermediates of Tn916 and related
transposons has been confirmed by using amplification strategies with
primers designed to direct polymerization outward from the ends of the
transposon (Fig. 5A) (36, 38).
Amplification products are obtained only if the element excises and
forms a circular intermediate. The amplified area contains the point at which the two ends of the transposon are joined, commonly referred to
as the joint. Genomic DNA preparations from C68, CV133, D366, and
E. faecalis V583 (kindly provided by Dan Sahm) were used as templates for the amplification experiments. We were able to amplify a
fragment of the predicted size by using genomic DNA from C68 as a
template (Fig. 5B). Using this labeled joint fragment as a probe, we
identified similar amplification products from CV133 and D366 but not
from V583 (data not shown). PCR products were cloned into vector PCRII
(Invitrogen). Sequence analysis of three cloned PCR products confirm
that they represent a joint amplification product. The joint region in
two instances was 5 bp in length (TTTGT), whereas the joint in the
other was 6 bp (TTTGTA). We have previously observed differences in the
number of nucleotides comprising the joint region of Tn916
(36). These data confirm that Tn5382 excises in
enterococci, compelling evidence that it is a functional transposon
with similarities to Tn916 in its mechanism of
transposition.

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FIG. 5.
(A) Schematic representation of strategy to amplify the
putative joint region of Tn5382, based on previous
strategies for amplification of similar regions of classic conjugative
transposons. P1 and P2 represent the two outward-directed primers used
to synthesize the amplification product. (B) Joint PCR product
generated from genomic DNA isolated from E. faecium C68.
Lane 1, X174 digested with HaeIII (size standard); lane
2, PCR product from E. faecium C68. See the text for details
of primers and joint sequences.
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|
Transposition experiments.
Transfer of pAM
1 from
CV133(pAM
1) to JH2-2 (ciprofloxacin resistant) at rates of
10
7 to 10
6/donor CFU was readily
demonstrable. No transconjugants expressing resistance to
vancomycin were detectable. Given a donor concentration of roughly
109 CFU in these experiments, transposition into the
plasmid would have to occur at a rate of 10
2 to
10
3 per plasmid transfer event to be detectable in these
experiments.
Prevalence of Tn5382.
To estimate the prevalence of
Tn5382, we designed primers (9-3 650 [5'-GTTCTTATTCCGCAGGTGGTGATT-3'] and 9-3 362 [5'-ACGCCATGCTATTTACTTCCGGC-3') to amplify a small
product internal to the nonintegrase (left) end of the element. PCR
amplification studies were performed directly from overnight cultures
of VanB-type E. faecium strains from diverse geographic
regions. This end of Tn5382 was present in vanB
VRE from Honolulu, Hawaii (one of two strains studied), Los Angeles, Calif. (one of two), Paris (one of one), Pittsburgh, Pa. (one of one),
Providence, R.I. (one of one), and Scranton, Pa. (one of one), as well
as in 10 of 14 northeast Ohio clones tested. Amplification products
were not observed from E. faecalis V583 (St. Louis, Mo.),
three strains from Chicago, Ill., and two strains from Houston, Tex.
Structural mutations within the C68 pbp5 gene.
Preliminary analysis of the C68 pbp5 gene indicates that the
pbp5 ORF is intact and is preceded ca. 80 bp upstream by an
ORF similar to previously described psr (negative regulator)
genes. Several mutations implicated in high levels of ampicillin
resistance have been identified within the pbp5 ORF,
including mutations corresponding to an N
K change at amino acid 485 and an A
T change at amino acid 499 found in highly resistant
E. faecium H80721 (48). An extra serine at
position 466, first identified in H80721, is also present in C68. Since
H80721 was isolated in Pittsburgh, Pa., not far from Cleveland, Ohio,
these findings suggest that the two strains may have a common lineage.
Cotransfer of the Tn5382 and the pbp5
gene.
To determine whether Tn5382 is conjugative, we
performed mating experiments (38) between E. faecium C68 and recipient strains E. faecium GE-1,
E. faecalis JH2-7 (19), and E. faecalis OG1XRF. Vancomycin resistance was transferable from C68
to GE-1 in matings on solid media at low frequency (10
9
to 10
8/recipient CFU). No transfer to either E. faecalis recipient was observed in several mating experiments. Two
E. faecium transconjugants (designated CV133 and CV142) were
further characterized by PFGE of SmaI-digested genomic DNA
(Fig. 6). In CV133, transfer was associated with the loss of a recipient SmaI band and the
appearance of a new band approximately 130 kb larger than the absent
band. In CV142, a missing band was not obvious, but a new band was
apparent. If insertion occurred within the collection of similar-sized
bands observed at the uppermost portion of the recipient digest (Fig. 6), the calculated size of the transferred DNA would be 160 kb. These
findings suggested that a 130- to 160-kb transferable element had
integrated into two distinct loci within the E. faecium GE-1 chromosome in association with transfer of vancomycin resistance.

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|
FIG. 6.
PFGE of SmaI-digested genomic DNA from C68
(lane A), CV133 (lane C), CV142 (lane F), and GE-1 (lane I). Lanes B,
D, G, and J, hybridizations of Southern transfers of lanes A, C, F, and
I, respectively, with a 2.1-kb EcoRV fragment internal to
the vanHB-vanB-vanXB
operon. Lanes E, H, and K, hybridization of the gel with a PCR
amplification product of a region internal to the pbp5 gene.
Blots were not stripped and reprobed; duplicate lanes from the same gel
were blotted. The additional gel lanes are not shown to conserve space.
Lane L, Megabase II size standard (Bethesda Research Laboratories),
with the corresponding band sizes (in kilobases) at the right.
Hybridizations were performed and filters were washed under
high-stringency conditions.
|
|
Southern transfers of this PFGE separation revealed hybridization of
vanB and
pbp5 probes to identical fragments in
each transconjugant.
No hybridization to genomic DNA from the recipient
strain GE-1
was observed. In addition, a separate study of GE-1 genomic
DNA
revealed no hybridization to
psr from C68 (data not
shown). MICs
of ampicillin and vancomycin in C68, CV133, and GE-1
revealed
transfer of reduced levels of resistance to both ampicillin
and
vancomycin in comparison to levels expressed by the donor, with
continued susceptibility to teicoplanin (Table
2). Tetracycline/minocycline
resistance
was expressed by the transconjugants, suggesting that
a
tet(M) gene is also present in the 130- to 160-kb element.
Genomic
DNA from transconjugants did not hybridize with the
tet(M) probe,
however, suggesting that this resistance
phenotype was conferred
by a gene not closely related to the
tet(M) genes previously described
for gram-positive
bacteria. We determined ampicillin and vancomycin
MICs for 16 transconjugants resulting from matings between C68
and GE-1. Ampicillin
MICs for the C68 transconjugants ranged from
8 to 128 µg/ml, while
vancomycin MICs ranged from 16 to 64 µg/ml.
There was no correlation
between expressed levels of resistance
to the two antibiotics.
 |
DISCUSSION |
The discovery of a genetic linkage between a Tn916-like
vanB-carrying putative transposon and a high-level
ampicillin resistance determinant within a transferable element is
important in several respects. On a basic scientific level, it provides
a genetic explanation for the virtually universal observation that
vancomycin-resistant E. faecium strains also express high
levels of resistance to ampicillin. It also expands the family of
Tn916-like transposons, unique elements that are important
in the dissemination of antimicrobial resistance in a broad range of
bacteria. On a clinical level, the association of the two determinants
on a transferable element has important implications for selection of
these strains. Specifically, antimicrobial pressure that selects for
high levels of resistance to ampicillin will also select for resistance
to vancomycin. The vancomycin-ampicillin resistance linkage could
therefore explain recent observations that increased use of
extended-spectrum cephalosporins (which have no activity in the
presence of mutated PBP5) is associated with an increased prevalence of
VRE colonization within hospitals (34).
Since we have not demonstrated transposition in a
recombination-deficient background, Tn5382 does not formally
meet the definition of a transposon. It does, however, demonstrate
numerous characteristics that are emblematic of transposons. The
structural similarity with Tn916 is striking. In addition,
we have identified and characterized two separate insertions of the
element, with highly suggestive evidence for the presence of a target
duplication in both locations. Finally, our ability to amplify a joint
region from Tn5382 confirms that it is capable of excision
to form a circular intermediate. Excision is thought to be the
rate-limiting step for Tn916 transposition. The fact that we
have not been able to demonstrate transposition of Tn5382 in
vitro is most likely due to the lack of appropriate tools for selection
of transposition events in E. faecium. We were not able to
detect transposition into pAM
1, but the transfer frequency of this
plasmid is relatively low. The most commonly employed plasmids for
detection of transposition in enterococci are the pheromone-responsive
plasmids, but the host range of these plasmids is generally restricted
to E. faecalis. A single pheromone-responsive plasmid,
pHKK703, has been described for E. faecium (17).
Attempts to introduce this plasmid into CV133 were unsuccessful.
There are several possible explanations for the fact that we were not
able to demonstrate transfer of vancomycin resistance independent of
penicillin resistance in these experiments. It is possible that
Tn5382 is not a conjugative transposon. Alternatively, if
Tn5382 is a conjugative transposon, its conjugative genes
may not function in enterococci. It is also possible that this
particular transposon has a mutated traA equivalent,
resulting in loss of transposition function. Interruption of the
traA gene of Tn916 eliminates conjugative
transposition. Finally, it is possible that independent transfer of
Tn5382 falls below the limit of detection with these
experiments. Further experiments to examine the conjugative potential
of Tn5382 are planned.
The discovery of the vanB operon within a mobile element is
not altogether surprising. The genetic heterogeneity of VanB-type strains in clinical outbreaks suggests that the operon is incorporated within structures that are capable of conjugal transfer between enterococcal strains (26). In addition, the GC content of
the vanB operon (12) is distinct enough from that
of enterococcal genes that some mechanism for its arrival in
enterococci must be presumed. It is plausible that conjugal transfer of
Tn5382 is the mechanism by which the vanB
resistance operons enter into the enterococcus from their species of
origin. Equally plausible is a scenario in which a broad-host-range
plasmid entered into the Tn5382-harboring species and then
returned to E. faecium after incorporating
Tn5382. We have reported evidence for a similar mechanism of
resistance transfer between staphylococci and enterococci (3).
Although Tn5382 is significantly different than
Tn916, its structure is highly analogous. The identical
positioning of the resistance determinants relative to the
transposition genes in the two transposons is especially noteworthy. In
both cases, the orf7 and orf8 homologues begin
downstream of ORFs known (in the case of the
vanXB gene) or postulated (in the cases of
orf6, orf9, and orf10 of
Tn916) to be related to the resistance determinant. It has
been suggested that conjugative transposons represent elements highly
developed for movement between different genera and that the associated
resistance genes represent relatively recent arrivals (31).
The data reported in this paper are consistent with this hypothesis and
raise the possibility that this location within conjugative transposons
represents a hot spot for insertion of resistance determinants, perhaps
similar to the well-described integrons found on plasmids of
gram-negative species. It will be of interest to determine the
nucleotide sequence of the region immediately upstream of the
vanR gene (at the 5' end of the vanB operon), to
determine whether a novel tet(M) gene is located in that
position and to compare the sequence with upstream sequences from the
analogous region in Tn916.
The mechanism of excision and integration of conjugative transposons
resembles that of lambdoid bacteriophages. Unlike lambdoid bacteriophages, however, the circular intermediates of conjugative transposons are joined at the ends by mismatched strands representing sequence from flanking regions on either side of the previous insertion. Recent data suggest that the heteroduplexed joint region of
conjugative transposons is repaired to form a homoduplex, with preference for retention of a specific strand (24). On
subsequent insertion, transposon-flanking regions represent the target
sequence on one side and one of the mismatched strands (from the
circular form) on the other. Our ability to amplify joints from the
circularized forms of Tn5382 indicates that it excises and
forms circular intermediates, much like Tn916. Unlike for
Tn916, however, we have identified what appear to be
duplications of the target sequence flanking two Tn5382
insertions. In one case, the apparent target duplication is 6 bp; in
the other, it is 5 bp. Tn5276, a 70-kb nisin-sucrose conjugative transposon identified in Lactococcus lactis, is
also reported to generate 6-bp duplications of the target sequence (35). Without knowing the sequences flanking the prior
insertion, however, we cannot draw firm conclusions regarding the
generation of target duplications by Tn5382.
To our knowledge, this paper represents the first report of
transferable pbp5 in E. faecium. The close
genetic linkage and cotransfer of the vanB operon and the
high-level resistance pbp5 gene are of considerable
importance. The almost universal association, in the United States,
between vancomycin resistance and ampicillin resistance in E. faecium has to date been unexplained. Genetic linkage of the two
resistance determinants on a transferable element neatly explains the
association. The observation that the restriction map flanking the
vanB gene in E. faecium C68 is identical to that observed for 10 other clonally distinct VRE from northeast Ohio (data
not shown) suggests that transfer of the larger (130- to 160-kb)
element between enterococci is the primary mechanism by which
interenterococcal dissemination of VanB-type vancomycin resistance and
high-level ampicillin resistance occurs in this region. Since VanB-type
strains represent ca. 80% of VRE in northeast Ohio (9a),
this dissemination has had a profound impact on the ability to
effectively treat enterococcal infections. Further studies are planned
to determine the prevalence of this larger element as well as its
internal structure and mechanism(s) of transfer.
 |
ACKNOWLEDGMENTS |
These studies were supported by a Department of Veterans Affairs
Merit Review and by a grant from the Ohio Department of Health.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Infectious
Diseases Section 1110(W), VA Medical Center, 10701 East Blvd.,
Cleveland, OH 44106. Phone: (216) 791-3800, ext. 4399. Fax: (216)
231-3482. E-mail: Lbr{at}po.cwru.edu.
 |
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Journal of Bacteriology, September 1998, p. 4426-4434, Vol. 180, No. 17
0021-9193/98/$04.00+0
Copyright © 1998, American Society for Microbiology. All rights reserved.
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