Journal of Bacteriology, September 1998, p. 4426-4434, Vol. 180, No. 17
0021-9193/98/$04.00+0
Copyright © 1998, American Society for Microbiology. All rights reserved.
Department of Medicine and Research Service,
Received 16 January 1998/Accepted 10 June 1998
Mechanisms for the intercellular transfer of VanB-type vancomycin
resistance determinants and for the almost universal association of
these determinants with those for high-level ampicillin resistance remain poorly defined. We report the discovery of Tn5382, a
ca. 27-kb putative transposon encoding VanB-type glycopeptide
resistance in Enterococcus faecium. Open reading frames
internal to the right end of Tn5382 and downstream of the
vanXB dipeptidase gene exhibit significant
homology to genes encoding the excisase and integrase of conjugative
transposon Tn916. The ends of Tn5382 are also
homologous to the ends of Tn916, especially in regions
bound by the integrase enzyme. PCR amplification experiments indicate
that Tn5382 excises to form a circular intermediate in
E. faecium. Integration of Tn5382 in the
chromosome of E. faecium C68 has occurred 113 bp downstream
of the stop codon for the pbp5 gene, which encodes high-level ampicillin resistance in this clinical isolate. Transfer of
vancomycin, ampicillin, and tetracycline resistance from C68 to an
E. faecium recipient strain occurs at low frequency in
vitro and is associated with acquisition of a 130- to 160-kb segment of
DNA that contains Tn5382, the pbp5 gene, and
its putative repressor gene, psr. The interenterococcal
transfer of this large chromosomal element appears to be the primary
mechanism for vanB operon spread in northeast Ohio. These
results expand the known family of Tn916-related transposons, suggest a mechanism for vanB operon entry into
and dissemination among enterococci, and provide an explanation for the
nearly universal association of vancomycin and high-level ampicillin
resistance in clinical E. faecium strains.
Enterococci rank among the top four
pathogens causing nosocomial infections over the past decade (11,
40). Infections caused by enterococci have always been among the
most difficult to treat, given the enterococci's extensive array of
intrinsic resistance characteristics, their tolerance to the
bactericidal activity of all antimicrobial agents, and their frequent
acquisition of novel resistance determinants (27).
Ampicillin and vancomycin, however, have until recently remained almost
universally active against enterococci and are the cornerstones of
effective treatment of enterococcal infections.
Since 1990, a pronounced shift in the susceptibility of enterococci to
ampicillin and vancomycin has been observed. The overall prevalence of
ampicillin-resistant Enterococcus faecium, which had been
increasing slowly over the prior decade, has increased substantially
since 1990 (15). The emergence of vancomycin resistance in
enterococci has been even more dramatic. Virtually nonexistent prior to
1989, by 1993 vancomycin-resistant enterococci (VRE), the vast majority
of which were E. faecium strains, represented 7.9% of all
enterococci collected by the Centers for Disease Control and Prevention
and 13.6% of those isolates collected from intensive care units
(4). More than 95% of vancomycin-resistant E. faecium strains in the United States now also express high levels
of resistance to ampicillin. In many cases, VRE strains causing serious
infections in hospitalized patients are resistant to all clinically
available antibiotics.
Resistance to ampicillin (MIC = 32 to 64 µg/ml) in E. faecium results from increased production of a low-affinity
penicillin-binding protein (PBP), PBP5, that is thought to be intrinsic
to all E. faecium strains and can assume the functions of
all of the other PBPs in cell wall synthesis (48). In
Enterococcus hirae, which is closely related to E. faecium, increased production of PBP5 has been attributed to a
deletion in psr, a presumed repressor of pbp5
expression (22). Similar regulatory mutations in an E. faecium psr analogue are thought to be important in increased expression of PBP5 in E. faecium, although direct evidence
for this is lacking (48). Mutations in the structural
pbp5 gene resulting in a decrease in PBP5 penicillin-binding
affinity have been found in E. faecium strains with
high-level ampicillin resistance (MICs of 128 to >512 µg/ml)
(48).
Vancomycin inhibits cell wall (peptidoglycan) synthesis by binding to
the terminal D-alanyl-D-alanine of the
pentapeptide precursors, preventing the polymerization and
cross-linking that are important for peptidoglycan structural
stability. Glycopeptide (vancomycin) resistance in enterococci results
from the acquisition of resistance operons, expression of which results
in the synthesis of precursors terminating in
D-alanine-D-lactic acid that bind glycopeptides
with low affinity and in the destruction of normal pentapeptide
precursors (2). Two such operons, vanA and
vanB, have been described to date.
The close association between ampicillin and vancomycin resistance
phenotypes in VRE is not explained by synergistic or duplicated mechanisms of resistance. In fact, early studies indicated that expression of vancomycin resistance in E. faecium resulted
in hypersusceptibility to penicillin (41). Investigators
hypothesize that this synergy results from the inability of PBP5 to
process lactated peptidoglycan precursors, necessitating the use of
other PBPs that are highly susceptible to ampicillin. Some highly
ampicillin-resistant VRE, however, are resistant to the
penicillin-vancomycin synergism, suggesting that mutations within
pbp5 may result in enzymes both resistant to inhibition by
ampicillin and able to process lactated peptidoglycan precursors
(48).
The exchange of antimicrobial resistance genes between enterococci is
facilitated by conjugative plasmids and transposons. Among the most
interesting of enterococcal transposons are the conjugative
transposons, which are capable of transferring between enterococcal
chromosomes and exhibit a very broad host range (7). Conjugative transposons resemble lambdoid bacteriophages in their mechanism of transposition, employing a nonreplicating circular form as
a transposition intermediate. The two most extensively studied
conjugative transposons are Tn916 and Tn1545
(8, 9). Although these two transposons differ in size (18 versus 25.4 kb, respectively) and resistance determinants
(tetracycline/minocycline versus tetracycline/minocycline,
erythromycin, and kanamycin, respectively), the genes encoding their
transposition functions are identical, as are their termini.
Ampicillin resistance mediated by PBP5 has never been shown to be
mobile or transferable in E. faecium. A gene encoding a related low-affinity PBP, PBP3r, has been localized to a plasmid in
E. hirae (32). The vanB operon is most
often localized to the bacterial chromosome and transfers between
enterococci at low frequency, if at all. The appearance of the
vanB operon in a wide variety of clonally distinct,
high-level ampicillin-resistant E. faecium strains in
several regions suggests the existence of interenterococcal transfer of
this operon and linkage to the ampicillin resistance determinant. In
this paper, we report the discovery of a 27-kb
vanB-containing Tn916-like transposon that is
itself integrated within a larger transferable element that also
contains a mutated pbp5 gene encoding high-level resistance
to ampicillin.
Strains and plasmids.
Relevant bacterial strains, cloning
vectors, and plasmids are listed in Table
1. More than 400 VRE strains from
northeast Ohio were collected as part of a study of the molecular
epidemiology of VRE spread in the region. C68 is a clinical E. faecium strain isolated from the feces of a patient hospitalized
in northeast Ohio. It represents the predominant clone in the region,
with a genotype that is found in more than 50% of area isolates (data not shown). GE-1 is a plasmid-free, rifampin- and fusidic
acid-resistant E. faecium strain used as a recipient in
conjugation experiments. CV133 and CV142 are two transconjugants that
resulted from independent matings between C68 and GE-1.
Enterococcus faecalis JH2-7 is a plasmid-free recipient
strain used in mating experiments (19). E. faecalis OGIXRF is an OG1 derivative used as a recipient in mating
experiments (18). It was selected by sequential inoculation of fusidic acid (25 µg/ml) and rifampin (100 µg/ml) plates with ca.
108 CFU of an overnight culture of OG1X (streptomycin
resistant). Single colonies were harvested and purified, and their
resistance phenotype was confirmed by replating on selective plates
containing both rifampin and fusidic acid at the concentrations stated
above.
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ABSTRACT
Top
Abstract
Introduction
Materials & Methods
Results
Discussion
References
![]()
INTRODUCTION
Top
Abstract
Introduction
Materials & Methods
Results
Discussion
References
![]()
MATERIALS AND METHODS
Top
Abstract
Introduction
Materials & Methods
Results
Discussion
References
TABLE 1.
Strains and plasmids
Conjugation experiments.
Conjugation experiments for
transfer of chromosomal elements were carried out by mixing 50 µl of
overnight cultures of donor and recipient strains (grown in
nonselective brain heart infusion [BHI] broth) in a sterile test tube
and then spreading the mixture across a BHI agar plate. Plates were
incubated at 37°C overnight. The following day, the confluent growth
on the plate was removed with a platinum loop and suspended in 500 µl
of sterile saline. Aliquots (150 µl) of this suspension were then
plated onto selective plates containing vancomycin (10 µg/ml),
fusidic acid (25 µg/ml), and rifampin (100 µg/ml). The plates were
incubated for 5 days at 37°C and examined each morning for the
appearance of colonies. Colonies were restreaked onto identical plates
and tested for associated antimicrobial resistance by streaking onto
BHI agar plates containing fusidic acid (25 µg/ml), rifampin (100 µg/ml) and erythromycin (10 µg/ml), gentamicin (500 µg/ml),
streptomycin (2,000 µg/ml), or tetracycline (10 µg/ml). MICs of
vancomycin, teicoplanin, and ampicillin were determined in BHI broth
according to standard techniques (30). Conjugation
experiments designed to detect transposition of Tn5382 were
performed by introducing broad-host-range plasmid pAM
1 (kindly
provided by Barbara Murray) into CV133 by conjugation with selection on
BHI plates containing erythromycin (10 µg/ml) and vancomycin (10 µg/ml). CV133(pAM
1) was then mated with JH2-2 (ciprofloxacin
resistant) (kindly provided by Roland Leclerq) by standard filter
mating techniques as described by Christie et al. (5).
Selection for transconjugants occurred on BHI plates containing either
erythromycin (10 µg/ml) and ciprofloxacin (20 µg/ml) or
erythromycin (10 µg/ml), vancomycin (10 µg/ml), and ciprofloxacin
(20 µg/ml).
Hybridization experiments. Genomic DNA was extracted as described previously (38) with the following modifications. After the lysozyme-RNase-proteinase K step (which was shortened to 2 h), the resulting suspension was mixed with a CTAB (hexadecyltrimethyl ammonium bromide)-NaCl solution and heated at 68°C for 20 min. This mixture was then extracted once with phenol-chloroform-isoamyl alcohol (25:24:1) and once with chloroform-isoamyl alcohol. DNA was precipitated with 100% isopropanol, washed with 70% ethanol, and resuspended in TE (Tris [50 mM], EDTA [10 mM], pH 7.0) buffer. Genomic DNA was digested with restriction enzymes for 1 to 2 h at 37°C according to the specifications of the manufacturer (Promega, Madison, Wis.). The digested DNA was separated on 0.7 to 1% agarose gels overnight. Separated DNA was denatured, neutralized, transferred to nylon filters by using a negative pressure transfer apparatus (Pharmacia LKB, Uppsala, Sweden), and baked at 80°C for 1 to 2 h to fix the DNA to the filter. Filters were prehybridized and hybridized with digoxigenin-labeled probes overnight at 68°C and washed under conditions of high stringency according to the specifications of the manufacturer (Boehringer-Mannheim, Indianapolis, Ind.).
PFGE. Genotypic characterization of VRE isolates was accomplished by separating SmaI-digested genomic DNA by pulsed-field gel electrophoresis (PFGE). DNA was extracted by using the GenePath Group 1 Reagent Kit (Bio-Rad, Hercules, Calif.) with the following modifications: (i) proteinase K (Sigma Chemical Company, St. Louis, Mo.) (25 mg/ml) in sterile water was used, and (ii) after the initial proteinase K incubation, plugs were incubated for 16 to 20 hours overnight in 20 µl of proteinase K and 500 µl of 0.5 M EDTA (pH 7.6) plus 0.5% Sarkosyl and restriction enzyme SmaI (25 U per plug) with the appropriate restriction enzyme buffer (Gibco-BRL, Gaithersburg, Md.). Digested DNA was separated on 1% agarose gels for 20 h with the settings described by Murray et al. (28). Southern transfer of DNA from PFGE gels was accomplished as described by Maniatis et al. (25). Transfer proceeded for 48 h. Hybridization and washing steps were as described above.
In most cases, DNA probes were derived from cloned fragments and were labeled either by a random-primer method according to the protocol supplied by the manufacturer (Boehringer-Mannheim) or by PCR amplification of cloned inserts, using the forward and reverse pUC18 primers and labeling mix as recommended by the manufacturer (Boehringer-Mannheim). The probe used for hybridization with the vanB operon was a 2.1-kb EcoRV fragment internal to the vanHB-vanB-vanXB operon. This fragment was excised from an agarose gel after EcoRV digestion of pCWR370 and labeled with digoxigenin by the random-primer technique. Probes for the joint region of circularized forms of conjugative Tn5382 were amplified directly from enterococcal genomic DNA as previously described (38), using primers as described below. The tet(M) tetracycline resistance gene probe was synthesized and labeled as described above by using primers for conserved regions of tet(M) genes (21). Genomic DNA from E. faecalis CH19 (38), which is known to possess a chromosomal Tn916-like element, was used as a template for this amplification reaction. The pbp5 probe was constructed by labeling an internal amplification product of the pbp5 gene from E. faecium C68 with digoxigenin. Primers used to amplify the product were as follows: pbp5 795, 5'-GATCTAAAATGTTCCCTCTTGTTG-3'; pbp5 1492, 5'-TCAGCCGATTTGCGACAGGTTA-3'.Cloning of genomic DNA fragments.
Once fragments of interest
were identified by hybridization, they were removed from agarose gels
and purified by a glass bead preparation (Geneclean; Bio 101, La Jolla,
Calif.). These fragments were then ligated to like-digested pACYC184 or
pUC18 and transformed into Escherichia coli DH5
(16) or E. coli DH10B (Gibco-BRL, Gaithersburg,
Md.) by electroporation (Bio-Rad). Transformed preparations were
inoculated onto plates containing antimicrobials selective for the
cloning vectors, and colonies with the appropriate inserts were
identified by colony hybridization techniques as previously described
(3). These colonies were purified and subcloned as necessary
for further sequencing.
PCR amplification. Amplification of genomic DNA was performed on a 9600 thermal cycler with Taq DNA polymerase according to standard protocols as recommended by the manufacturer (Perkin-Elmer Cetus, Roche Molecular Systems, Branchburg, N.J.). In most cases, an overnight culture of either C68 or CV133 was used as a template. For detection of the joint region of Tn5382, extracted genomic DNA was used as a template. Primers used for joint amplification of Tn5382 were TnOUT 9-3 (5'-TCCGAAAGTAAATTGGTAGTA-3') and TnVAN OUT (5'-CGATCCCGCAAGGCCAGAAATG-3'). Variations were introduced into each individual protocol depending on the expected size of the amplification product and the specific primers used. Ten microliters of a total 50-µl PCR reaction mixture was loaded on a 0.7 to 1.2% agarose gel for analysis.
DNA sequence analysis. DNA sequencing was performed from cloned DNA on double-stranded templates with the A.L.F. automated sequencing kit and fluorescein- or Cy5 indodicarbocyanine dye-labeled forward and reverse primers. DNA was purified by using the Wizard miniprep system (Promega). Sequence was determined with the ALFExpress automated sequencer (Pharmacia LKB). Sequences were compared for homology with sequences entered into the Genbank, EMBL, DDBJ, and PDB databases by using the Blastn and Blastx local alignment search tools (1) and further analyzed by using MacDNAsis version 2.0 (Hitachi, Ltd.) and DNAStar (Madison, Wis.) sequence analysis programs.
Nucleotide sequence accession numbers. The sequences of the region extending from the terminal portion of vanXB to beyond the end of Tn5382 and of the left end of Tn5382 are entered in GenBank. The accession numbers are AF063010 and AF063900, respectively.
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RESULTS |
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A large (>25-kb) Tn916-like element containing the vanB operon. Using an internal PCR amplification product of the vanB gene as a probe, we determined restriction maps of regions flanking the vanB operon for more than 20 VanB-type VRE strains collected from northeast Ohio hospitals in 1995 and 1996. These strains were all determined to be clonally distinct by PFGE and IS6770 hybridization (29, 46). Seven groups of common vanB region restriction maps were identified. The largest group (designated group 2) included 11 strains (data not shown). One group 2 strain (E. faecium C68) was chosen for more detailed study. We ligated an 8.5-kb BglII/HindIII vanB chromosomal restriction fragment from C68 to plasmid pACYC184 and transformed the ligation mixture into E. coli DH10B by electroporation. Colonies containing the appropriate insert were identified by hybridization with the vanB probe. One recombinant plasmid (pCWR370) was chosen for further study. A 4.2-kb EcoRV/HindIII subfragment of pCWR370 containing the terminal portion of the vanXB gene and approximately 4 kb of flanking sequence was cloned into vector pUC18. This recombinant plasmid was designated pCWR374. We subcloned and sequenced this fragment by using pUC18 forward and reverse primers as well as custom synthetic primers based on sequences internal to the insert. We identified several open reading frames (ORFs) with significant homologies to ORFs present within enterococcal conjugative transposon Tn916 (Fig. 1) (20, 42), with translated products exhibiting similarity to the Tn916 excisase and integrase and to the deduced amino acid sequences from orf7 and orf8, whose functions have not been determined. We have designated these ORFs xis-VB, int-VB, orf7-VB, and orf8-VB. The closest relationship observed was between the deduced proteins encoded by xis-VB and xis-Tn from Tn916. Xis-VB is 59 amino acids in length, with 85% identity over amino acids 5 through 54 of Xis-Tn. Int-VB is 397 amino acids in length (compared to an Int-Tn length of 406 amino acids). The similarity between Int-VB and Int-Tn was also significant, with 68% identity over the length of the ORF. This similarity was especially striking on the carboxy-terminal end, where there was 85% identity over 53 amino acids, including the arginine, histidine, and tyrosine residues conserved in this family of integrases (33). Similarities were less striking between ORF7-VB (143 amino acids in length; 35% identical to ORF7 from Tn916 over 129 amino acids) and ORF8-VB (77 amino acids in length; 33% identical to ORF8 from Tn916 over 64 amino acids). An ORF corresponding to traA (Fig. 1), which has been shown to be essential for Tn916-mediated conjugation, could not be identified; however, a 60-bp segment of DNA upstream of xis-VB on the complementary strand (the expected position of traA) exhibited 60% identity with amino acids 33 to 52 of the traA deduced amino acid sequence. This segment fell within an ORF without an identifiable start codon. However, further analysis indicated that a stop codon upstream of the region of homology occurred in an ORF whose start codon overlapped the start of xis-VB on the opposite strand. This relationship is analogous to the relationship of xis-Tn and traA in Tn916. The reading frame of this truncated ORF was the same as that of the sequence homologous to traA, suggesting that it represented at least a vestige of a traA-like ORF. All ORFs are in the same relative orientation to the vanB operon as are their homologues in Tn916 to the tet(M) gene (Fig. 1). No homologies were found between the vanXB-flanking sequence and orf6, -9, and -10 of Tn916, which are thought to be related to the tet(M) determinant based on the size of tet(M)-related transcripts (42, 44). The GC content of these ORFs is ca. 49%, consistent with the previously reported GC content of the vanB operon and distinctly different from the 38% GC content of Tn916 (14).
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Circularization of Tn5382. Conjugative transposons such as Tn916 transpose by a conservative mechanism that involves the formation of a nonreplicative circular intermediate. The existence of such circular intermediates of Tn916 and related transposons has been confirmed by using amplification strategies with primers designed to direct polymerization outward from the ends of the transposon (Fig. 5A) (36, 38). Amplification products are obtained only if the element excises and forms a circular intermediate. The amplified area contains the point at which the two ends of the transposon are joined, commonly referred to as the joint. Genomic DNA preparations from C68, CV133, D366, and E. faecalis V583 (kindly provided by Dan Sahm) were used as templates for the amplification experiments. We were able to amplify a fragment of the predicted size by using genomic DNA from C68 as a template (Fig. 5B). Using this labeled joint fragment as a probe, we identified similar amplification products from CV133 and D366 but not from V583 (data not shown). PCR products were cloned into vector PCRII (Invitrogen). Sequence analysis of three cloned PCR products confirm that they represent a joint amplification product. The joint region in two instances was 5 bp in length (TTTGT), whereas the joint in the other was 6 bp (TTTGTA). We have previously observed differences in the number of nucleotides comprising the joint region of Tn916 (36). These data confirm that Tn5382 excises in enterococci, compelling evidence that it is a functional transposon with similarities to Tn916 in its mechanism of transposition.
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Transposition experiments.
Transfer of pAM
1 from
CV133(pAM
1) to JH2-2 (ciprofloxacin resistant) at rates of
10
7 to 10
6/donor CFU was readily
demonstrable. No transconjugants expressing resistance to
vancomycin were detectable. Given a donor concentration of roughly
109 CFU in these experiments, transposition into the
plasmid would have to occur at a rate of 10
2 to
10
3 per plasmid transfer event to be detectable in these
experiments.
Prevalence of Tn5382. To estimate the prevalence of Tn5382, we designed primers (9-3 650 [5'-GTTCTTATTCCGCAGGTGGTGATT-3'] and 9-3 362 [5'-ACGCCATGCTATTTACTTCCGGC-3') to amplify a small product internal to the nonintegrase (left) end of the element. PCR amplification studies were performed directly from overnight cultures of VanB-type E. faecium strains from diverse geographic regions. This end of Tn5382 was present in vanB VRE from Honolulu, Hawaii (one of two strains studied), Los Angeles, Calif. (one of two), Paris (one of one), Pittsburgh, Pa. (one of one), Providence, R.I. (one of one), and Scranton, Pa. (one of one), as well as in 10 of 14 northeast Ohio clones tested. Amplification products were not observed from E. faecalis V583 (St. Louis, Mo.), three strains from Chicago, Ill., and two strains from Houston, Tex.
Structural mutations within the C68 pbp5 gene.
Preliminary analysis of the C68 pbp5 gene indicates that the
pbp5 ORF is intact and is preceded ca. 80 bp upstream by an
ORF similar to previously described psr (negative regulator)
genes. Several mutations implicated in high levels of ampicillin
resistance have been identified within the pbp5 ORF,
including mutations corresponding to an N
K change at amino acid 485 and an A
T change at amino acid 499 found in highly resistant
E. faecium H80721 (48). An extra serine at
position 466, first identified in H80721, is also present in C68. Since
H80721 was isolated in Pittsburgh, Pa., not far from Cleveland, Ohio,
these findings suggest that the two strains may have a common lineage.
Cotransfer of the Tn5382 and the pbp5
gene.
To determine whether Tn5382 is conjugative, we
performed mating experiments (38) between E. faecium C68 and recipient strains E. faecium GE-1,
E. faecalis JH2-7 (19), and E. faecalis OG1XRF. Vancomycin resistance was transferable from C68
to GE-1 in matings on solid media at low frequency (10
9
to 10
8/recipient CFU). No transfer to either E. faecalis recipient was observed in several mating experiments. Two
E. faecium transconjugants (designated CV133 and CV142) were
further characterized by PFGE of SmaI-digested genomic DNA
(Fig. 6). In CV133, transfer was associated with the loss of a recipient SmaI band and the
appearance of a new band approximately 130 kb larger than the absent
band. In CV142, a missing band was not obvious, but a new band was
apparent. If insertion occurred within the collection of similar-sized
bands observed at the uppermost portion of the recipient digest (Fig. 6), the calculated size of the transferred DNA would be 160 kb. These
findings suggested that a 130- to 160-kb transferable element had
integrated into two distinct loci within the E. faecium GE-1 chromosome in association with transfer of vancomycin resistance.
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DISCUSSION |
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The discovery of a genetic linkage between a Tn916-like vanB-carrying putative transposon and a high-level ampicillin resistance determinant within a transferable element is important in several respects. On a basic scientific level, it provides a genetic explanation for the virtually universal observation that vancomycin-resistant E. faecium strains also express high levels of resistance to ampicillin. It also expands the family of Tn916-like transposons, unique elements that are important in the dissemination of antimicrobial resistance in a broad range of bacteria. On a clinical level, the association of the two determinants on a transferable element has important implications for selection of these strains. Specifically, antimicrobial pressure that selects for high levels of resistance to ampicillin will also select for resistance to vancomycin. The vancomycin-ampicillin resistance linkage could therefore explain recent observations that increased use of extended-spectrum cephalosporins (which have no activity in the presence of mutated PBP5) is associated with an increased prevalence of VRE colonization within hospitals (34).
Since we have not demonstrated transposition in a
recombination-deficient background, Tn5382 does not formally
meet the definition of a transposon. It does, however, demonstrate
numerous characteristics that are emblematic of transposons. The
structural similarity with Tn916 is striking. In addition,
we have identified and characterized two separate insertions of the
element, with highly suggestive evidence for the presence of a target
duplication in both locations. Finally, our ability to amplify a joint
region from Tn5382 confirms that it is capable of excision
to form a circular intermediate. Excision is thought to be the
rate-limiting step for Tn916 transposition. The fact that we
have not been able to demonstrate transposition of Tn5382 in
vitro is most likely due to the lack of appropriate tools for selection
of transposition events in E. faecium. We were not able to
detect transposition into pAM
1, but the transfer frequency of this
plasmid is relatively low. The most commonly employed plasmids for
detection of transposition in enterococci are the pheromone-responsive
plasmids, but the host range of these plasmids is generally restricted
to E. faecalis. A single pheromone-responsive plasmid,
pHKK703, has been described for E. faecium (17).
Attempts to introduce this plasmid into CV133 were unsuccessful.
There are several possible explanations for the fact that we were not able to demonstrate transfer of vancomycin resistance independent of penicillin resistance in these experiments. It is possible that Tn5382 is not a conjugative transposon. Alternatively, if Tn5382 is a conjugative transposon, its conjugative genes may not function in enterococci. It is also possible that this particular transposon has a mutated traA equivalent, resulting in loss of transposition function. Interruption of the traA gene of Tn916 eliminates conjugative transposition. Finally, it is possible that independent transfer of Tn5382 falls below the limit of detection with these experiments. Further experiments to examine the conjugative potential of Tn5382 are planned.
The discovery of the vanB operon within a mobile element is not altogether surprising. The genetic heterogeneity of VanB-type strains in clinical outbreaks suggests that the operon is incorporated within structures that are capable of conjugal transfer between enterococcal strains (26). In addition, the GC content of the vanB operon (12) is distinct enough from that of enterococcal genes that some mechanism for its arrival in enterococci must be presumed. It is plausible that conjugal transfer of Tn5382 is the mechanism by which the vanB resistance operons enter into the enterococcus from their species of origin. Equally plausible is a scenario in which a broad-host-range plasmid entered into the Tn5382-harboring species and then returned to E. faecium after incorporating Tn5382. We have reported evidence for a similar mechanism of resistance transfer between staphylococci and enterococci (3).
Although Tn5382 is significantly different than Tn916, its structure is highly analogous. The identical positioning of the resistance determinants relative to the transposition genes in the two transposons is especially noteworthy. In both cases, the orf7 and orf8 homologues begin downstream of ORFs known (in the case of the vanXB gene) or postulated (in the cases of orf6, orf9, and orf10 of Tn916) to be related to the resistance determinant. It has been suggested that conjugative transposons represent elements highly developed for movement between different genera and that the associated resistance genes represent relatively recent arrivals (31). The data reported in this paper are consistent with this hypothesis and raise the possibility that this location within conjugative transposons represents a hot spot for insertion of resistance determinants, perhaps similar to the well-described integrons found on plasmids of gram-negative species. It will be of interest to determine the nucleotide sequence of the region immediately upstream of the vanR gene (at the 5' end of the vanB operon), to determine whether a novel tet(M) gene is located in that position and to compare the sequence with upstream sequences from the analogous region in Tn916.
The mechanism of excision and integration of conjugative transposons resembles that of lambdoid bacteriophages. Unlike lambdoid bacteriophages, however, the circular intermediates of conjugative transposons are joined at the ends by mismatched strands representing sequence from flanking regions on either side of the previous insertion. Recent data suggest that the heteroduplexed joint region of conjugative transposons is repaired to form a homoduplex, with preference for retention of a specific strand (24). On subsequent insertion, transposon-flanking regions represent the target sequence on one side and one of the mismatched strands (from the circular form) on the other. Our ability to amplify joints from the circularized forms of Tn5382 indicates that it excises and forms circular intermediates, much like Tn916. Unlike for Tn916, however, we have identified what appear to be duplications of the target sequence flanking two Tn5382 insertions. In one case, the apparent target duplication is 6 bp; in the other, it is 5 bp. Tn5276, a 70-kb nisin-sucrose conjugative transposon identified in Lactococcus lactis, is also reported to generate 6-bp duplications of the target sequence (35). Without knowing the sequences flanking the prior insertion, however, we cannot draw firm conclusions regarding the generation of target duplications by Tn5382.
To our knowledge, this paper represents the first report of transferable pbp5 in E. faecium. The close genetic linkage and cotransfer of the vanB operon and the high-level resistance pbp5 gene are of considerable importance. The almost universal association, in the United States, between vancomycin resistance and ampicillin resistance in E. faecium has to date been unexplained. Genetic linkage of the two resistance determinants on a transferable element neatly explains the association. The observation that the restriction map flanking the vanB gene in E. faecium C68 is identical to that observed for 10 other clonally distinct VRE from northeast Ohio (data not shown) suggests that transfer of the larger (130- to 160-kb) element between enterococci is the primary mechanism by which interenterococcal dissemination of VanB-type vancomycin resistance and high-level ampicillin resistance occurs in this region. Since VanB-type strains represent ca. 80% of VRE in northeast Ohio (9a), this dissemination has had a profound impact on the ability to effectively treat enterococcal infections. Further studies are planned to determine the prevalence of this larger element as well as its internal structure and mechanism(s) of transfer.
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ACKNOWLEDGMENTS |
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These studies were supported by a Department of Veterans Affairs Merit Review and by a grant from the Ohio Department of Health.
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FOOTNOTES |
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* Corresponding author. Mailing address: Infectious Diseases Section 1110(W), VA Medical Center, 10701 East Blvd., Cleveland, OH 44106. Phone: (216) 791-3800, ext. 4399. Fax: (216) 231-3482. E-mail: Lbr{at}po.cwru.edu.
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REFERENCES |
|---|
|
|
|---|
| 1. | Altschul, S. F., W. Gish, W. Miller, E. W. Myers, and D. J. Lipman. 1990. Basic local alignment search tool. J. Mol. Biol. 215:403-410[Medline]. |
| 2. |
Arthur, M., and P. Courvalin.
1993.
Genetics and mechanisms of glycopeptide resistance of enterococci.
Antimicrob. Agents Chemother.
37:1563-1571 |
| 3. | Bonafede, M. E., L. L. Carias, and L. B. Rice. 1997. Enterococcal transposon Tn5384: evolution of a composite transposon through cointegration of enterococcal and staphylococcal plasmids. Antimicrob. Agents Chemother. 41:1854-1858[Abstract]. |
| 4. |
Centers for Disease Control and Prevention.
1993.
Nosocomial enterococci resistant to vancomycin United States, 1989-1993.
Morbid. Mortal. Weekly Rep.
42:597-599[Medline].
|
| 5. |
Christie, P. J.,
R. Z. Korman,
S. A. Zahler,
J. C. Adsit, and G. M. Dunny.
1987.
Two conjugation systems associated with plasmid pCF10: identification of a conjugative transposon that transfers between Streptococcus faecalis and Bacillus subtilis.
J. Bacteriol.
169:2529-2536 |
| 6. |
Clewell, D. B.,
S. E. Flannagan,
Y. Ike,
J. M. Jones, and C. Gawron-Burke.
1988.
Sequence analysis of the termini of conjugative transposon Tn916.
J. Bacteriol.
170:3046-3052 |
| 7. | Clewell, D. B., S. E. Flannagan, and D. D. Jaworski. 1995. Unconstrained bacterial promiscuity: the Tn916-Tn1545 family of conjugative transposons. Trends Microbiol. 3:229-236[Medline]. |
| 8. | Clewell, D. B., and C. Gawron-Burke. 1986. Conjugative transposons and dissemination of antibiotic resistance in streptococci. Annu. Rev. Microbiol. 40:635-659[Medline]. |
| 9. | Courvalin, P., and C. Carlier. 1987. Tn1545: a conjugative shuttle transposon. Mol. Gen. Genet. 206:259-264[Medline]. |
| 9a. | Donskey, C. L. Unpublished data. |
| 10. |
Eliopoulos, G. M.,
C. Wennersten, and R. C. Moellering, Jr.
1982.
Resistant to -lactam antibiotics in Streptococcus faecium.
Antimicrob. Agents Chemother.
22:295-301 |
| 11. |
Emori, T. G., and R. P. Graves.
1993.
An overview of nosocomial infections, including the role of the microbiology laboratory.
Clin. Microbiol. Rev.
6:428-442 |
| 12. |
Evers, S., and R. Courvalin.
1996.
Regulation of VanB-type vancomycin resistance gene expression by the VanSB-VanRB two component regulatory system in Enterococcus faecalis V583.
J. Bacteriol.
178:1302-1309 |
| 13. | Evers, S., D. F. Sahm, and P. Courvalin. 1993. The vanB gene of vancomycin-resistant Enterococcus faecalis V583 is structurally-related to genes encoding D-ala:D-ala ligases and glycopeptide-resistance proteins VanA and VanC. Gene 124:143-144[Medline]. |
| 14. | Flannagan, S. E., L. A. Zitzow, Y. A. Zu, and D. B. Clewell. 1994. Nucleotide sequence of the 18-kb conjugative transposon Tn916 from Enterococcus faecalis. Plasmid 32:350-354[Medline]. |
| 15. |
Grayson, M. L.,
G. M. Eliopoulos,
C. B. Wennersten,
K. L. Ruoff,
P. C. DeGirolami,
M.-J. Ferraro, and R. C. Moellering, Jr.
1991.
Increasing resistance to -lactam antibiotics among clinical isolates of Enterococcus faecium: a 22-year review at one institution.
Antimicrob. Agents Chemother.
35:2180-2184 |
| 16. | Hanahan, D. 1983. Studies on transformation of Escherichia coli with plasmids. J. Mol. Biol. 166:577-580. |
| 17. | Heaton, M. P., L. F. Discotto, M. J. Pucci, and S. Handwerger. 1996. Mobilization of vancomycin resistance by transposon-mediated fusion of a VanA plasmid with an Enterococcus faecalis sex pheromone-response plasmid. Gene 171:9-17[Medline]. |
| 18. |
Ike, Y.,
R. A. Craig,
B. A. White,
Y. Yagi, and D. B. Clewell.
1983.
Modification of Streptococcus faecalis sex pheromones after acquisition of plasmid DNA.
Proc. Natl. Acad. Sci. USA
80:5369-5373 |
| 19. |
Jacob, A. E., and S. J. Hobbs.
1974.
Conjugal transfer of plasmid-borne multiple antibiotic resistance in Streptococcus faecalis var. zymogenes.
J. Bacteriol.
117:360-372 |
| 20. | Jaworksi, D. D., S. E. Flannagan, and D. B. Clewell. 1996. Analysis of traA, int-Tn, and xis-Tn mutations in the conjugative transposon Tn916 in Enterococcus faecalis. Plasmid 36:201-208[Medline]. |
| 21. | Lacroix, J. M., and C. B. Walker. 1995. Detection and incidence of the tetracycline resistance determinant tet(M) in the microflora associated with adult perodontitis. J. Periodontol. 66:102-108[Medline]. |
| 22. |
Ligozzi, M.,
F. Pittaluga, and R. Fontana.
1993.
Identification of a genetic element (psr) which negatively controls expression of Enterococcus hirae penicillin-binding protein 5.
Bacteriol.
175:2046-2051.
|
| 23. | Lu, F., and G. Churchward. 1994. Conjugative transposition: Tn916 integrase contains two independent DNA binding domains that recognize different DNA sequences. EMBO J. 13:1541-1548[Medline]. |
| 24. | Manganelli, R., S. Ricci, and G. Pozzi. 1997. The joint of Tn916 circular intermediates is a homoduplex in Enterococcus faecalis. Plasmid 38:71-78[Medline]. |
| 25. | Maniatis, T. E., E. F. Fritsch, and J. Sambrook. 1982. Molecular cloning: a laboratory manual, p. 382-386. Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y. |
| 26. |
Morris, J. G.,
D. K. Shay,
J. N. Hebden,
R. J. McCarter Jr,
B. E. Perdue,
W. Jarvis,
J. A. Johnson,
T. C. Dowling,
L. B. Polish, and R. S. Schwalbe.
1995.
Enterococci resistant to multiple antimicrobial agents, including vancomycin: establishment of endemicity in a university medical center.
Ann. Intern. Med.
123:250-259 |
| 27. |
Murray, B. E.
1990.
The life and times of the enterococcus.
Clin. Microbiol. Rev.
3:46-65 |
| 28. |
Murray, B. E.,
K. V. Singh,
J. D. Heath,
B. R. Sharma, and G. M. Weinstock.
1990.
Comparison of genomic DNAs of different enterococcal isolates by using restriction endonucleases with infrequent recognition sites.
J. Clin. Microbiol.
28:2059-2063 |
| 29. |
Murray, B. E.,
K. V. Singh,
S. M. Markowitz,
H. Lopardo,
J. E. Patterson,
M. J. Zervos,
E. Rubeglio,
G. M. Eliopoulos,
L. B. Rice,
F. W. Goldstein,
S. G. Jenkins,
G. M. Caputo,
L. S. Moore,
E. S. Wong, and G. Weinstock.
1991.
Evidence for clonal spread of a single strain of -lactamase-producing Enterococcus (Streptococcus) faecalis to six hospitals in five states.
J. Infect. Dis.
163:780-785[Medline].
|
| 30. | National Committee for Clinical Laboratory Standards. 1993. Methods for dilution antimicrobial susceptibility tests for bacteria that grow aerobically. M7-A3. National Committee for Clinical Laboratory Standards, Villanova, Pa. |
| 31. | Oggioni, M. R., C. G. Dowson, J. M. Smith, R. Provvedi, and G. Pozzi. 1996. The tetracycline resistance gene tet(M) exhibits mosaic structure. Plasmids 35:156-163. |
| 32. |
Piras, G.,
D. Raze,
A. El Kharroubi,
D. Hastir,
S. Englebert,
J. Coyette, and J.-M. Ghuysen.
1993.
Cloning and sequencing of the low-affinity penicillin-binding protein 3r-encoding gene of Enterococcus hirae S185: modular design and structural organization of the protein.
J. Bacteriol.
175:2844-2852 |
| 33. | Poyart-Salmeron, C., P. Trieu-Cuot, C. Carlier, and P. Courvalin. 1989. Molecular characterization of the two protein involved in the excision of the conjugative transposon Tn1545: homologies with other site specific recombinases. EMBO J. 8:2425-2433[Medline]. |
| 34. | Quale, J., D. Landman, G. Saurina, E. Atwood, V. DiTore, and K. Patel. 1996. Manipulation of a hospital antimicrobial formulatory to control an outbreak of vancomycin-resistant enterococci. Clin. Infect. Dis. 23:1020-1025[Medline]. |
| 35. |
Rauch, P. G. H., and W. DE Vos.
1994.
Identification and characterization of genes involved in excision of the Lactococcus lactis conjugative transposon Tn5276.
J. Bacteriol.
176:2165-2171 |
| 36. | Rice, L. B., and L. L. Carias. 1994. Studies on excision of conjugative transposons in enterococci: evidence for joint sequences composed of strands with unequal numbers of nucleotides. Plasmid 31:312-316[Medline]. |
| 37. |
Rice, L. B.,
G. M. Eliopoulos,
C. Wennersten,
D. Goldmann,
G. A. Jacoby, and R. C. Moellering, Jr.
1991.
Chromosomally mediated -lactamase production and gentamicin resistance in Enterococcus faecalis.
Antimicrob. Agents. Chemother.
35:272-276 |
| 38. |
Rice, L. B.,
S. H. Marshall, and L. L. Carias.
1992.
Tn5381, a conjugative transposon identifiable as a circular form in Enterococcus faecalis.
J. Bacteriol.
174:7308-7315 |
| 39. |
Rose, R. E.
1988.
The nucleotide sequence of pACYC184.
Nucleic Acids Res.
16:355 |
| 40. | Schaberg, D. R., D. H. Culver, and R. P. Gaynes. 1991. Major trends in the microbial etiology of nosocomial infection. Am. J. Med. 91:72S-75S[Medline]. |
| 41. |
Shlaes, D. M.,
L. Etter, and L. Gutmann.
1991.
Synergistic killing of vancomycin-resistant enterococci of classes A, B, and C by combinations of vancomycin, penicillin, and gentamicin.
Antimicrob. Agents Chemother.
35:776-779 |
| 42. | Su, Y., and D. B. Clewell. 1993. Characterization of the left 4 kb of conjugative transposon Tn916: determinants involved in excision. Plasmid 30:234-250[Medline]. |
| 43. |
Su, Y. A.,
P. He, and D. B. Clewell.
1992.
Characterization of the tet(M) determinant of Tn916: evidence for regulation by transcriptional attenuation.
Antimicrob. Agents Chemother.
36:769-778 |
| 44. | Su, Y. A., P. He, and D. B. Clewell. 1992. Characterization of the tet(M) determinant of Tn916: evidence for regulation by transcriptional attenuation. Antimicrob. Agents Chemother. 36:769-778. |
| 45. |
Swinfield, T.-J.,
J. D. Oultram,
D. E. Thompson,
J. K. Brehm, and N. P. Minton.
1990.
Physical characterization of the replication region of Streptococcus faecalis plasmid pAM 1.
Gene
87:79-90[Medline].
|
| 46. | Thorisdottir, A. S., L. L. Carias, S. H. Marshall, M. Green, M. J. Zervos, C. Giorgio, L. A. Mermel, J. M. Boyce, A. A. Medeiros, H. Fraimow, and L. B. Rice. 1994. IS6770, an enterococcal insertion-like element useful for determining the clonal relationship of clinical enterococcal isolates. J. Infect. Dis. 170:1539-1548[Medline]. |
| 47. | Williamson, R., S. Al-Obeid, J. H. Shlaes, F. W. Goldstein, and D. M. Shlaes. 1989. Inducible resistance to vancomycin in Enterococcus faecalis D366. J. Infect. Dis. 159:1095-1104[Medline]. |
| 48. |
Zorzi, W.,
X. Y. Zhou,
O. Dardenne,
J. Lamotte,
D. Raze,
J. Pierre,
L. Gutmann, and J. Coyette.
1996.
Structure of the low-affinity penicillin-binding protein 5 PBP5fm in wild-type and highly penicillin-resistant strains of Enterococcus faecalis.
J. Bacteriol.
178:4948-4957 |
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