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Journal of Bacteriology, September 1998, p. 4576-4582, Vol. 180, No. 17
0021-9193/98/$04.00+0
Copyright © 1998, American Society for Microbiology. All rights reserved.
Two-Step Autocatalytic Processing of the Glutaryl
7-Aminocephalosporanic Acid Acylase from Pseudomonas sp.
Strain GK16
Young Sik
Lee and
Sung Soo
Park*
Graduate School of Biotechnology, Korea
University, Seoul 136-701, Korea
Received 19 March 1998/Accepted 22 June 1998
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ABSTRACT |
The glutaryl-7-aminocephalosporanic acid (GL-7-ACA) acylase of
Pseudomonas sp. strain GK16 is an (
)2
heterotetramer of two nonidentical subunits. These subunits are derived
from nascent polypeptides that are cleaved proteolytically between
Gly198 and Ser199 after the nascent polypeptides have been translocated
into the periplasm. The activation mechanism of the GL-7-ACA acylase has been analyzed by both in vivo and in vitro expression studies, site-directed mutagenesis, in vitro renaturation of inactive enzyme precursors, and enzyme reconstitution. An active enzyme complex was
found in the cytoplasm when its translocation into the periplasm was
suppressed. In addition, the in vitro-expressed GL-7-ACA acylase was
processed into
and
subunits, and the inactive enzyme aggregate of the precursor was also processed and became active during the renaturation step. Mutation of Ser199 to Cys199 and enzyme
reconstitution allowed us to identify the secondary processing site
that resides in the
subunit and to show that Ser199 of the
subunit is essential for these two sequential processing steps. Mass
spectrometry clearly indicated that the secondary processing occurs at
Gly189-Asp190. All of the data suggest that the enzyme is activated
through a two-step autocatalytic process upon folding: the first step
is an intramolecular cleavage of the precursor between Gly198 and Ser199 for generation of the
subunit, containing the spacer peptide, and the
subunit; the second is an intermolecular event, which is catalyzed by the N-terminal Ser (Ser199) of the
subunit and results in a further cleavage and the removal of the spacer peptide
(Asp190 to Gly198).
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INTRODUCTION |
The glutaryl-7-aminocephalosporanic
acid (GL-7-ACA) acylase (EC 3.5.1.11) of Pseudomonas sp.
strain GK16 deacylates GL-7-ACA to 7-aminocephalosporanic acid (7-ACA),
which is a starting material for the synthesis of semisynthetic cephem
antibiotics (9, 10). The nascent polypeptide of the enzyme
is synthesized as a 74-kDa polypeptide containing sequences coding for
a signal peptide and 16-kDa
and 54-kDa
subunits, and the
removal of the signal peptide gives rise to an inactive 70-kDa
precursor, which has been suggested to be processed at a single site
between Gly198 and Ser199 into 16-kDa
and 54-kDa
subunits in
the periplasm (17). The active GL-7-ACA acylase is an
(
)2 heterotetramer complex (10, 17).
The genes coding for this enzyme and other cephalosporin acylases from
several Pseudomonas species have been cloned into
Escherichia coli, and the enzymes were analyzed
biochemically (1, 13, 14, 17, 18). The enzymes were
efficiently processed and were found to be fully active even in a
foreign host, E. coli. The enzymes are either a
heterotetramer or a heterodimer of
and
subunits which are
formed from each single-chain precursor protein. Noteworthy is the high
conservation of the Ser residues at the N termini of the
subunits
in both cephalosporin and penicillin acylases (1, 2, 6, 11, 14,
17, 18, 20, 21, 27). Recently, it was revealed that the
N-terminal Ser residue of the
subunit of penicillin G acylase from
E. coli could act as a nucleophile in both catalysis and
processing and that the analogous residue in a cephalosporin C acylase
from Pseudomonas sp. strain N176 might also be active in
catalysis (4, 7, 11, 12). Other enzymes, so called Ntn
(N-terminal nucleophile) hydrolases, have also been reported to be
autocatalytically activated by the nucleophilic attack of the
N-terminal amino acid residues of the
-subunits (4, 8, 15, 28,
30, 31).
To investigate the activation mechanism of the GL-7-ACA acylase
precursor, we expressed the enzyme in a cell-free
transcription-translation system. We also investigated the importance
of a conserved Ser residue in the enzyme by site-directed mutagenesis
and investigated the activation mechanism of the enzyme by the
refolding of inactive precursors in vitro and enzyme reconstitution.
Here, we report that the enzyme precursor autocatalytically converts to
the
and
subunits and that a conserved Ser residue in the
subunit is necessary for both enzyme activity and processing.
Furthermore, another processing site is found to exist in the
subunit, and the removal of a spacer peptide is required for the
activation of the enzyme. Our data also imply that the enzyme is
activated by a two-step autocatalytic mechanism, the first step of
which is an intramolecular cleavage of the precursor at the primary processing site, generating an N-terminal Ser in the
subunit, and
the second step of which is the intermolecular removal of a spacer
peptide in the
subunit catalyzed by the N-terminal Ser of the
subunit.
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MATERIALS AND METHODS |
Recombinant DNA and mutagenesis.
The plasmid pGAP18,
harboring the cloned GL-7-ACA acylase gene from Pseudomonas
sp. strain GK16 was described previously (14). The
expression vector pTrxFus, containing the promoter
PL,
and E. coli GI724 (Invitrogen) were used to construct two
recombinant expression plasmids, pTSG and pTNSG (Fig.
1), which carry fusions of thioredoxin to
the nascent and mature enzymes, respectively. The sequences and
annealing sites of three primers used for PCR are shown in Fig. 1, and
plasmid pGAP18 was used as a template. The PCR products encoding the
nascent and mature GL-7-ACA acylases were cloned into the
KpnI/SmaI and XbaI sites of the
pTrxFus vector. For coupled in vitro transcription-translation
reactions, each thioredoxin-GL-7-ACA acylase (TGA) fusion from the
pTSG and pTNSG plasmids was subcloned into the NdeI and
HindIII sites of the pET23a (Novagen) vector, containing
the T7 RNA polymerase promoter. Site-directed mutations of Ser199 at
the primary cleavage site of the enzyme precursor and a
His6 tag at the C terminus of each fusion protein for its
easy purification were introduced by using the megaprimer method
(26) with a reverse primer containing an extra
His6-coding sequence. As primers for site-directed
mutagenesis and His6 tagging, the following
oligonucleotides were used (changes are underlined): forward primer,
5'-GAGATATACATATGGCTAGCATGA-3'; mutagenic primers,
5'-CCCGGCGCCACCGCCCAGGAGTTGGCTCCTTGATC-3' (for Ser199Ala mutation) and
5'-CCCGGCGCCACCGCCCAGGAGTTGCATCCTTGATC-3' (for
Ser199Cys mutation); and a reverse primer containing an extra His6-coding sequence,
5'-AAAAAGCTTTCAGTGATGGTGATGGTGATGTGGCTTGAAGTTGAAGGGCG-3'. For the wild-type fusion protein with a His6 tag,
only the forward and reverse primers were used. Each amplified product
was cloned into the NdeI and HindIII sites of
the pET23a vector. All of the introduced mutations were confirmed by
DNA sequence analyses (25). For the unfused enzyme with only
the His6 tag, the following primers were used: forward
primer, 5'-AAACCCGGGGAGCCGACCTCGACGCCGCA-3', and reverse
primer, 5'-AAAAAGCTTTCAGTGATGGTGATGGTGATGTGGCTTGAAGTTGAAGGGCG-3'. The PCR products coding for mature wild-type and Ser199Cys mutant enzymes with His6 tags were digested with SmaI
and HindIII, cloned into a pET23d vector (Novagen) which
was restricted with NcoI, filled in with Klenow enzyme, and
subsequently digested with HindIII. All forward and
reverse primers used in PCR had restriction enzyme sites at each 5'
end, and the gene manipulation applicable to E. coli was
carried out as described by Sambrook et al. (24). All
plasmids used for this study are described in Fig.
2.

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FIG. 1.
Strategy for the construction of plasmids pTSG and
pTNSG. Plasmid pGAP18 was used as a template in PCR. SP, DNA fragment
coding for the signal peptide of GL-7-ACA acylase; F1 and F2, forward
primers; R, reverse primer. The underlined sequences are restriction
enzyme sites (KpnI, SmaI, and XbaI,
respectively) attached to the annealing site of each primer.
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FIG. 2.
Recombinant plasmids used in this study. Numbers on the
bars and lines denote the mass of each peptide or subunit, and the line
stands for mature GL-7-ACA acylase gene. PL,
PL promoter; Trx, thioredoxin-coding sequence; SP,
signal peptide-coding sequence; T7, T7 promoter; Ser-199, Ser199 of a
nascent GL-7-ACA acylase polypeptide or the N-terminal Ser residue of
wild-type subunit; 6XHis, sequence encoding six histidine residues.
The plasmid pGAP18 has been described previously (14).
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Enzyme assay.
The GL-7-ACA acylase assay was based on
colorimetric measurement of 7-ACA released from the substrate GL-7-ACA
as described previously (14). One unit of the enzyme
releases 1 µmol of 7-ACA per min at 37°C under the enzyme assay
conditions used.
In vitro transcription and translation reactions.
The
various 35S-labeled proteins were made by using a coupled
transcription and translation system (STP2; Novagen). Briefly, 0.5 mg
of DNA was added directly to the STP2 T7 transcription mixture, and the
reaction was carried out for 20 min at 30°C. The STP2 T7
transcription reaction mixture was then mixed with [35S]methionine and STP2 translation mixture and
incubated for 1 h at 30°C, followed by a cold chase reaction
with unlabeled methionine for 30 min at 30°C. The
35S-labeled proteins were analyzed by sodium dodecyl
sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and fluorography.
Expression and purification of recombinant proteins.
E.
coli GI724 cells harboring pTSG and pTNSG plasmids encoding TGA
fusions were grown in induction medium (6 g of
Na2HPO4, 3 g of
KH2PO4, 0.5 g of NaCl, 1 g of
NH4Cl, 2 g of Casamino Acids, and 0.095 g of
MgCl2 per liter) to an optical density at 550 nm of about
0.5 at 30°C and induced with tryptophan at a final concentration of
100 µg/ml for 2 h at 37°C. E. coli BL21(DE3) cells
harboring each plasmid encoding wild-type and mutant thioredoxin enzyme fusions or mature enzymes with the C-terminal His6 tag were
grown in Luria-Bertani medium at 37°C to an optical density at 550 nm of about 0.5 and induced with 0.4 mM
isopropyl-1-thio-
-D-galactopyranoside for 2 h at
37°C. The cells were harvested by low-speed centrifugation (3,000 × g, 10 min). The cell pellets were resuspended
in 20 mM Tris (pH 8.0)-100 mM NaCl-10% glycerol-0.1% Triton X-100
and lysed by sonication. The lysates were divided into soluble and
insoluble fractions by high-speed centrifugation (15,000 × g, 20 min), and each fraction was used for the analysis and
purification of expressed proteins.
Purification of native or denatured His
6 proteins was
performed by using TALON metal affinity resin (Clontech) according to
the supplier's instructions. The His
6 proteins were
purified by
a batch method, and sonication buffer with 6 M urea was
used for
the purification of denatured His
6 proteins. Each
His
6 protein
was eluted with buffer containing 100 mM EDTA.
In vitro renaturation of inactive precursors.
Renaturation
of purified inactive precursor was performed by a 15-fold dilution with
renaturation buffer (20 mM Tris-HCl [pH 8.0] and 100 mM NaCl) at
25°C. The refolding mixtures were subjected to SDS-PAGE, and in vitro
processing was examined by staining with Coomassie blue R-250 or
Western blot analysis.
Reconstitution of enzymes.
For purification of the
thioredoxin-
subunit of GL-7-ACA acylase (TG
) and
subunit of
GL-7-ACA acylase with a His6 tag (H
) subunits from
wild-type and Ser199Cys mutant fusion proteins, purified native fusion
proteins were dialyzed against 20 mM Tris-HCl (pH 8.0)-100 mM
NaCl-10% glycerol-0.1% Triton X-100 for the removal of EDTA and
subsequently concentrated by using a Microcon 10 (Amicon). After the
subunits of the fusion proteins were dissociated with 6 M urea, they
were purified with TALON resin on the basis of the fact that only the
H
subunit can bind to the resin. The protein concentration was
determined by the Bradford method (3) with bovine serum
albumin as a standard. For enzyme reconstitution, each denatured and
purified subunit was mixed at a molar ratio of 1:1 in cis
(within the same precursor) or in trans (between the wild
type and the Ser199Cys mutant), and diluted 15-fold with renaturation
buffer at 25°C for 12 h so that the enzymes could be
reconstituted.
Western blot analysis.
Western blotting was carried out by
the procedure described by Towbin et al. (33). The proteins
on SDS-PAGE (10% acrylamide) were electroblotted to nitrocellulose
paper and detected by anti-Thio and anti-His6 mouse
monoclonal antibodies (commercially available from Invitrogen and
Clontech, respectively). Sheep anti-mouse immunoglobulin G conjugated
with horseradish peroxidase and ECL detection reagents (Amersham) were
used as the secondary antibody and the detection solutions,
respectively.
N-terminal amino acid sequencing and determination of C-terminal
amino acid residue.
N-terminal amino acid sequence determination
was performed on an Applied Biosystems 491 protein sequencer fitted
with a high-pressure liquid chromatography on-line system. Purified
native and in vitro-refolded fusion proteins of the wild type and the
Ser199Cys mutant were subjected to electrophoresis on a 10%
polyacrylamide gel and electroblotted to a polyvinylidine difluoride
membrane according to the procedure of Matsudaira (19). The
membrane was stained with Coomassie blue R-250, and the protein bands
of the H
subunit were excised and subjected to sequential Edman
degradation. The C-terminal amino acid of the wild-type
subunit was
determined as follows: (i) purification of
subunits from wild-type
and Ser199Cys mutant nonfusion proteins, (ii) measurement of the mass
of each
subunit by MALDI (matrix-assisted laser
desorption-ionization) mass spectrometry with a Kratos Kompact MALDI II
instrument (29), and (iii) comparison of the measured masses
with molecular masses calculated from the deduced amino acid sequence
of the
subunit.
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RESULTS |
Construction and expression of TGA fusions in the cytoplasm.
The GL-7-ACA acylase is a periplasmic enzyme in Pseudomonas
sp. strain GK16 and has also been found to be correctly processed and
active in the periplasm when the cloned gene is expressed in E. coli (14, 17). These data indicate that after a nascent polypeptide is translocated into the periplasm, processing and heterotetramer formation of the active enzyme take place in this compartment and that a common activation mechanism or machinery must
operate in both Pseudomonas sp. strain GK16 and E. coli. To examine this process further, we constructed two
recombinant TGA fusion plasmids, pTSG and pTNSG; the former contains
the gene encoding the whole enzyme, including its 29-amino-acid signal peptide sequence, and the latter has only a DNA fragment encoding the
mature enzyme. The thioredoxin moiety appears not only to confer high
solubility on heterologous proteins but also to enable fusion proteins
to localize to the adhesion zones or Bayer's patches (16).
Only the soluble fraction of a cell extract from cells with pTNSG
contained a detectable level of two polypeptides generated
from the
cleavage of the fusion precursor (Fig.
3); one is the
32-kDa fusion protein
between thioredoxin and the

subunit, termed
TG

, and the other is
the normal

subunit with a mass of 54 kDa
(lane S3). No processing
could be detected in the inactive protein
aggregates from cells with
pTNSG and pTSG (Fig.
3, lanes P2 and
P3). The inefficiency of the
processing of soluble fusion proteins
generated from pTSG (lane S2) may
be due to the existence of a
signal peptide sequence between
thioredoxin and mature GL-7-ACA
acylase, and the signal peptide was
suggested to play a role in
maintaining a translocating protein in an
unfolded state (
22,
23). The soluble fraction from cells
with pTNSG had an approximately
3.5-fold-higher enzyme activity than
the same fraction from cells
with pTSG (Table
1), suggesting that enzyme activity is
related
to the degree of proteolytic processing of the enzyme precursor
and that its proteolytic processing may occur upon protein folding
in
the absence of signal peptide. The enzymatically active fusion
protein
expressed from pTNSG was localized within the osmotically
sensitive
cellular compartment, the adhesion zone, and not in
the periplasm (data
not shown). This indicates that although the
fusion protein expressed
from pTNSG was confined to the cytoplasm,
it could be activated in
this cellular compartment and that the
proteolytic cleavage of the
fusion precursor might occur by an
intrinsic property of the precursor,
such as autocatalytic processing.

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FIG. 3.
SDS-PAGE analyses of the expression and processing
patterns of TGA fusion proteins. Lane M, molecular mass markers; lanes
T1 to T3, total cell extracts; lanes S1 to S3, soluble fractions; lanes
P1 to P3, insoluble fractions from pTrxFus (vector)-, pTSG-, and
pTNSG-harboring E. coli GI724, respectively. The upper and
lower arrowheads in lane S3 denote the processed 54-kDa subunit and
32-kDa TG subunit, respectively. The arrow indicates each
unprocessed 86-kDa protein aggregate.
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TABLE 1.
GL-7-ACA acylase activities of TGA fusion proteins
expressed from pTSG- and pTNSG-harboring E. coli
GI724 cells
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Processing of in vitro-transcribed and -translated TGA fusion
proteins.
We could not exclude the possibility that
Pseudomonas sp. strain GK16 and E. coli possess a
common protease responsible for the proteolytic cleavage of GL-7-ACA
acylase. To determine whether the activation of the TGA fusion protein
is an autoproteolytic process, we synthesized the two TGA fusion
proteins described above by using in vitro- coupled transcription and
translation reactions. As shown in lanes 2 and 3 of Fig.
4, even in vitro-expressed fusion
precursors were normally cleaved into smaller fragments. As found in
vivo, a TGA fusion precursor containing a signal peptide was also
cleaved at a lower rate than the precursor without the signal peptide
in vitro. This result strongly suggests that the enzyme is cleaved
through an autocatalytic process, since the in vitro expression system
most likely does not contain any protease able to catalyze this
cleavage.

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FIG. 4.
Processing patterns of in vitro-expressed TGA fusion
proteins in coupled in vitro transcription and translation reactions.
Lane 1, in vitro-expressed -galactosidase as a positive control;
lanes 2 and 3, in vitro-expressed TGA fusion proteins from plasmids
pACY and pSER, respectively. The upper and lower arrowheads in lanes 2 and 3 denote the processed subunits and the TG subunits,
respectively, while the arrow denotes each unprocessed TGA fusion
precursor. The mass of the TG subunit in lane 2 is slightly higher
than that of the TG subunit in lane 3 because of the presence of the
signal peptide in the fusion.
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Effect of substitutions for Ser199 on the catalytic and processing
properties of a TGA fusion protein.
We chose a TGA fusion protein
without a signal peptide sequence for the further study of the
activation mechanism of GL-7-ACA acylase, since it was processed at an
appropriate rate. In addition, we tagged six His residues at the C
terminus of the TGA fusion protein for its easy purification with TALON
affinity resin. The TGA fusion protein containing the His6
tag is termed TGAH. To confirm that the TGA fusion protein is maturated
by an autocatalytic process, we expressed the TGAH fusion protein in
E. coli and isolated the inactive precursor as a denatured
protein. When the purified TGAH precursor was refolded, enzyme activity
was regained and the precursor was cleaved into smaller fragments, one
of which is the 32-kDa TG
and the other of which is the 54-kDa H
(Fig. 5). The enzyme activity was
regained in proportion to the degree of processing of the TGAH
precursor. The result demonstrates that a specific processing
intermediate does not exist (Fig. 5A) and that the processing occurs
through autocatalysis upon folding and is dependent on the proper
folding of the precursor.

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FIG. 5.
Time course of in vitro processing of inactive wild-type
TGAH fusion precursor expressed from plasmid pSERH (A) and enzyme
activity as a function of refolding time (B). (A) Purified inactive
wild-type TGAH fusion precursor was renatured at each indicated time
and immediately mixed and boiled for 10 min with sample application
buffer for SDS-PAGE. The conversion of the TGAH fusion precursor to
TG and H subunits was monitored by SDS-PAGE. Lane M, molecular
mass markers. The arrows, from the top to the bottom, indicate
unprocessed fusion precursor, H subunit, and TG subunit,
respectively. (B) The enzyme activity of each refolding mixture at
various times was assayed as described in Materials and Methods.
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Alignment of the amino acid sequences of the GL-7-ACA acylase with
those of other known cephalosporin and penicillin acylases
identified a
conserved Ser at the processing site of each enzyme
(
1,
2,
6,
11,
14,
17,
18,
20,
21,
27);
after processing, this Ser is at the N
terminus of the

subunit.
To study the role of Ser199 in catalysis
and in the maturation
process, we mutagenized this residue to either
Ala or Cys. Strains
carrying the mutations exhibited no enzyme
activity, suggesting
a functional role of Ser199 similar to that of
Ser290 of penicillin
G acylase. SDS-PAGE analysis with TGAH fusion
proteins expressed
in vivo showed that the Ser199Cys mutant fusion
precursor was
cleaved proteolytically, resulting in a normal H

subunit and
a TG

polypeptide slightly larger than that of the wild
type (Fig.
6A, lane 3), whereas the
replacement of Ser199 with Ala blocked
the cleavage of the TGAH fusion
precursor (Fig.
6A, lane 4). Processing
and enzyme activity of
renatured wild-type and mutant fusion precursors
were similar to those
of in vivo-expressed proteins (Fig.
6B).
N-terminal sequence analysis
of the wild-type and Ser199Cys H
subunits generated from in vivo
purification and in vitro processing
showed that the processing was at
the right place, i.e., at the
N-terminal side of residue 199 (data not
shown). To exclude any
artificial effect of thioredoxin on the enzyme
activity and processing,
we made both wild-type and Ser199Cys variants
to which only the
His
6 tag was attached at the C terminus,
purified the precursors,
and examined protein refolding. In vitro
processing of both the
wild-type and Ser199Cys precursors of
these latter fusions was
the same as that of the TGAH fusions, showing
that the presence
of thioredoxin did not affect autoproteolysis and
enzyme activity
(Fig.
7). In vivo
processing and enzyme activities were also the
same with the two types
of fusions (data not shown). To determine
whether the proteolytic
activity of the enzyme could act in
trans,
purified active
wild-type TGAH fusion protein was added to a refolding
mixture of
inactive wild-type precursor, and an aliquot of the
protein sample was
withdrawn at various times and analyzed for
enhanced processing rate of
the wild-type precursor. The result
showed that the proteolytic
cleavage of the enzyme precursor must
occur only in
cis in a
folding-dependent manner, since the processing
rate of the inactive
wild-type precursor was not enhanced by active
enzyme (data not shown).
These results also indicate that a hydroxyl
or sulfhydryl side chain at
position 199 may be required for processing
of the precursor. The fact
that only the wild-type fusion protein,
and not the Ser199Cys mutant,
retained enzyme activity suggests
that a hydroxyl residue at the N
terminus of the

subunit is
required for enzyme activity. Thus, the
hydroxyl residue of Ser199
could be involved in processing as well as
in the enzyme activity.

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FIG. 6.
In vivo (A) and in vitro (B) processing patterns of
wild-type and mutant TGAH fusion precursors analyzed by SDS-PAGE and
immunoblotting, respectively. (A) Lane M, molecular mass markers; lane
1, total cell lysate from cells with vector pET23a as a negative
control; lanes 2 to 4, total cell lysates from cells with plasmids
pSERH, pCYSH, and pALAH, respectively. From top to bottom, the
arrowheads in lanes 2 and 3 denote the H and TG subunits,
respectively. Note that the TG subunit generated from plasmid pCYSH
is slightly larger than that of the wild type (lane 3). The arrow
indicates each expressed protein aggregate. + and , presence and
absence of enzyme activity, respectively. (B) Immunoblotting of
purified inactive precursors and renatured proteins with monoclonal
antibodies against thioredoxin and His6 tag, respectively.
Lanes 1, 3, and 5, before renaturation; lanes 2, 4, and 6, after
renaturation of the precursors expressed from plasmids pSERH, pALAH,
and pCYSH, respectively. The upper arrow denotes each purified inactive
fusion precursor, and the upper and lower arrowheads in lanes 3 and 6 indicate H and TG subunits, respectively. + and , acquisition
or total lack of enzyme activity, respectively.
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FIG. 7.
In vitro processing pattern of unfused inactive
wild-type and Ser199Cys mutant GL-7-ACA acylase precursors. Unfused
precursors expressed from pSH and pCH were renatured and then subjected
to SDS-PAGE. Lane M, molecular mass markers; lanes 1 and 2, before
renaturation; lanes 3 and 4, after renaturation of the unfused
precursors expressed from plasmids pSH and pCH, respectively. The large
arrow denotes each purified inactive precursor, and the upper and lower
arrowheads indicate the H subunit and the subunit containing
extra amino acids, Met and Gly, at its N terminus, respectively. + and
, acquisition or total lack of enzyme activity, respectively.
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Enzyme reconstitution and identification of secondary processing
site.
As described in the previous section, replacement of Ser199
with Cys resulted in a TG
polypeptide slightly larger than that of
the wild type generated by proteolytic cleavage. Since N-terminal sequence analysis revealed that cleavage occurred correctly at the
N-terminal side of residue 199 of wild-type or Ser199Cys mutant GL-7-ACA acylase, the larger TG
polypeptide from the Ser199Cys mutant may result from a lack of cleavage at another processing site
existing in the
subunit of the enzyme. The lack of enzyme activity
of the Ser199Cys mutant fusion protein might then be due to either the
incomplete processing of the TG
subunit or the Cys residue at the N
terminus of its H
subunit. To test these possibilities, we purified
the TG
and H
subunits from wild-type and Ser199Cys mutant fusion
proteins in the denatured condition and reconstituted the enzyme by
refolding. The enzyme was active when it was reconstituted with the
combination of TG
and H
subunits derived from the wild-type
fusion protein but not when it was reconstituted with the normal TG
subunit from the wild type and the H
subunit from Ser199Cys mutant,
indicating that the hydroxyl residue of Ser199 was necessary for the
enzyme activity (Fig. 8, lanes 5 and 6;
Table 2). In the reconstitution of the
larger TG
subunit with either wild-type or Ser199Cys mutant H
subunit, only the former reconstitution restored enzyme activity, with a partial conversion of the larger TG
subunit to the normal
wild-type one (Fig. 8, lanes 7 and 8; Table 2). This demonstrated that the removal of a spacer peptide was required for the enzyme activity and that the hydroxyl residue of Ser199 played an essential role in
this secondary processing as well as in the primary one.

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FIG. 8.
Protein profile of each reconstituted TGAH fusion
protein. Lane M, molecular mass markers; lanes 1 and 3, purified H
and TG subunits from plasmid pSERH; lanes 2 and 4, purified H and
TG subunits from plasmid pCYSH; lane 5, reconstitution of H and
TG subunits from plasmid pSERH; lane 6, reconstitution of H
subunit from plasmid pCYSH with TG subunit from plasmid pSERH; lane
7, reconstitution of H subunit from plasmid pSERH with TG subunit
from plasmid pCYSH; lane 8, reconstitution of H and TG subunits
from plasmid pCYSH. From top to bottom, the arrows indicate the H
subunits from either pSERH or pCYSH, the TG subunit from plasmid
pCYSH, and the TG subunit from plasmid pSERH, respectively. The
arrowhead indicates a further processed TG subunit from plasmid
pCYSH.
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The secondary processing site of the GL-7-ACA acylase precursor was
identified by analysis of the normal and larger

subunits
purified
from nonfusion wild-type and Ser199Cys mutant enzyme
by using MALDI
mass spectrometry. The secondary processing site
was located between
Gly189 and Asp190 in the enzyme precursor
(Fig.
9).

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|
FIG. 9.
Amino acid sequence showing the primary (arrow 1) and
secondary (arrow 2) processing sites in the GL-7-ACA acylase
precursor.
|
|
Inhibition studies of GL-7-ACA acylase.
The studies of
Ser199Cys substitution and reconstitution clearly indicated the
essential role of Ser199 of the
subunit. To examine whether the
enzyme activity and the autoproteolytic activation of GL-7-ACA acylase
are inhibited by serine protease inhibitors, GL-7-ACA acylase, its
precursor, penicillin G acylase, and other serine protease-type enzymes
were treated with the inhibitors (Table
3). In all cases the activity of trypsin
was completely inhibited. Interestingly, the enzyme activity of
penicillin G acylase was completely inhibited with phenylmethylsulfonyl
fluoride (PMSF) (30), whereas GL-7-ACA acylase activity was
not affected. Diisopropylphosphofluoridate (DFP), which is a potent
inhibitor of serine protease, inhibited neither GL-7-ACA acylase nor
penicillin G acylase. The autoproteolytic activation of GL-7-ACA
acylase was also not affected by the inhibitors.
 |
DISCUSSION |
The correct processing and formation of GL-7-ACA acylase in the
cytoplasm suggested to us that the activation of the enzyme might be an
intrinsic property of the protein. This was further suggested by proper
cleavage of the precursor translated in the rabbit reticulocyte lysate
system and the complete processing and gain of enzymatic activity upon
renaturation of the purified inactive precursor.
It has been suggested that the GL-7-ACA acylase precursor of
Pseudomonas sp. strain GK16 has a single cleavage site
located between Gly198 and Ser199 for the generation of
and
subunits (17). In this study, we have identified a secondary
processing site upstream of the primary processing site in the
precursor. The secondary processing site is located between Gly189 and
Asp190, and the removal of a nine-amino-acid spacer peptide is
necessary for the activation of the enzyme. Interestingly, the Gly-Asp
sequence is also present with the spacing of eight amino acids from the Ser residue at the primary processing site, Gly-Ser, in the
cephalosporin C acylase precursor of Pseudomonas sp. strain
SE83 (18), although it is unknown whether this cephalosporin
C acylase also requires secondary processing for the activation of the
enzyme. It will be of interest to see if this cephalosporin C acylase
precursor is processed by autoproteolysis and undergoes the secondary
processing between Gly and Asp for the activation of the enzyme. It has
been reported that the absence of a signal peptide in the penicillin G
acylase precursor blocked the secondary processing of the
subunit,
removing a spacer peptide, and decreased the primary processing
efficiency of the
subunit (5). In contrast, in this
study, the absence of a signal peptide in the enzyme precursor did not
prevent the precursor from removing a spacer peptide by complete
autoproteolysis both in vivo and in vitro and suggested that the
processing was folding related as well (Fig. 7).
In this study we have identified the hydroxyl group of Ser199 of
GL-7-ACA acylase as being involved in autoproteolysis and enzyme
activity. The replacement of a highly conserved amino acid residue,
Ser199, with Cys resulted in an incomplete processing in which the
proteolytic cleavage took place only at the primary processing site
both in vivo and in vitro and consequently resulted in a total loss of
GL-7-ACA acylase activity. The in vitro primary processing rate of the
Ser199Cys mutant precursor was lower than that of the wild type (Fig.
7). However, it should be noted that the primary processing is very
specific; the NH2-terminal amino acid sequence of the
subunit of the Ser199Cys mutant is identical to that of the wild type
except for the first amino acid (Cys for Ser). The fact that the
hydroxyl or sulfhydryl group of residue 199 is required for the primary
processing led us to think that the specific cleavage is mediated by
the nucleophilic attack of the side chain of residue 199, just as the
hydroxyl group of serine protease cleaves the substrate by its
nucleophilic attack. However, enzyme reconstitution experiments showed
that a Cys at residue 199 does not catalyze the secondary processing
step. If the hydroxyl or sulfhydryl groups of residue 199 in wild-type
and Ser199Cys mutant enzyme precursors act only as a nucleophile in the
processing reactions, the decreased primary processing rate and lack of
secondary processing and enzyme activity of the Ser199Cys mutant must
presumably result from a defect such as structural hindrance due to the
physical properties of the sulfhydryl group, since the sulfhydryl group of cysteine has a higher nucleophilicity than the hydroxyl group of
serine.
In contrast to the lack of secondary processing due to the sulfhydryl
group of residue 199 in the enzyme precursor, replacement of the
corresponding Ser residue in the penicillin G acylase precursor with
Cys allowed both secondary and primary processing of the precursor but
resulted in the loss of enzyme activity (5). Since the
variant in which Ser199 was replaced by Ala gave neither processing nor
enzyme activity, our results unambiguously demonstrate that Ser199 at
the primary processing site plays an active role in the complete
processing of autoproteolysis as well as in enzyme activity. The
results also suggest that the GL-7-ACA acylase precursor is processed
through two sequential steps of autocatalysis, the first being an
intramolecular cleavage of the precursor at the primary processing site
for the generation of the N-terminal Ser199 residue of the
subunit
and the second being an intermolecular cleavage for the removal of the
spacer peptide in the
subunit catalyzed by the N-terminal Ser-199
of the
subunit.
Penicillin G acylase, proteasome
subunit, glutamine
amidotransferase, and aspartylglucosaminidase have recently been
suggested to form a novel class of Ntn (N-terminal nucleophile)
hydrolases. All of these hydrolases have a common structural motif and
an N-terminal catalytic amino acid: Ser in penicillin G acylase, Thr in
proteasome
subunit and aspartylglucosaminidase, and Cys in
glutamine amidotransferase. It has been suggested that the
amino
group of the N-terminal catalytic amino acid could function as a base
that increases the nucleophilicity of the hydroxyl or sulfhydryl group.
In addition, autocatalytic processing from an inactive precursor
polypeptide seems to be common to these hydrolases. In the case of
penicillin G acylase, 1 mol of PMSF/mol of the enzyme completely and
rapidly inactivated the enzyme (30), but it has not been
reported that the processing of the enzyme precursor is inhibited under
the same conditions. Unexpectedly, both PMSF and DFP did not inhibit
the enzyme activity and autoproteolytic maturation of GL-7-ACA acylase,
although penicillin G acylase, which belongs to the Ntn hydrolase
superfamily, used as a control was rapidly and completely inactivated
with PMSF. Our current data do not clearly indicate the exact role of
the N-terminal Ser residue of the
subunit, since the Ser residue is
essential in the substitution studies but it is not a catalytic center
as judged by the lack of inhibition by several serine protease
inhibitors, such as DFP, PMSF, and 4-amidinophenylmethylsulfonyl
fluoride. At this point, it is not clear whether the enzyme is a member of the Ntn hydrolase superfamily or not. We believe, however, that the
enzyme may be a member of the Ntn hydrolase superfamily, since it is
highly homologous to penicillin G acylase and the N-terminal Ser199 of
the
subunit is essential for the autoproteolytic activation and
catalytic activity of the enzyme. Crystallization of the enzyme is
under way. We expect that the crystal structure of the enzyme will help
us solve this problem.
This study is the first characterization of the autoproteolytic
activation of GL-7-ACA acylase, a cephalosporin acylase. In case of
aspartylglucosaminidase, an (
)2 heterotetramer,
dimerization of two inactive precursor molecules has been suggested to
be the triggering event resulting in the autoproteolytic activation
(32). It remains to be determined what the structural motif
of GL-7-ACA acylase is and whether the dimerization of two inactive
enzyme precursors precedes the autocatalytic processing of the
precursor. It is obvious, however, that the processing of the enzyme
occurs within a fold in cis, since neither the active enzyme
nor
subunit which was added during in vitro renaturation of the
enzyme precursor increased the processing rate in trans. The
detailed autoproteolytic mechanism for the activation of GL-7-ACA
acylase also remains to be determined.
 |
ACKNOWLEDGMENTS |
This research was supported by the Highly Advanced Project of the
Ministry of Science and Technology, Republic of Korea.
We are very grateful to Roy H. Doi, University of California, Davis,
for his critical comments and discussion of the manuscript.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Graduate School
of Biotechnology, Korea University, Seoul, Korea 136-701. Phone:
8202-3290-3431. Fax: 8202-929-1864. E-mail:
sspark{at}kuccnx.korea.ac.kr.
 |
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