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Journal of Bacteriology, September 1998, p. 4650-4657, Vol. 180, No. 17
0021-9193/98/$04.00+0
Copyright © 1998, American Society for Microbiology. All rights reserved.
Intraspecific Variation of Unusual Phospholipids
from Corynebacterium spp. Containing a Novel Fatty
Acid
Tanja
Niepel,1
Holger
Meyer,2
Victor
Wray,2 and
Wolf-Rainer
Abraham1,*
Department of
Microbiology1 and
Department of
Structure Research,2 Gesellschaft für
Biotechnologische Forschung mbH, D-38124 Braunschweig, Germany
Received 26 January 1998/Accepted 16 June 1998
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ABSTRACT |
The novel fatty acid trans-9-methyl-10-octadecenoic
acid was isolated from the coryneform bacterial strain LMG 3820 (previously misidentified as Arthrobacter globiformis) and
identified by spectroscopic methods and chemical derivatization. This
fatty acid is attached to the unusual lipid acyl phosphatidylglycerol.
Five different species of this lipid type were identified; their
structures were elucidated by tandem mass spectrometry and are reported
here for the first time. Additionally, we identified three different
cardiolipins, two bearing the novel fatty acid. The characteristic
10-methyl-octadecanoic acid was present only in phosphatidylinositol.
Because of the unusual fatty acid pattern of strain LMG 3820, the 16S
rDNA sequence was determined and showed regions of identity to
sequences of Corynebacterium variabilis DSM
20132T and DSM 20536. All three strains possessed the novel
fatty acid, identifying trans-9-methyl-10-octadecenoic acid
as a potential biomarker characteristic for this taxon. Surprisingly,
the fatty acid and relative abundances of phospholipids of
Corynebacterium sp. strain LMG 3820 were similar to those
of the type strain but different from those of Corynebacterium
variabilis DSM 20536, although all three strains possessed
identical 16S rDNA sequences and strains DSM 20132T and DSM
20536 have 90.5% DNA-DNA homology. This is one of the rare cases
wherein different organisms with identical 16S rDNA sequences have been
observed to present recognizably different fatty acid and lipid
compositions. Since methylation of a fatty acid considerably lowers the
transition temperature of the corresponding lipid resulting in a more
flexible cell membrane, the intraspecific variation in the lipid
composition, coinciding with the morphological and Gram stain reaction
variability of this species, probably offers an advantage for this
species to inhabit different environmental niches.
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INTRODUCTION |
Coryneform bacteria are
gram-positive microorganisms which are widely distributed in the
environment. Among the explanations advanced for the numerical
predominance of some of these bacteria in soil are their extreme
resistance to drying and to starvation and the nutritional versatility
of the commonly occurring species (21). The group comprises
various degraders, e.g., of chlorophenol (27), cyanide
(11), or diphenyls (16) and amino acid producers and is therefore of environmental and biotechnological interest. The
characterization and identification of coryneform bacteria are of
particular interest because of their biotechnological potential and
because conventional identification methods often fail for these
organisms.
We have applied two chemotaxonomic methods, namely, gas chromatographic
(GC) analysis of fatty acid methyl esters of glyco- and phospholipids
and fast atom bombardment (FAB)-mass spectrometry (MS) of glyco- and
phospholipids, to analyze strains belonging to the majority of the
validly described species of the genera Agromyces,
Aeromicrobium, Arthrobacter,
Aureobacterium, Cellulomonas, Curtobacterium, Nocardioides, and
Terrabacter. Analysis of the polar lipids of these strains
by FAB-MS led to spectra which can serve as "fingerprints" of these
lipids and allow rapid comparison between strains. These spectra
revealed ions which are characteristic for taxa of the coryneform
bacteria. Such compounds, which are characteristic for a group of
organisms, are called biomarkers and are very valuable for the
detection of these bacteria in bacterial communities. Especially in
combination with tandem MS (MS/MS), these ions can be analyzed and the
structures of the molecules from which they are derived can be
elucidated. In this way, a number of rare or novel lipids were detected
and their structures were elucidated (2, 32). The
combination of nuclear magnetic resonance (NMR), leading to
determination of the structure and configuration of the core of the
polar lipid, with MS/MS, allowing determination of the structures and
positions of the various fatty acids attached to this core, resulted in
fast and sensitive elucidation of the structures of these biomarkers.
In the course of our study, we detected in one of the strains, LMG
3820, assigned to the species Arthrobacter globiformis, a
composition of fatty acids quite different from that reported by other
authors. Previously A. globiformis was reported to have mainly saturated iso- and anteiso-fatty acids and
to produce mono-, digalacto-, and dimannopyranosyl lipids (34,
39), none of which are present in our strain. Consequently, we
have studied and characterized strain LMG 3820 in depth. Here we report
on the structures of the cardiolipins, phosphatidylglycerols, and phosphatidylinositol, together with those of the major unusual phospholipid, acyl phosphatidylglycerol (APG), found in this strain.
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MATERIALS AND METHODS |
Strains and culture medium.
Strain LMG 3820, assigned to
A. globiformis, was obtained from the Laboratorium voor
Microbiologie, Universiteit Gent, Ghent, Belgium; Corynebacterium
variabilis DSM 20132T and C. variabilis DSM
20536 were obtained from the German Collection of Microorganisms and
Cell Cultures (DSMZ), Braunschweig, Germany. They were cultured at
37°C in 1-liter shake flasks in a medium containing 20 g of
tryptone, 5 g of yeast extract, and 5 g of NaCl in 1 liter of
deionized water. The biomass was harvested, in the late logarithmic
phase of growth, after 72 h.
Polar lipid fatty acid analysis.
Lipids were extracted by a
modified Bligh-Dyer procedure (3), and fatty acid methyl
esters were generated and analyzed by GC as described previously
(37).
Thin-layer chromatography.
Thin-layer chromatography was
performed on 20- by 20-cm plates coated with 1-mm silica gel 60 with a
fluorescence indicator. The solvent system was
chloroform-methanol-ammonia (28%) (65/25/2.7, vol/vol/vol).
Quantitative determination of phospholipids.
Phospholipid
content was determined by high-pressure liquid chromatography via a
method recently described (17).
FAB-MS.
FAB-MS in the negative mode was performed on the
first of two mass spectrometers of a tandem high-resolution instrument
with an E1B1E2B2
configuration (JMS-HX/HX110A; JEOL, Tokyo, Japan) at a 10-kV
accelerating voltage. Resolution was set to 1:1,500. The JEOL FAB gun
was operated at 6 kV with xenon as the FAB gas. A mixture of
triethanolamine and tetramethylurea (2:1, vol/vol) was used as the
matrix.
MS/MS.
Negative daughter ion spectra were recorded by using
all four sectors of the tandem mass spectrometer. High-energy
collision-induced dissociation (CID) took place in the third field-free
region. Helium served as the collision gas at a pressure sufficient to reduce the precursor ion signal to 30% of the original value. The
collision cell was operated at ground potential. Resolution of MS2 was
set to 1/1,000. FAB CID spectra (linked scans of MS2 at a constant
magnetic-to-electric-field [B/E] ratio) were recorded with 300-Hz
filtering and a JEOL DA 7000 data system.
One- and two-dimensional (1D and 2D) NMR spectra were recorded in 7:3
CDCl3-CD3OD at 300 K on Bruker DMX-600 NMR (1D,
1H; 2D, correlated spectroscopy [COSY] and total
correlated spectroscopy [TOCSY] with a mixing time of 70 ms) and
ARX-400 NMR (1D, 1H, 13C, and 31P;
2D, 1H detected one-bond and multiple-bond 13C
multiple-quantum coherence spectra, HMQC and HMBC) spectrometers, respectively (35). 1H and 13C
chemical shifts are given in parts/million relative to internal trimethylsilyl, 31P chemical shifts are relative to
external H3PO4, and couplings are in hertz.
Infrared (IR) spectra were measured on KBr, using the diffuse reflected
IR Fourier transform (DRIFT) mode.
1,2-Diacylglycerylphospho-1'-monoacyl-glycerol.
Rf is 0.65 in chloroform-methanol-ammonia (28%)
(65/25/2.7, vol/vol/vol). IR (KBr) spectral analysis yielded the
following: 3,350 (br), 2,920, 2,850, 1,740, 1,600, 1,465, 1,385, 1,245, 1,175, 1,105, 1,075, 970, 820, and 720 cm
1.
16S rDNA sequencing.
Individual colonies were picked from
agar medium, suspended in 100 µl of Tris-EDTA buffer, and boiled for
15 min. The suspension was centrifuged briefly, and 1 µl of the
supernatant was used for PCR (29), with forward primer 16F27
and reverse primer 16R1492 (Escherichia coli 16S rRNA gene
position) (24). PCR was carried out with a GeneAmp 9600 thermocycler (Perkin-Elmer, Weiterstadt, Germany) and conditions
described previously (23). Amplified DNA was purified with
Microcon 100 microconcentrators (Amicon GmbH, Witten, Germany), and
quality was controlled with gel electrophoresis on a 1% agarose gel
with Tris-acetate-EDTA buffer and subsequent ethidium bromide staining.
The sequence of the amplified 16S rDNA gene was determined directly,
using an Applied Biosystems 373A DNA sequencer (Perkin-Elmer, Applied
Biosystems GmbH, Weiterstadt, Germany), standard 16S rRNA sequencing
primers (24), and the protocols recommended by the
manufacturer for Taq polymerase-initiated cycle sequencing
with fluorescent-dye-labeled dideoxynucleotides. Resulting
sequences were aligned with reference 16S and 16S rRNA gene sequences
(26, 38), using the evolutionarily conserved primary
sequence and secondary structure (15, 31) as references. Evolutionary distances (22) were calculated from complete
sequence pair dissimilarities, using only homologous, unambiguously
determined nucleotide positions. Phylogenetic trees were constructed
with the programs of the PHYLIP package (12).
DNA-DNA hybridization.
The analysis was done by DSMZ. The
DNA was isolated by chromatography on hydroxyapatite (4),
and DNA-DNA hybridizations were carried out by using a Gilford System
2600 spectrophotometer equipped with a Gilford 2527-R thermoprogrammer
and plotter (10).
Nucleotide sequence accession number.
The 16S rRNA gene
sequences determined have been deposited in the EMBL nucleotide
sequence database under accession no. AJ222815 to AJ222817.
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RESULTS |
A combination of MS/MS and multidimensional NMR techniques
provides a means of establishing the structure of the major component in the phospholipid fraction from the coryneform bacterium LMG 3820. Negative-mode FAB-MS of this fraction showed, in addition to
phosphatidylglycerols and cardiolipins, deprotonated molecular ions at
m/z 999, 1,011, 1,025, and 1,039 (Fig.
1). The differences in mass suggested the
presence of a homologous series of molecules arising from differences
in fatty acid composition. Indeed, major carboxylate anions for C15:0
(m/z 241), C16:0 (m/z 255), C18:1 (m/z
281), and C19:1 (m/z 295) were observed (Fig. 1). The C15:0, C16:0, and C18:1 fatty acids were identified from their fragmentation patterns in MS/MS experiments as n-pentadecanoic acid,
n-hexadecanoic acid (palmitic acid), and 9-octadecenoic acid
(oleic acid), respectively (data not shown) (18). The C19:1
fatty acid, however, displayed an unusual fragmentation pattern and
needed further investigation.

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FIG. 1.
Negative-mode FAB mass spectrum of the phospholipid
fraction of strain LMG 3820, showing acyl ions between m/z
250 and 300, phosphatidylglycerol ions (PGs) around m/z 750, phosphatidylinositol ions (PI) at m/z 851, APGs between
m/z 1,010 and 1,040, and cardiolipins (CLs) around
m/z 1,420. Note that there is only one phosphatidylinositol,
which is the only polar lipid to bear 10-methyl-octadecanoic acid.
REL., relative.
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Identification of this fatty acid by MS was performed with a
chromatographically purified sample. Alkaline saponification yielded a
solution containing the free carboxylic acids, which was then subjected
to negative-mode FAB-MS. The signal intensity of the free carboxylic
acids was much higher than those of the carboxylate anions generated by
fragmentation of the intact molecule and resulted in CID spectra that
were much more intense and more reliable to interpret.
Branch points or double bonds in carboxylic acid residues are usually
clearly indicated in the CID spectra. A saturated, methyl-branched carboxylic acid displays a dip of one signal in the evenly 14-amu (atomic mass unit)-spaced fragmentation pattern (18), while monounsaturated carboxylic acids show a gap of three signals due to
allylic cleavage (19, 36). The carboxylate anion at
m/z 295 exhibited a gap of four minor peaks surrounded by
two larger ones, at m/z 210 and 141, resulting from allylic
cleavage (Fig. 2). The observation of a
fourth minor signal implies the presence of a methyl branch somewhere
in the allylic unit. Whether this fragment, at m/z 195, results from vinylic cleavage at the double bond or from subsequent
elimination of a methylene residue from the fragment at m/z
210 remains unclear. However, the allylic fragments indicate that the
double bond is between carbons 10 and 11. A very similar fragmentation
pattern has been described by Couderc and colleagues for
11-methyl-12-octadecenoic acid detected in mycobacteria (7,
8). To determine the position of the methyl branch a
microhydrogenation (H2 over Pd-C) was performed with the
saponified sample. The negative-mode FAB CID spectrum of the saturated
product (m/z 297) clearly showed a single gap in the
fragmentation pattern between m/z 169 and 141, establishing that the methyl group is located at carbon 9.

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FIG. 2.
Negative-mode FAB CID spectrum of the C19:1 fatty acid
from the hydrolysate of APG. For a discussion of the observed daughter
ions, see text.
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Taking both results together, we conclude that the only possible
structure for the unknown fatty acid is 9-methyl-10-octadecenoic acid.
No differentiation between the cis and trans
isomers of the underivatized carboxylic acid could be made from the CID
spectra. However, the configuration was unambiguously established to be trans from the coupling constant data (J = 15.7 Hz) for
this moiety in the 1H NMR spectrum. Such a fatty acid has
not been reported so far in the literature.
To elucidate the structure of the polar lipid bearing the novel fatty
acid, detailed MS studies were performed. MS/MS studies of the major
deprotonated molecular ion at m/z 1,025 revealed three
different fatty acids, n-hexadecanoic acid, 9-octadecenoic acid, and 9-methyl-10-octadecenoic acid, as ions corresponding to the
neutral loss of free fatty acids (m/z 769, 743, and 729) and
the corresponding ketenes (m/z 787, 761, and 747) were
observed (Fig. 3). Furthermore, there
were a number of fragments in the upper mass region at intervals of
about 14 amu. These correspond to fragmentations along the fatty acid
acyl chains and represent charge remote fragmentation similar to that
observed in other phospholipids (20). Included here are
fragments due to allylic cleavages in the unsaturated acyl fatty acids
(m/z 927 and 871).

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FIG. 3.
Negative-mode FAB CID spectrum of the main APG at
m/z 1,025. The insert shows the major fragmentation pathways
of this phospholipid.
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Diagnostically important was the daughter ion at m/z 687, which was therefore analyzed by additional CID experiments. The CID
spectrum (Fig. 4) displayed the typical
pattern of a glycerophosphatic acid (GPA) (30). CID of the
(M-H)
ion from GPA yielded abundant carboxylate anions
from both the sn-1 position and the sn-2 position
(m/z 255 and 295), thus establishing that this fragment
contained n-hexadecanoic acid and 9-methyl-10-octadecenoic acid. In addition, there were neutral losses of the sn-2 and
sn-1 substituent as free carboxylic acid (m/z 431 and 391) as well as loss of each fatty acyl group as a substituted
ketene (m/z 449 and 409). The intensity differences of these
various ions indicated the positions of the different fatty acid
moieties, as losses are most abundant for the substituent positioned at sn-2 (30). Therefore, palmitic acid must be at
sn-2 and 9-methyl-10-octadecenoic acid must be at
sn-1. The ions at m/z 153 and 79 are due to the phosphate unit. These data indicated that the fragment at
m/z 687 is 1-(9-methyl-10-octadecenoyl)-2-hexadecanoyl-GPA.

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FIG. 4.
Negative-mode FAB CID spectrum of the phosphatidyl acid
at m/z 687 derived from the APG at m/z 1,025. The
insert shows the major fragmentation pathways. Note the different
intensities of the ions at m/z 449 and 391, which can be
used to assign the two fatty acids to the different positions at the
glycerol moiety.
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Subtracting the mass of this structural moiety from the molecular
weight of 1,026 gives a difference of 339 amu. Taking into account that
there must be an additional C18:1 fatty acid residue (281 amu), then
there is a final remainder of 58 amu. This is in agreement with a
double-esterified glycerol backbone, which carries one free hydroxyl
group (C3H6O). This was shown to be the case,
as acetylation caused an increase in the molecular weight to 1,068, corresponding to addition of one acetyl group. The other minor
components in the phospholipid fraction behaved in a similar way. The
phospholipid therefore seemed to be a phosphatidylglycerol which is
additionally esterified at one position in the second glycerol unit.
Under negative-mode FAB conditions, one would expect a fragment
consisting of the phosphate unit, the glycerol residue, and the C18:1
acyl fatty acid. This would have a mass of 435 amu and was detected.
The CID spectrum is shown in Fig. 5. The
observed daughter ions are in full accord with the postulated partial
structure as indicated in the fragmentation scheme.

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FIG. 5.
Negative-mode FAB CID spectrum of the phosphatidyl acid
at m/z 435 derived from the APG at m/z 1,025. The
insert shows the major fragmentation pathways.
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The nature and substitution patterns of the glycerol moieties were
verified from a comprehensive set of NMR data. Initially homonuclear 2D
COSY and TOCSY allowed unambiguous identification of two glycerol
systems (Table 1). From the signal
multiplicities, we could readily deduce which methylene groups were
attached to the phosphate group. The difference in 1H
shifts of the central methene groups of ca. 1.2 ppm was strong evidence
that the moiety possessing the high-field one has a glycerol unit with
carries a central free hydroxyl group. In addition the relative shifts
of the non-phosphate-bound methylenes indicated that these must be
acylated. The 13C shift differences between all the
carbons in the two moieties, assigned via the heteronuclear
correlations, are also compatible with these conclusions. Inspection of
further groups of signals in the COSY spectrum and their correlations
in the heteronuclear inverse 1H-detected one-bond
correlation (HMQC data) suggested that a number of fatty acid systems
were present, some of which contained signals characteristic of a
central cis double bond flanked by a number of methylene
groups and a further novel system incorporating a trans
double bond in a
-CH2-CH(CH3)-CH==CH-CH2- moiety.
The intensity of the olefinic signals in the 1H spectrum
suggested there were approximately one cis and one trans double-bond moiety per molecule. In conclusion, the
NMR data allowed the position of the free hydroxyl group to be
determined and unambiguously established the configuration and nature
of the olefinic systems present. The exact positions of the
different acyl groups in the molecule, however, could be deduced
only from the detailed MS data reported above. MS and NMR data led to
the identification of main component 4 as
1-(trans-9-methyl-10-octadecenoyl)-2-hexadecanoyl-glyceryl-phospho-1'-oleoyl-glycerol.
The remaining four minor phospholipids of this system (compounds 1 to 3 and 5) were investigated only by MS methods. The results are presented
in Table 2. Dispositions of the
substituents were determined by the masses of the GPA anions detected
in the CID spectra. The negative CID spectrum of the ion at
m/z 999 clearly indicated only palmitic acid and
9-methyl-10-octadecenoic acid and a GPA anion at m/z 687 (compound 1). The ion at m/z 1,011 consisted of two isobaric
phospholipids. One contained oleic acid (C18:1) and palmitic acid
(C16:0) (compound 2), and the other contained C18:1, pentadecanoic acid
(C15:0), and 9-methyl-10-octadecenoic acid (3). For compound
5, only two fatty acid moieties were present in both parts of the
molecule. The positions of the fatty acids in compounds 1 to 3 and 5 given in Table 2 were determined analogously to those in compound 4.
Three different cardiolipins were detected in the phospholipid fraction
of strain LMG 3820. Their structures were elucidated from the negative
CID spectra. The lightest of them, with a mass of 1,404 amu, displayed
only one phosphatidyl ion at m/z 673 and two acyl ions at
m/z 255 and 281 belonging to palmitate (C16:0) and oleate
(C18:1). Because the fragment [M-C16:0]
is more
intensive than [M-C18:1]
and
[673-C16:0]
is more intensive than
[673-C18:1]
, palmitic acid must be at sn-2
and oleic acid must be at sn-1 of the glycerol, resulting in
structure 9 of this cardiolipin. Analogous reasoning with respect to
the phosphatidyl ion at m/z 687 led to the structure of
cardiolipin 11. The third cardiolipin, with [M-H]
at
m/z 1,417, contains three acyl ions at m/z 255 (C16:0), 281 (C18:1), and 295 (C19:1). It is an asymmetric cardiolipin
since phosphatidyl ions at m/z 673 and 687 are observed in
the negative CID spectrum. The loss of palmitic acid from
[M-H]
is again more intensive than the loss of oleic
acid or 9-methyl-10-octadecenoic acid; thus, one oleate moiety of
compound 9 must be replaced by 9-methyl-10-octadecenoate, and the
structure is therefore that of compound 10. Although
cardiolipin 9 was never found as a natural product and is reported here
for the first time as such, it was synthesized more than 30 years ago
(9), while cardiolipins 10 and 11 have not been described
before.
In addition to APGs and cardiolipins, two other types of
phospholipids were found: phosphatidylglycerol, where two
different species were identified; and phosphatidylinositol,
where only one compound could be detected. This lipid,
1-(10-methyl-octadecanoyl)-2-palmitoyl-phosphatidylinositol, was
the only phospholipid where the characteristic 10-methyl-octadecanoic acid could be found.
Besides the very unusual C19:1 fatty acid, the unbranched even-numbered
fatty acids found in strain LMG 3820 are not known to exist in
Arthrobacter spp. in general. Also, the type of
phospholipids found in this strain is quite unusual for
Arthrobacter spp. Cardiolipins have been found in
Arthrobacter spp., but the cardiolipins from strain LMG 3820 are much heavier than those from Arthrobacter spp. due to
longer fatty acids attached to them. While the cardiolipins of
Arthrobacter atrocyaneus and A. globiformis
contain mainly C15:0 to C17:0 fatty acids, resulting in molecules of
1,300 to 1,350 amu (32), the cardiolipins of strain LMG 3820 have masses of 1,400 to 1,450 amu due to the presence of C16:0 to C19:1
in these phospholipids.
All of these differences from typical Arthrobacter strains
raise the question of the correct identification of strain LMG 3820. To
clarify the phylogenetic position of strain LMG 3820, we sequenced the
16S rDNA from this strain. Alignment of the sequence obtained revealed
no close relationship to any sequence of Arthrobacter spp.
but did show similarity to that of C. variabilis (5,
6) (Fig. 6). We sequenced the 16S
rDNAs of strains DSM 20132T and DSM 20536 and found that
sequences of 1,490 bp, that is, 95% of the presumed length of the
whole 16S rRNA gene, were identical for all three strains. However,
analysis of the phospholipids of these strains revealed clear
differences between them. The ratios of the phospholipids APG,
phosphatidylglycerol, phosphatidylinositol, and cardiolipin were
47:52:1:<1 for DSM 20132T, 63:32:5:<1 for DSM 20536, and
43:46:9:2 for LMG 3820. However, the differences in lipid species were
much larger. We calculated ratios of 1:1.9 for phosphatidylglycerols 6 and 7 and 1:2.8:0.5 for APGs 2/3, 4, and 5 for DSM 20132T;
the corresponding ratios were 1:0.1 and 1:0.2:0.1 for strain DSM 20536 and 1:2.9 and 1:4.4:1.6 for strain LMG 3820. These differences are
found not only in the phospholipids but also in the glycolipids, as can
be seen in the relative abundances of fatty acids in these lipids
(Table 3). To prove that these DSM
strains, although possessing different lipid compositions, belong to
the same species DNA-DNA hybridizations performed, and a DNA-binding
value of 90.5% was found.

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FIG. 6.
Phylogenetic tree based on a comparison of the 16S rDNA
sequences of strain LMG 3820, assigned to the species A. globiformis, and related organisms. The sequence data for all but
the two strains of C. variabilis were obtained from the
GenBank/EMBL and/or RDP databases. Scale bar represents one nucleotide
substitution per 100 bases.
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TABLE 3.
Fatty acid content of the glycolipid and phospholipid
fractions of Corynebacterium sp. strain LMG 3820, C. variabilis DSM 20132T, and C. variabilis DSM 20536
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DISCUSSION |
APGs have been reported to exist in Corynebacterium
bovis, Nocardioides albus, Micromonospora
coerulea, Actinomadura dassonvillei, and
Promicromonospora spp. (25), and that from
Corynebacterium amycolatum has only recently been further
characterized (40). Yagüe and coworkers could not
determine the position of the fatty acid at the polar head group, but
we have unambiguously determined it by using NMR techniques (Table 1).
The APGs from C. amycolatum displayed only oleic acid as the
fatty acid on the polar head, while we found oleic acid as the most
abundant fatty acid in this position but detected also some others
as minor species. We also found a reversed order of the fatty acids in
the diacylglycerol moiety of APG 2 (the only APG found in both C. amycolatum and LMG 3820) in strain LMG 3820 compared to that
described for C. amycolatum. The distribution of fatty
acids within the APGs of strain LMG 3820 shows some regularity. Only
9-octadecenoic acid and trans-9-methyl-10-octadecenoic acid
were found at sn-1 of the nonpolar glycerol moiety whereas
only saturated fatty acids are attached to sn-2, a
characteristic also found in the phosphatidylglycerols and cardiolipins
of this strain. The sn-1 position of the polar glycerol
showed a range of different fatty acids much broader than that reported
for C. amycolatum.
The results from the 16S rRNA sequences corroborated completely the
findings from the lipid analysis. Lipid analysis of C. variabilis DSM 20132T also revealed APG but in lower
amounts than in strain LMG 3820. C. variabilis DSM 20536, however, displayed a phospholipid composition different from that
observed in strain LMG 3820. As in C. amycolatum, the main
APG of C. variabilis DSM 20536 has a mass of 1,012 amu, in
contrast to the type strain and to strain LMG 3820, with the main APG
of 1,026 amu. All three strains possess the novel fatty acid
trans-9-methyl-11-octadecanoic acid. This fatty acid has different abundances in the glycolipids and phospholipids. Again, this
ratio is similar for LMG 3820 and the type strain but different from
that found in DSM 20536. We have here one of the rare cases where
different fatty acids and lipid compositions are found in strains with
identical 16S rDNA sequences.
As these phospholipids are among the major phospholipids detected in
this strain, however, an important function in the cell wall of
Corynebacterium sp. strain LMG 3820 can be assumed. We could
not deduce other functions of the APGs within the cell. 1,2-Diacyl-glyceryl-phospho-1'-acyl-glycerols 1 to 5 displayed no
antimicrobial, antifungal, or cytotoxic activities (1).
The fatty acid trans-9-methyl-10-octadecenoic acid is
reported here for the first time; hence its distribution within the genus Corynebacterium is unknown. Its routine detection is
hampered by the fact that the equivalent chain length number, usually
used for the automated identification of fatty acid methyl esters, is
the same as that for stearic acid (C18:0). Because of this difficulty,
one can speculate that trans-9-methyl-10-octadecenoic acid
has sometimes been misidentified as stearic acid. Such a misidentification can be avoided by the use of GC-MS.
APGs are widespread in the genus Corynebacterium
(40) and are furthermore among the major phospholipids in
C. amycolatum. This species, however, is not very closely
related to Corynebacterium sp. strain LMG 3820 (13), and so the amount of APG cannot be used as a biomarker
for these species as proposed by Yagüe and coworkers
(40). Further studies are required to determine the distribution of the different APGs and their substitution patterns of
fatty acids within the genus Corynebacterium.
The configuration of the double bond gives some clues to the
biosynthesis of this acid. It is probably formed from a
cis-9-octadecenoic acid precursor by methylation at C-9,
giving way to the rearrangement of the double bond to a
trans-configuration one at C-10 (14). The
branching of fatty acids leads to a decrease in their melting temperature, making cell membranes more flexible (33). The
acylation of phosphatidylglycerol to APG also results via reduced
hydrogen bond interactions to more flexible lipids. If such a
transition from unbranched to branched fatty acids is observed within a
species, the species should show a variety of morphological forms due
to the different transition temperatures of its cell membrane lipids. This is exactly what is found in C. variabilis, which is
known for its variable cell morphology and its Gram strain reaction variability, hence its name (28). The genome sequences of
the strains are very similar, as shown by DNA-DNA hybridization, which suggests either very recently acquired differences in lipid synthesis or a diversity in lipid compositions at the strain level due to different ecological niches requiring mainly flexibility in cell wall
adaptation. Because intraspecific lipid variations seem to be rare and
fatty acid compositions are usually very similar at the species level
(some identification systems rely on this fact), the interpretation
that strains of C. variabilis are adapted by the formation
of different lipids to their particular environment is more probable.
Obviously, the differences in the genotypes of C. variabilis
strains are only minor ones whereas the polar lipids, influencing the
phenotypes, vary over a rather broad range which favors survival of
each strain in a multitude of ecological niches.
 |
ACKNOWLEDGMENTS |
We thank P. Wolff for excellent technical assistance, C. Kakoschke and B. Jaschok-Kentner for recording NMR spectra, and F. Sasse for performing the bioassays.
This work was partly supported by funds from the German Federal
Ministry for Science, Education and Research (projects 0319433B and
0319433C) and the European Union within the T project "High Resolution Automated Identification and Application to
Biotechnologically Relevant Ecosystems."
 |
FOOTNOTES |
*
Corresponding author. Mailing address:
GBF
Gesellschaft für Biotechnologische Forschung mbH, Dept. of
Microbiology, Mascheroder Weg 1, D-38124 Braunschweig, Germany.
Phone: 49-531-6181-419. Fax: 49-531-6181-411. E-mail:
WAB{at}GBF.de.
 |
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Journal of Bacteriology, September 1998, p. 4650-4657, Vol. 180, No. 17
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