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J Bacteriol, January 1998, p. 243-249, Vol. 180, No. 2
0021-9193/98/$04.00+0
Copyright © 1998, American Society for Microbiology. All rights reserved.
aguA, the Gene Encoding an Extracellular
-Glucuronidase from Aspergillus tubingensis, Is
Specifically Induced on Xylose and Not on Glucuronic Acid
Ronald P.
de
Vries,1
Charlotte H.
Poulsen,2
Susan
Madrid,3 and
Jaap
Visser1,*
Molecular Genetics of Industrial Microorganisms, Wageningen
Agricultural University, NL-6703 HA Wageningen, The
Netherlands,1 and
Danisco Ingredients,
DK-8220 Brabrand,2 and
Danisco
Biotechnology, DK-1001 Copenhagen K,3
Denmark
Received 25 August 1997/Accepted 10 November 1997
 |
ABSTRACT |
An extracellular
-glucuronidase was purified and characterized
from a commercial Aspergillus preparation and from culture filtrate of Aspergillus tubingensis. The enzyme has a
molecular mass of 107 kDa as determined by sodium dodecyl
sulfate-polyacrylamide gel electrophoresis and 112 kDa as determined by
mass spectrometry, has a determined pI just below 5.2, and is stable at
pH 6.0 for prolonged times. The pH optimum for the enzyme is between
4.5 and 6.0, and the temperature optimum is 70°C. The
-glucuronidase is active mainly on small substituted xylo-oligomers
but is also able to release a small amount of
4-O-methylglucuronic acid from birchwood xylan. The enzyme
acts synergistically with endoxylanases and
-xylosidase in the
hydrolysis of xylan. The enzyme is N glycosylated and contains 14 putative N-glycosylation sites. The gene encoding this
-glucuronidase (aguA) was cloned from A. tubingensis. It consists of an open reading frame of 2,523 bp and
contains no introns. The gene codes for a protein of 841 amino acids,
containing a eukaryotic signal sequence of 20 amino acids. The mature
protein has a predicted molecular mass of 91,790 Da and a calculated pI of 5.13. Multiple copies of the gene were introduced in A. tubingensis, and expression was studied in a highly overproducing
transformant. The aguA gene was expressed on xylose,
xylobiose, and xylan, similarly to genes encoding endoxylanases,
suggesting a coordinate regulation of expression of xylanases and
-glucuronidase. Glucuronic acid did not induce the expression of
aguA and also did not modulate the expression on xylose.
Addition of glucose prevented expression of aguA on xylan
but only reduced the expression on xylose.
 |
INTRODUCTION |
Xylan is the most abundant
hemicellulose structure present in plant cell walls. It consists of a
-1,4-linked backbone of xylose residues which can be replaced with a
number of different functions such as acetyl, arabinosyl, ferulic acid,
and 4-O-methyl-
-glucuronic acid residues. To ensure cell
wall rigidity, xylan is linked to other cell wall polymers, such as
pectin and lignin. Two residues attached to xylan are involved in these
linkages. Ferulic acid, connected to the xylan backbone through
arabinose, can form a covalent linkage with other phenolic acid
residues present in pectin or lignin (7, 9, 17). The other
residue so far identified to be involved in cross-linking cell wall
polymers is 4-O-methylglucuronic acid. Indications for an
ester linkage between lignin and glucuronoxylan through
4-O-methylglucuronic acid have been found in beech wood
(22). Calculations indicated that approximately one-third of
the glucuronic acid residues attached to the xylan backbone are
involved in this linkage.
Many bacteria and fungi are capable of degrading polymeric structures
from plant cell walls by producing a large number of enzymes which
specifically cleave certain linkages in these polymers. Endoxylanases
(EC 3.2.1.8) cleave the xylan backbone, whereas
-xylosidase (EC
3.2.1.37) cleaves off xylose monomers from the nonreducing end of
xylo-oligomers. To remove the side groups from the xylose backbone,
arabinofuranosidases (EC 3.2.1.55), acetylxylan esterases (EC
3.1.1.72), ferulic acid esterases, and
-glucuronidases (EC
3.2.1.139) are needed. A complex synergy exists between these enzymes,
resulting in an efficient degradation of the xylan polymer.
-Glucuronidase releases 4-O-methyl-
-glucuronic acid
from xylan. Although many organisms have been reported to produce
extracellular
-glucuronidases (3, 8, 10, 16, 20, 21), for
Aspergillus only two intracellular
-glucuronidases have
been described (23). These intracellular
-glucuronidases have slightly different properties than extracellular
-glucuronidases from other fungi (3, 10, 20, 21), which
all have molecular masses between 90 and 130 kDa and a slightly acidic
pI and which are active mainly on small xylo-oligomers. So far, the
molecular structure of
-glucuronidase-encoding genes has been
described for only two organisms. An activity screening of
Trichoderma reesei cDNA clones resulted in the isolation of
a clone which contained the
-glucuronidase-encoding gene
(13). A gene encoding
-glucuronidase was also isolated
from the hyperthermophilic bacterium Thermotoga maritima
(18).
We have purified an extracellular
-glucuronidase from
Aspergillus tubingensis and, using reverse genetics, cloned
the corresponding gene.
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MATERIALS AND METHODS |
Strains, libraries, and plasmids.
The A. tubingensis strains used were NW756 and NW241 (pyrA2
fwnA1). Escherichia coli DH5
F' (BRL, Life
Technologies Inc., Gaithersburg, Md.) was used for routine plasmid
propagation. E. coli LE392 was used as a host for phage
.
pBluescript was used for subcloning. The genomic library from A. tubingensis was previously described (5).
Media and culture conditions.
Minimal medium (MM) contained
the following (per liter): 6.0 g of NaNO3, 1.5 g
of KH2PO4, 0.5 g of KCl, 0.5 g of
MgSO4, and trace elements (25) and 1% (wt/vol)
glucose as a carbon source unless otherwise indicated. For complete
medium (CM), MM was supplemented with 2% (wt/vol) tryptone, 1%
(wt/vol) yeast extract, 1% (wt/vol) Casamino Acids, and 0.5% (wt/vol)
yeast ribonucleic acids. Liquid cultures were inoculated with
106 spores/ml and incubated at 30°C in an orbital shaker
at 250 rpm. Agar at 1.5% (wt/vol) was added for solid medium. For the
growth of strains with auxotrophic mutations, the necessary supplements were added to the medium.
Chemicals.
D-Glucuronic acid was obtained from
Fluka (Buchs, Switzerland).
p-Nitrophenol-
-D-xylopyranoside,
D-xylose, D-glucose, L-arabinose 3,5-dimethoxy-4-hydroxycinnamic acid, and birchwood xylan were obtained
from Sigma (St. Louis, Mo.). Aldotriouronic acid,
xylo-oligosaccharides, and Xylazyme tablets were obtained from Megazyme
International (Dublin, Ireland). Endoproteinase Lys-C and bovine serum
albumin were from Boehringer (Mannheim, Germany).
N-Glycosidase F was from Oxford GlycoSystems (Oxon, United
Kingdom). Taq polymerase, Q-Sepharose FF, Phenyl Sepharose
FF, Superdex 200 PG, Butyl Sepharose FF, protein molecular weight
markers, and fast protein liquid chromatography Mono Q HR 5/5 and
Superose 6 HR 10/30 columns were purchased from Pharmacia (Uppsala,
Sweden). Poros 10 HQ medium was obtained from PerSeptive Biosystems
(Cambridge, Mass.). Sumizyme AC was obtained from Sumitomo (Osaka,
Japan). A PA 100 column was obtained from Dionex Corp. (Sunnyvale,
Calif.).
-Glucuronidase assay.
The incubation mixture for the
-glucuronidase assay (total volume, 0.2 ml) contained 0.16 ml of
substrate (2 mg of aldotriouronic acid-aldobiuronic acid [80:20] in
0.05 M sodium acetate buffer [pH 5.0]) and 0.04 ml of enzyme solution
to be assayed. The incubation was started by addition of the enzyme.
After 30 min of incubation at 40°C, the reaction was stopped by
boiling the samples for 4 min. Precipitates were removed by
centrifugation (10,000 × g), after which the
supernatant was transferred to a new tube. To each tube, 0.6 ml of
copper reagent prepared as described by Milner and Avigad
(14) was added, and then the sample was boiled for 10 min
and cooled on ice. Subsequently, 0.4 ml of arsenomolybdate reagent
prepared as described by Nelson (15) was added. The samples
were mixed gently, 0.8 ml of H2O was added, and the
absorbance at 600 nm was measured against H2O. Controls
were prepared by boiling a complete assay mixture at time zero, before
incubation at 40°C. A substrate control was made by adding water
instead of enzyme solution. A standard curve was prepared by using
D-glucuronic acid. One
-glucuronidase unit is the amount
of enzyme liberating 1 µmol of glucuronic or
4-O-methylglucuronic acid per min under standard assay
conditions.
-Xylosidase assay.
The
-xylosidase assay mixture
contained 600 µl of substrate (5.5 mg of
p-nitrophenyl-
-D-xylopyranoside in 6 ml of 50 mM sodium acetate [pH 4.2]) and 100 µl of purified
-xylosidase. The assay mixture was incubated at 40°C. At 0, 7, 15, and 22 min, a
100-µl sample was removed and added to 600 µl of stop reagent (0.13 M Na2CO3), after which the absorbance at 405 nm
was measured. A substrate blank was prepared by adding water instead of
enzyme solution. One
-xylosidase unit is the amount of enzyme which liberates 1 µmol of xylose per min at 40°C.
Endoxylanase assay.
Xylanase activity was determined by the
amount of blue color liberated from azurine-dyed cross-linked birchwood
xylan (Xylazyme tablets) under conditions recommended by the
manufacturer.
HPLC analysis of monomeric and oligomeric residues from
xylan.
A 2.5-ml solution of birchwood xylan (0.5%) in 50 mM
sodium acetate (pH 5.0) was incubated with 0.45 U of purified
-glucuronidase, 7.0 mU of purified xylanase A from A. tubingensis, 5.8 mU of xylanase complex (Sumizyme AC), and 0.48 U
of purified
-xylosidase. The four enzymes were incubated alone and
in all possible combinations in a total volume of 3.25 ml for 3 h
at 45°C. The incubation was stopped by boiling the samples for 3 min.
The samples were analyzed on a Dionex high-pressure liquid
chromatography (HPLC) system equipped with a Dionex PA 100 column and a
pulsed electrochemical detector with a pH reference electrode. Elution
was carried out with a 12-min linear gradient from 0.02 to 0.05 M
followed by a 33-min linear gradient from 0.05 to 0.12 mM sodium
acetate in 0.1 M NaOH at a flow rate of 1 ml/min.
Protein determination.
During the
-glucuronidase
purification, the protein concentrations were determined by measuring
the absorbance at 280 nm. Protein concentrations in the pooled samples
were determined in microtiter plates by a sensitive method
(2) performed according to instructions given by Bio-Rad
(1a). Bovine serum albumin was used as a standard.
PAGE and Western analysis.
Sodium dodecyl
sulfate-polyacrylamide gel electrophoresis (SDS-PAGE), native gel
electrophoresis, and isoelectric focusing were carried out by using the
Novex (San Diego, Calif.) system with precast gels. Both
electrophoresis and silver staining of the gels were done according to
the instructions of the manufacturer. Western analysis of supernatant
samples from A. tubingensis cultures was performed with
polyclonal antibodies raised in mice against purified
-glucuronidase
A (AGUA) from A. tubingensis.
Purification.
-Glucuronidase was isolated from a
commercial enzyme preparation, Pektinase 146 (Danisco Ingredients,
Brabrand, Denmark), derived from Aspergillus niger and from
culture filtrate of A. tubingensis
NW241::pIM3212.8. All procedures were performed at room
temperature.
(NH4)2SO4 was added to 200 ml of
Pektinase 146 or 20 ml of A. tubingensis culture filtrate to
45% saturation. After 30 min of stirring, the precipitated protein was
recovered by centrifugation for 20 min at 11,000 × g.
The pellet was solubilized in 120 ml of Phenyl Sepharose buffer
consisting of 20 mM sodium acetate (pH 5.0) and 1.5 M
(NH4)2SO4. The sample was applied
to a 155-ml Phenyl Sepharose FF column equilibrated in Phenyl Sepharose
buffer.
-Glucuronidase was eluted with a 1,320-ml linear gradient
from 1.5 to 0 M (NH4)2SO4 in 20 mM
sodium acetate (pH 5.0) with a flow rate of 4 ml/min during which 12-ml
fractions were collected. Fractions 60 to 101 (500 ml) were pooled,
concentrated, and desalted in Q-Sepharose buffer (20 mM
triethanolamine, pH 7.3) by ultrafiltration in an Amicon 8400 unit
equipped with a 10-kDa membrane. The resulting sample was applied to a
106-ml Q-Sepharose FF column equilibrated with Q-Sepharose buffer.
After the column was washed with 240 ml of Q-Sepharose buffer, the
-glucuronidase was eluted with a 420-ml linear gradient from 0 to
0.4 M sodium chloride in Q-Sepharose buffer at a flow rate of 3 ml/min,
during which 7.5-ml fractions were collected. Fractions 23 to 36 (105 ml) were pooled and concentrated by ultrafiltration. The concentrated
sample (7 ml) was loaded onto a Superdex 200 PG column (180 ml)
equilibrated in 20 mM sodium acetate (pH 5.0)-0.1 M sodium chloride.
-Glucuronidase was eluted from the column with a flow rate of 1 ml/min, during which fractions of 2 ml were collected. Fractions 22 to
41 were pooled (18 ml), concentrated, and desalted. This sample was
separated on a Mono Q HR 5/5 column in six runs with 20 mM
triethanolamine buffer (pH 7.3). The column was washed with an 18-ml
sodium chloride gradient from 0 to 0.1 M, and then
-glucuronidase
was eluted at a constant concentration of 0.1 M sodium chloride in the
same buffer at a flow rate of 1.5 ml/min, during which fractions of 0.75 ml were collected. The
-glucuronidase-containing fractions were
pooled (27 ml), and (NH4)2SO4 was
added to a final concentration of 1.5 M. This sample was loaded on a
30-ml Butyl Sepharose FF column equilibrated with Phenyl Sepharose
buffer. After the column was washed with 50 ml of this buffer, the
-glucuronidase was eluted with a 160-ml linear gradient from 1.5 to
0 M (NH4)2SO4 in Phenyl Sepharose
buffer at a flow rate of 2 ml/min, during which 4-ml fractions were
collected. Fractions 22 to 26 (20 ml) were pooled, concentrated, and
desalted as described above. A final purification was achieved by
loading the sample on a 4-ml Poros 10 HQ column equilibrated in
Q-Sepharose buffer; 5 ml was loaded per run. Elution was performed with
a 22-ml linear gradient of sodium chloride from 0 to 0.3 M in
Q-Sepharose buffer at a flow rate of 2 ml/min. Fractions of 1 ml were
collected and screened for
-glucuronidase activity.
Determination of N-terminal and internal peptide sequences of
AGUA.
The purified freeze-dried enzyme (100 µg) was dissolved in
50 µl of a solution containing 8 M urea and 0.4 M
NH4HCO3 (pH 8.4). After the solution was
flushed with N2, 5 µl of 45 mM dithiothreitol was added,
and the protein was denatured and reduced for 15 min at 50°C under
N2. After the solution had cooled to room temperature, 5 µl of 100 mM iodoacetamide was added for the cysteines to be derivatized for 15 min at room temperature in the dark under
N2. Subsequently, 135 µl of water and 5 µg of
endoproteinase Lys-C in 5 µl of water were added, and the sample was
incubated at 37°C under N2 for 24 h. The resulting
peptides were separated by reverse-phase HPLC on a VYDAC
C18 column (0.46 by 15 cm; particle size, 10 µm; The
Separation Group, Hesparia, Calif.) using solvent A (0.1% trifluoroacetic acid [TFA] in water) and solvent B (0.1% TFA in acetonitrile). Selected peptides were rechromatographed on a Develosil C18 column (0.46 by 10 cm; Novo Nordisk, Bagsværd,
Denmark) with the same solvent system, prior to N-terminal sequencing.
Sequencing was done on a 476A sequencer using pulsed-liquid fast cycles
according to the instructions of the manufacturer (Applied Biosystems,
Foster City, Calif.). For direct N-terminal sequencing, the purified protein was passed through a Brownlee C2 Aquapore column
(0.46 by 3 cm; particle size, 7 µm; Applied Biosystems) with the same solvent system as above. N-terminal sequencing was performed as described above.
Deglycosylation.
Deglycosylation of the pure
-glucuronidase was performed with N-glycosidase F (Oxford
GlycoSystems) according to the procedure recommended by the
manufacturer, with denaturation of the protein before addition of the
N-glycosidase F.
Characterization of the
-glucuronidase.
The molecular
masses of the native and the recombinant
-glucuronidases were
determined by gel permeation chromatography on a Superose 6 column at a
flow rate of 0.5 ml/min with 20 mM triethanolamine (pH 7.3) as the
eluent and RNase A (13.7 kDa), ovalbumin (43 kDa), aldolase (158 kDa),
and catalase (232 kDa) as size standards.
The optimum temperature was determined by the assay described above,
with incubation for 10 min in 0.05 M sodium acetate buffer (pH 5.0) at
different temperatures. The optimum pH was determined by using 0.1 M
sodium acetate in a pH range from 3.5 to 6.7; pH values were determined
for the assay tubes at room temperature. Temperature stability was
determined by incubating 200 µl of purified
-glucuronidase in 50 mM sodium acetate buffer (pH 5.0) at different temperatures for 20 h, after which the
-glucuronidase activity was determined as
described above. pH stability was determined by incubating 150 µl of
purified
-glucuronidase in 500 µl of 0.2 M sodium acetate (pH
4.0)-0.2 M bis-Tris (pH 6.0) or 0.2 M Tris (pH 8.0) for 3, 10, 13, 28, and 62 days at room temperature. Residual activities were measured as
described above.
Determination of the molecular mass by mass spectrometry.
Samples containing 10 µl of native and recombinant
-glucuronidase
were mixed with 1 µl of 10% acetonitrile and desalted for 2 h
at room temperature by use of VSWP013 filters (Millipore). MALDI/TOF
mass spectrometry was performed with a Voyager Biospectrometry Work
Station (PerSeptive Biosystems). Samples were prepared by mixing 1 µl
of desalted proteins and 2 µl of matrix solution (saturated solution
of 3,5-dimethoxy-4-hydroxycinnamic acid in 60% acetonitrile with 0.1%
TFA). A 1-µl sample of the mixture was spotted into a well of the
MALDI sample plate and allowed to air dry prior to introduction into
the mass spectrometer. Data for 100 3-ns laser pulses were averaged for
each spectrum, and linear, positive-ion TOF detection was performed
with an accelerating voltage of 20,000 V. Spectra were smoothed with a
19-point Savitzky-Golay filter.
PCR cloning of a specific fragment of the aguA
gene.
Several degenerate oligonucleotides were designed and
synthesized on an Applied Biosystems 392 DNA synthesizer. PCRs were performed with a Biometra Personal Cycler using these oligonucleotides at 55°C and chromosomal DNA from A. tubingensis NW756. A
PCR using oligonucleotides 5 and 9 (5'-GGNCCNATHGAYTTYCARGT-3'
and 5'-ARRTCRTARTTNACNCC-3' with H, Y, and R
representing A/C/T, C/T, and A/G, respectively) resulted in a fragment
of 1,142 bp which was cloned into the pGEM-T vector system (Promega).
Sequence analysis was performed as described below.
Isolation, cloning, and characterization of the aguA
gene.
Plaque hybridization using nylon replicas was performed as
described by Benton and Davies (1). Hybridizations were
performed overnight at 65°C with the PCR fragment used as a probe.
The filters were washed with SSC and SDS (final concentrations, 0.2×
and 0.5%) (1× SSC is 0.15 M NaCl plus 0.015 M sodium citrate [pH
7.6]). Positive plaques, identified on duplicate replicas after
autoradiography, were recovered from the original plates and purified
by rescreening at a low plaque density. Standard methods were used for
other DNA manipulations, such as Southern and Northern analysis,
subcloning, DNA digestions, and
phage and plasmid DNA isolations
(19). Chromosomal DNA was isolated as previously described
(4). Sequence analysis was performed on both strands of DNA
with a Sequenase DNA sequencing kit (United States Biochemical
Corporation, Cleveland, Ohio) and a T7Sequencing Kit
(Pharmacia LKB), using additional oligonucleotides. Nucleotide and
amino acid sequences were analyzed with the computer programs of
Devereux et al. (6). Aspergillus transformations were performed as described by Kusters-van Someren et al.
(12).
Nucleotide sequence accession number.
The EMBL accession
number for aguA from A. tubingensis is Y15405.
 |
RESULTS |
Purification of
-glucuronidase.
-Glucuronidase was
purified as described in Materials and Methods. A summary of the
purification from the Pektinase 146 preparation is shown in Table
1. Throughout the purification,
-glucuronidase always eluted as a single peak. The enzyme was
purified 371-fold, with a yield of 5.8%. SDS-PAGE patterns showing the
different steps of the purification are given in Fig.
1. The purified
-glucuronidase had no
-xylosidase activity or endoxylanase activity.

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FIG. 1.
SDS-PAGE of the different steps in the purification of
-glucuronidase. Lane 1, low-molecular-mass standard proteins; lane
2, starting material; lane 3, 45% ammonium sulfate precipitate; lane
4, Phenyl Sepharose FF pool; lane 5, Q-Sepharose pool; lane 6, Superdex
200 PG pool; lane 7, Mono Q pool; lane 8, Butyl Sepharose pool; lane 9, Poros 10 HQ pool.
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|
Enzyme properties.
The apparent molecular mass of
-glucuronidase was 107,000 Da as determined by SDS-PAGE (Fig. 1) and
100,000 Da as determined by gel filtration, indicating that the native
enzyme consists of a single peptide chain. For the recombinant enzyme,
an apparent molecular mass of 115 kDa was determined by SDS-PAGE. After
N deglycosylation, a molecular mass of 95,000 Da was observed for both
the native and the recombinant enzyme by SDS-PAGE. The molecular mass
was also determined by mass spectrometry, resulting in values of
112,079 Da for the native enzyme and 116,488 for the recombinant enzyme.
The isoelectric point for the
-glucuronidase was just below 5.2. The
pH and temperature optima were 4.5 to 6 and 70°C, respectively. At pH
6.0, the
-glucuronidase was completely stable for at least 62 days
at room temperature. A loss of 15% of the activity was observed after
13 days, at pH 4, but even after 62 days, 68% of the activity was
recovered. pH 8 was the least favorable of the tested pH values. After
13 days, 82% of the activity was recovered; after 62 days, this value
had dropped to 45%. At pH 5, the
-glucuronidase was 100% stable at
10°C for 20 h. At the same pH at 45, 50, 55, and 60°C, the
recoveries after 20 h were 88, 70, 52, and 10%, respectively.
Loss in activity during freezing was not observed. With aldotriouronic
acid-aldobiuronic acid as a substrate, the Km
for
-glucuronidase was determined to be 0.14 ± 0.03 mg/ml (mean ± standard deviation). For the recombinant enzyme, similar results were obtained.
Cloning and overexpression of aguA from A. tubingensis.
Amino acid sequences were obtained for AGUA as
described in Materials and Methods. In total, seven fragments
containing 201 amino acids were sequenced (with six uncertainties). On
the basis of these amino acid sequences, nine degenerate
oligonucleotides were designed and used in PCRs with A. tubingensis chromosomal DNA. Although several DNA fragments were
generated, only one combination (primers 5 and 9, based on peptides 5 and 4, respectively; see Materials and Methods) resulted in a fragment
in which both the amino acid sequences on which the primers were based
could be identified. The size of this fragment is 1,142 bp.
A genomic library of A. tubingensis was screened by using
this fragment as a probe, and four hybridizing phage
clones were isolated and purified. From one of these phages, a 7-kb
XhoI/BamHI fragment and a 4-kb KpnI
fragment containing part of the aguA gene and some flanking
regions were cloned (pIM3210 and pIM3211). These fragments were
combined, resulting in plasmid pIM3212 (Fig. 2), which was used to generate A. tubingensis multicopy transformants. Transformation of this
construct resulted in a number of transformants with elevated levels of
AGUA as determined by Western analysis (data not shown). Transformant
NW241::pIM3212.8 had the highest level of
-glucuronidase
activity (10 times the wild-type activity) and was selected for further
experiments. Slot blot analysis indicated the presence of 11 copies of
the aguA gene in this transformant.

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FIG. 2.
Restriction map of the insert containing the
aguA gene (arrow) which is present in the functional
construct pIM3212.
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|
Analysis of the nucleotide sequence of aguA and the
derived amino acid sequence of the enzyme.
Subclones were made
from pIM3210 and pIM3211 and sequenced. Additional sequence data were
obtained by using specific oligonucleotides. The aguA gene
consists of an open reading frame of 2,523 bp which contains no introns
and codes for a protein of 841 amino acids (Fig.
3). Analysis of the derived amino acid
sequence indicated a putative eukaryotic signal sequence of 20 amino
acids, which was confirmed by the N-terminal amino acid sequence of the
mature protein starting at position 21. The mature protein contains 14 putative N-glycosylation sites, of which 4 were confirmed by the presence of an unidentifiable amino acid residue in the sequenced peptides. The enzyme has a calculated pI of 5.18, which is identical to
the measured value. The calculated molecular mass of the mature protein
is 93,904 Da, which is similar to the value determined by mass
spectrometry. In the promoter region of the gene, several boxes
possibly involved in transcription and regulation were identified. A
TATA box was found 65 bp upstream from the ATG, and CAAT boxes were
found at positions
106,
161, and
313. Putative binding sites for
the CREA protein (11), involved in carbon catabolite repression, were found at positions
100,
123,
247, and
440. Only the first site is present in the upper strand; the others are in
the complementary strand.

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FIG. 3.
Nucleotide sequence of aguA and derived amino
acid sequence. The signal peptide (lowercase letters), putative
(boldface roman letters) and confirmed (boldface italics)
N-glycosylation sites, and the determined amino acid sequences
(underlined) are indicated.
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|
Alignment of the amino acid sequences of AGUA and two other
-glucuronidases.
The deduced amino acid sequence of AGUA from
A. tubingensis was aligned with the deduced amino acid
sequences of AGUA from T. maritima (18) and GLRI
from T. reesei (13) as shown in Fig.
4. AGUA was 59.3% identical to GLRI from
T. reesei and 39.3% identical to AGUA from T. maritima. No clear highly identical boxes could be identified,
although the level of identity is highest in the middle region of the
enzymes.

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FIG. 4.
Alignment of the amino acid sequences of
-glucuronidase from A. tubingensis, T. reesei,
and T. maritima. Identical amino acids are depicted below
the amino acid sequences.
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|
The aguA gene is induced by xylan and xylose but not by
glucuronic acid.
The induction of aguA was studied by a
transfer experiment. Transformant NW241::pIM3212.8 was grown
for 16 h in CM (3% fructose). The mycelium was harvested, washed
with MM, and transferred to MM with different carbon sources. After
6 h, the mycelium was harvested and stored at
70°C. A Northern
analysis was performed using RNA isolated from the mycelium samples.
Induction of aguA was observed on xylose, arabinose,
xylobiose, and birchwood xylan alone but not on glucose, fructose,
glycerol, or glucuronic acid (Fig. 5).
The presence of glucose completely inhibited the expression on
birchwood xylan but only reduced the expression on xylose. Addition of
glucuronic acid to the monomeric carbon sources did not result in an
increase in the expression of aguA.

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FIG. 5.
Northern analysis of the induction of aguA on
different carbon sources. The top panel was probed with the internal
2-kb SalI fragment of aguA, and the bottom panel
was probed with a 700-bp EcoRI fragment from the A. niger 18S ribosomal DNA and served as a loading control. Lane 1, mycelium from the preculture on fructose; other lanes, mycelium
transferred to the following carbon sources: lane 2, 1% glucose; lane
3, 1% fructose; lane 4, 1% xylose; lane 5, 1% arabinose; lane 6, 1%
glycerol; lane 7, 1% glucuronic acid; lane 8, 0.2% xylobiose; lane 9, 0.5% birchwood xylan; lane 10, 1% xylose-0.2% glucose; lane 11, 1%
xylose-1% glucose; lane 12, 1% xylose-2% glucose; lane 13, 0.5%
birchwood xylan-1% glucose; lane 14, 1% glucose-1% glucuronic
acid; lane 15, 1% fructose-1% glucuronic acid; lane 16, 1%
xylose-1% glucuronic acid; lane 17, 1% arabinose-1% glucuronic
acid; and lane 18, 1% glycerol-1% glucuronic acid.
|
|
The presence of endoxylanase or
-xylosidase enhances the
activity of
-glucuronidase on xylan.
The purified native
-glucuronidase was able to liberate minor amounts of
4-O-methylglucuronic acid from birchwood xylan and wheat
bran (data not shown) but had a much higher activity on xylan-derived
oligomers. The influence of endoxylanase and
-xylosidase on
-glucuronidase activity was studied by incubating combinations of
these enzymes with birchwood xylan as described in Materials and
Methods. Addition of xylanase A, xylanase complex, and
-xylosidase increased the amount of 4-O-methylglucuronic acid liberated
(Table 2). The amount of small oligomers
(xylobiose and xylotriose) is larger when a combination of
-glucuronidase and endoxylanase is used than when endoxylanase is
used alone, indicating a positive effect of
-glucuronidase on the
activity of endoxylanase on xylan. The most efficient degradation of
birchwood xylan was achieved when a combination of
-glucuronidase,
endoxylanase, and
-xylosidase was used.
View this table:
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|
TABLE 2.
Synergistic effects of -glucuronidase, endoxylanase,
and -xylosidase activity on release of
4-O-methylglucuronic acid, xylose, and xylo-oligomers from
birchwood xylan
|
|
 |
DISCUSSION |
Purification of the
-glucuronidase required a complex
procedure. The ammonium sulfate precipitation applied as the first step
did not give much purification with respect to the increase in specific
activity but was important because it removed much of the colored
contaminants (possibly phenolic compounds), which would otherwise have
interfered with later column chromatography steps. Gel filtration
always gave a large loss in activity but could not be omitted in the
procedure. The most essential step was the Poros 10 HQ column, which
had a high selectivity for the
-glucuronidase. However, the
separation capacity of Poros 10 HQ was poor compared to that of Mono Q,
and it was not possible to eliminate the Mono Q column.
The molecular mass determined by SDS-PAGE after treatment with
N-glycosidase F was still slightly higher than the
calculated molecular mass from the amino acid sequence, due to either O
glycosylation or running effects in the SDS-PAGE gel. Since the
difference in molecular mass is small, the amount of O glycosylation,
if any, will be small. The large difference in molecular masses
observed between the mature and the deglycosylated enzyme (107 and 95 kDa, respectively, for the native enzyme) suggests that most of the 14 putative N-glycosylation sites are actually involved in glycosylation. The difference in molecular masses for the native and the recombinant enzyme is probably due to differences in the degree of glycosylation.
The molecular mass is similar to those of some other fungal
-glucuronidases (8, 21) but is lower than those of
Agaricus bisporus
-glucuronidase (16), which
has a molecular mass of 160,000 Da as determined by SDS-PAGE, and the
two internal
-glucuronidases from A. niger
(23), which have molecular masses of 130 and 150 kDa,
respectively. The pI of AGUA is similar to the pI of the A. niger
-glucuronidases.
The amino acid sequence of AGUA had a high level of identity to the
amino acid sequences of the
-glucuronidases from T. reesei and T. maritima (13, 18), as shown in
Fig. 4. The homology was present throughout the sequence until the end
of the T. maritima amino acid sequence. The additional amino
acid sequence from the two fungal
-glucuronidases (starting at the
end of the T. maritima sequence) also showed a high level of
identity, indicating that this region might be specific for fungal
-glucuronidases. Screening of the databases did not detect any other
enzymes which had a significant level of identity with the
-glucuronidase from A. tubingensis.
The aguA gene was induced on xylose, xylobiose, and xylan,
which resembles the induction of xlnA, encoding an A. tubingensis endoxylanase (5), and xlnD from
A. niger, encoding a
-xylosidase (24). These
data suggest that aguA is regulated by a xylan- or
xylose-specific system, which induces genes coding for xylan-degrading enzymes in the presence of xylose or xylan. The low level of expression on arabinose has also been observed for other xylanolytic genes (unpublished data). Since a minor amount of xylose is present in the
arabinose purchased from Sigma, this could explain the low level of
expression, rather than a possible inducing effect of
L-arabinose itself. Glucose repressed the expression of
aguA completely in the presence of xylan but only partly in
the presence of xylose. The presence of four putative CREA binding
sites in the region directly upstream from the structural part of
aguA suggests that glucose repression occurs through this
regulator protein. The reason for the leaky repression in the presence
of xylose is not clear and requires further study.
The hydrolysis of birchwood xylan by xylanases was enhanced in the
presence of
-glucuronidase, but complete hydrolysis to xylose was
not observed. Although the enzymes tested in this study clearly have a
synergistic effect, other enzymes are needed as well to completely
degrade xylan. A synergistic effect of the addition of (endo)xylanase
to an
-glucuronidase incubation mixture was found. The activity of
-glucuronidases on polymeric substrates is very low compared to the
activity on small-oligomer substrates, indicating that the presence of
a xylanase is essential for efficient
-glucuronidase activity in
vivo. Siika-aho et al. (21) found that
-glucuronidase
seemed to act exclusively on bonds between the terminal xylose at the
nonreducing end and 4-O-methylglucuronic acid attached to
it. From this data, a synergistic effect of addition of
-xylosidase
to an incubation mixture with
-glucuronidase (and xylanase) was
expected, which was confirmed by the experiments described in this
paper. Although the xylanase complex already contains
-xylosidase,
addition of this enzyme resulted in an increase in the amount of
liberated 4-O-methylglucuronic acid and a further
degradation of xylobiose and xylotriose to xylose.
In this investigation, we have studied the hydrolysis of only hardwood
xylan. A comparison with softwood xylan or deacetylated xylan could
elucidate whether the acetylation present in hardwood is of any
influence on the hydrolysis by
-glucuronidase. Hardwood xylan is a
linear xylan, while wheat bran xylan is highly branched. The influence
of branching requires further investigation in relation to the activity
of
-glucuronidase on wheat bran xylan and applications thereof.
 |
ACKNOWLEDGMENTS |
We thank Masoud R. Zargahi for excellent technical assistance
during purification and characterization of the enzyme, Clive Phipps
Walter for performance of the amino acid sequencing, and Yvonne
Thomassen and Tine Suhr for assistance during cloning and characterization of the gene.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Molecular
Genetics of Industrial Microorganisms, Wageningen Agricultural
University, Dreijenlaan 2, NL-6703 HA Wageningen, The Netherlands.
Phone: 31 (0) 317 482865. Fax: 31 (0) 317 484011. E-mail:
office{at}algemeen.mgim.wau.nl.
 |
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0021-9193/98/$04.00+0
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