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Journal of Bacteriology, November 1998, p. 5601-5611, Vol. 180, No. 21
0021-9193/98/$04.00+0
Copyright © 1998, American Society for Microbiology. All rights reserved.
Gigantism in a Bacterium, Epulopiscium
fishelsoni, Correlates with Complex Patterns in Arrangement,
Quantity, and Segregation of DNA
V.
Bresler,1
W. L.
Montgomery,2,*
L.
Fishelson,3 and
P. E.
Pollak2
Institute for Nature Conservation
Research1 and
Department of
Zoology,3 G. Wise Faculty of Life Sciences,
Tel Aviv University, Ramat Aviv, 69978 Tel Aviv, Israel, and
Department of Biological Sciences, Northern Arizona
University, Flagstaff, Arizona 86011-56402
Received 25 February 1998/Accepted 1 September 1998
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ABSTRACT |
Epulopiscium fishelsoni, gut symbiont of the brown
surgeonfish (Acanthurus nigrofuscus) in the Red Sea,
attains a larger size than any other eubacterium, varies 10- to 20-fold
in length (and >2,000-fold in volume), and undergoes a complex daily
life cycle. In early morning, nucleoids contain highly condensed DNA in
elongate, chromosome-like structures which are physically separated
from the general cytoplasm. Cell division involves production of two (rarely three) nucleoids within a cell, deposition of cell walls around
expanded nucleoids, and emergence of daughter cells from the parent
cell. Fluorescence measurements of DNA, RNA, and other cell components
indicate the following. DNA quantity is proportional to cell volume
over cell lengths of ~30 µm to >500 µm. For cells of a given
size, nucleoids of cells with two nucleoids (binucleoid) contain
approximately equal amounts of DNA. And each nucleoid of a binucleoid
cell contains one-half the DNA of the single nucleoid in a uninucleoid
cell of the same size. The life cycle involves approximately equal
subdivision of DNA among daughter cells, formation of apical caps of
condensed DNA from previously decondensed and diffusely distributed
DNA, and "pinching" of DNA near the middle of the cell in the
absence of new wall formation. Mechanisms underlying these patterns
remain unclear, but formation of daughter nucleoids and cells occurs
both during diurnal periods of host feeding and bacterial cell growth
and during nocturnal periods of host inactivity when mean bacterial
cell size declines.
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INTRODUCTION |
In 1985, an unusual unicellular
organism was reported from the gut of brown surgeonfish,
Acanthurus nigrofuscus (Acanthuridae: Teleostei), in the Red
Sea (14). These organisms were named Epulopiscium
fishelsoni and tentatively placed in the kingdom Protoctista by Montgomery and Pollak (23) on the
basis of their maximum size (>600 µm), great variation in length
(~30 to >600 µm) and volume (>2,000-fold) both within single
hosts and during a daily cycle, daily variability in nucleoid and
cytoplasm structure, and a peculiar mode of reproduction (daughter
cells form within parental organisms and eventually emerge as mobile
cells from the maternal envelope). Similar and apparently related
organisms representing at least 10 different morphotypes were later
collected from surgeonfishes from the Hawaiian Islands, French
Polynesia, Tuvalu, Guam, southern Japan, Papua New Guinea, the Great
Barrier Reef, and South Africa (8, 13a, 15a, 22, 24a). None
of these organisms (here termed "epulos" to distinguish them from other groups of bacteria) has been cultured, so all descriptions of
distribution or functions within hosts and descriptions of diel changes
in size or stages in the life cycle are based on samples from
populations of epulos collected from hosts sacrificed at different
times of day and night.
Initial electron microscopy of epulos revealed a complex ultrastructure
lacking standard eukaryotic organelles (8, 14, 23).
Following suggestions by Clements and Bullivant (9) that the
fine structure of cytoplasm, cell wall, and flagella indicated that
epulos were in fact prokaryotic, Angert et al. (2) isolated
and sequenced the gene encoding the 16S rRNA subunit, placing these
giant microorganisms in a group of low-G+C gram-positive bacteria
related to Clostridium. In situ hybridization with
fluorescein-labelled oligonucleotide probes based on cloned rRNA
sequences confirmed the source of the rRNA gene. E. fishelsoni represents, therefore, the largest bacterium so far
described (2, 9).
Cell size also varies more than in other bacteria. If one estimates the
volume of a cigar-shaped E. fishelsoni cell as roughly the
volume of two cones, each with height and radius of the base equal to
half of cell length and half of its maximal diameter, respectively
(V = 2/3
r2h), the volume of a
very large E. fishelsoni (~354,000 µm3 [500
by 52 µm]) is approximately 3,000-fold greater than that of a very
small E. fishelsoni (~125.6 µm3 [30 by 4 µm]). The volume of a large epulo can, therefore, exceed the volume
of a bacterium such as Escherichia coli (~2
µm3 [1 by 2 µm]) (25) by at least 5 orders
of magnitude.
Cellular or molecular mechanisms that may support and control such
exceptional variability in dimension, volume and surface/volume ratios
of E. fishelsoni are unclear. However, cells are highly mobile, vary in mean size and structure during a 24-h period, affect
the pH of the host's gut fluids differentially during day and night
(suggesting metabolic changes on a diel cycle), and construct mobile
daughter cells within the parental cell (9, 14, 23, 24). The
active metabolism and corresponding expectation of genomic activity
supporting synthesis of macromolecules led us to predict correlations
between DNA quantity or condensation state and cell size or stage in
the daily life cycle.
Because E. fishelsoni and related organisms have not been
cultured, we relied on collections of cells from host fishes sacrificed at different times of day and night, fluorescence cytochemistry, microfluorometry, and transmission electron microscopy to describe changes in the functional state and distribution of DNA and other cell
constituents during the microbe's life cycle. Our primary objective
was to study relationships between DNA quantity and cell volume, as
well as possible changes in DNA distribution and functional activity of
the nucleoid during the life cycle of E. fishelsoni. In this
paper, we initially demonstrate that DNA quantity is directly
proportional to cell volume rather than to length or surface area, and
that large quantities of DNA are almost equally divided and distributed
to developing daughter cells. We then describe how coordinated changes
in DNA condensation state and distribution, nucleoid expansion, and
cell wall deposition lead to the formation of daughter cells.
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MATERIALS AND METHODS |
Specimens of the host surgeonfish, A. nigrofuscus,
were collected by net or hand spear near the Interuniversity Institute, Steinitz Marine Biological Laboratory, Eilat, Red Sea, Israel (see
reference 21 for details of the site and the
collection techniques). Because surgeonfish are active only during the
day, host fish intended for sampling at night were held in flowing seawater prior to sacrifice; samples obtained during the day were taken
shortly after fish were collected. Epulos have not been cultured, so
each fish provided a single sample of an epulo population at the time
of sacrifice.
Specimens were sacrificed by a blow to the head and immediately
dissected. E. fishelsoni cells were collected from the
central intestine of the fish within ~15 min of host sacrifice. Cells were either examined live at the marine laboratory or were fixed (in
absolute methanol for fluorometry and in other fixatives, described
below, for light and electron microscopy) at various times of day and
night for subsequent analysis at our home institutions.
Lengths of epulos varied within a single host fish, and epulo size
distribution changed with time of day or night. In the field, we used
an ocular grid in a Zeiss binocular microscope at ×100 to assign live
cells collected at different times to ~50-µm-interval length
categories (<50 µm, 50 to 101 µm, and so on [see Table 1]).
Sixty haphazardly chosen cells from each of two fish were measured per
time period (total n = 120 per period). Because we were
unable to measure rapidly moving cells precisely with the grid
available to us at our field laboratory, we created a frequency distribution among categories and calculated an approximate mean length
for each time period, assuming that all cells in a particular category
were the median length for that category (see Table 1).
Preserved cells intended for fluorometry (see below) were returned to
Tel Aviv University. There, cells falling into several narrow size
ranges (5 to 10 µm for cells <250 µm long, 20 to 30 µm for cells
>300 µm long [see Table 2]) were selected from samples. Samples
representing different collection times were treated independently. Initially, six size categories (groups I through VI of Table 2) were
established, such that cells in each of groups II through VI had
volumes approximately twice those of cells in the preceding smaller
group (see Table 2). A seventh group (group 0) was later added to
expand the size of range of surveyed cells and included specimens of
the smallest easily assayed E. fishelsoni (~30 µm long).
Cells with lengths between ~30 and ~150 µm were excluded due to
limitations in equipment available to make precise measurements.
Because epulos collected at different times of day and night show
marked variability in the distribution and condensation state of DNA
and in the size and location of nucleoids, initial measurements of
total DNA in nucleoids were made on cells from a sample taken at
approximately 0800 h. Nucleoids in this material were compact,
round in shape, and located at the poles of the cell. We studied 60 cells from each group. Surveys of a variety of cells sampled at
different times of day or night were then made in order to describe
correlations in state or distribution of DNA and other cell components
with time or stage in the epulo life cycle. We used fluorescence
cytochemistry, microfluorometry, and digital analysis of fluorescently
stained cells, the most sensitive methods to measure amount and state
of DNA and RNA in single prokaryotic and eukaryotic cells (3, 4,
10-13, 32, 33).
Fluorescence cytochemistry had never been applied to E. fishelsoni, so we used two classical fluorescence methods to
estimate relative amounts of DNA in cells: the Fuelgen reaction with
acridine yellow-Schiff-type reagent (Sigma), and berberine sulfate
(Sigma) staining after ribonuclease treatment (3, 4, 10).
Schiff reagent reacts with aldehyde groups of free deoxyribose
nucleotides liberated by acid hydrolysis. Because the intensity of the
Fuelgen reaction depends on temperature and time of hydrolysis, we
standardized our preparation by hydrolyzing with 6 N HCl for 10 min at
room temperature before treating with Schiff reagent for 30 min. After washing (in 1 N HCl-10% NaHSO3-distilled water [1/1/18
by volume] followed by distilled water), stained bacteria were mounted
in nonfluorescent glycerine for measurements. In the second technique, we stained with a 0.01% solution of berberine sulfate in ethanol for
20 min after pretreatment with ribonuclease; berberine sulfate is an
intercalating agent used without the hydrolysis required by the Fuelgen
technique. A conventional fluorescence objective (10 by 0.40) and
measuring diaphragms corresponding to the structure being measured
(whole cell or nucleoid only) were used for measuring relative amounts
of DNA (Fuelgen and berberine procedures); units were arbitrary
(microamperes of current). Results from these two techniques (see Table
2) validate their application in this system.
We used both morphological and cytochemical criteria following staining
with acridine orange to map the locations of different cell components
during different stages in the cell and life cycles. Acridine orange
has been applied widely as a bacterial stain to detect and characterize
soil or sediment bacteria (15, 16, 27, 31), and the
metachromic red or green fluorescence of acridine orange has been used
to assess viability and physiological activity of both bacteria and
bacterial spores (7, 18-20, 28).
Cells stained with acridine orange were mapped according to the classes
of molecules distinguished (those with condensed DNA or decondensed
DNA, RNA enriched, general cytoplasm, cell wall [see Fig. 3 through
6]). The morphology of E. fishelsoni is well known from
both light and electron microscope studies (9, 14, 23) (see
Fig. 1 and 2), and we scanned cells stained with acridine orange under
permanent visual control. We could, therefore, distinguish fluorescent
signals from wall, cytoplasm, and nucleoid under the light microscope.
The fluorescent signals we used for this purpose are the ratios of red
and green fluorescence (red fluorescence/green fluorescence × 1,000 [R/G ratio]) of acridine orange excited at 380 to 420 nm. In
all treatments and stages in the life cycle (see Table 4), ratios for
wall materials remained stable at 150 to 154 and thus served as a check
on the comparability of the technique among treatments. Variation among
samples in ratios measured for cytoplasm and nucleoids was due
primarily to either RNA enrichment or the condensation state of DNA.
Acridine orange fluoresces green (maximum at 530 nm with excitation at
380 to 420 nm) when intercalated near A-T (or A-U) base pairs of
double-stranded nucleic acids (e.g., DNA and duplex sections of tRNAs)
but fluoresces red (maximum at 620 nm) when associated with
single-stranded nucleid acids. (Red and green autofluorescence of
fixed, unstained cells was <5% of values for stained cells and is
ignored here; red fluorescence of epulos [reported in reference
14] occurred when live cells were excited at 510 to
560 nm). Thus, nucleoids with highly condensed DNA will generate lower
R/G ratios than nucleoids with decondensed DNA, those with relatively
high frequency of single-stranded DNA segments, or those enriched with
RNA; in fact, any sites enriched with RNA will exhibit high R/G ratios
(11-13, 33).
In order to control for RNA content in nucleoids and cytoplasm of
epulos, cells taken at the same life history stage and from the same
samples as those scanned for Fig. 3 through 6 were treated with RNase
(DNase-free RNase A; Sigma). Cells were incubated in RNase solution
(100 U/ml) for 2 h at 37°C, washed in cold phosphate buffer,
stained with acridine orange, and scanned as described above. This
control demonstrates the impact of RNA enrichment on ratios from
various samples and explains why ratios may appear to overlap for
different regions of the cells. For example, R/G ratios for cytoplasm
prior to RNase treatment ranged from 174 to 210 but dropped to 0 after
RNase treatment as red fluorescence was eliminated. For nucleoids,
ranges of ratios pre- and post-RNase treatment were 92 to 210 and 96 to
139, respectively, demonstrating that ratios for DNA did not overlap
with those of cytoplasm and cell wall.
We used a special microfluorometer equipped with both conventional and
contact fluorescence objectives for this work (5, 6). This
included an epifluorescence illuminator (OI-30; Leningrad Optical and
Mechanical Corporation) designed for work with both contact objectives
(tube length, 190 mm) and conventional objectives (tube length, 160 mm), a focusing system for contact objectives, changeable filters,
rectangular changeable measuring diaphragms, and a Nikon
photomultiplier. To create digital images which show distribution and
state of cellular components at various stages of the cell cycle, we
scanned longitudinal optical sections through the central plane of
cells. A fluorescence contact objective (60 by 1.15), a rectangular
measuring diaphragm (5 by 10 µm), and dual-wavelength
microfluorometry at 530 and 620 nm allowed us to calculate the R/G
ratio and plot values for each 5-by-10-µm frame. Digital images were
thus produced for uninucleoid (those with a single nucleoid) and
binucleoid (those with two nucleoids) cells of approximately equal size
from each separate time sample. These were then scanned into a
computer, ranges of ratios representative of different compounds were
replaced by distinctive shadings, and edges were smoothed to present a
more realistic image (see Fig. 3 and legend for details).
Microbes intended for light and electron microscopy were fixed (2%
glutaraldehyde-0.25 M sucrose-0.05 M cacodylate in distilled water or
2% glutaraldehyde-0.05 M cacodylate in filtered seawater). Light
micrographs were taken on Kodak Technical Pan film on a Leitz Orthomat
E microscope with differential interference contrast (Nomarsky) optics.
Specimens for transmission electron microscopy were postfixed in 1%
OsO4, embedded in EMBED 812 resin, thin sectioned, and
viewed on a JEOL 1200exII electron microscope.
Descriptive statistics were calculated, and statistical tests were
performed with Systat (version 5.03) and Sigma Plot.
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RESULTS |
Life cycle of E. fishelsoni.
Key events in the E. fishelsoni life cycle include changes in mean cell size as well as
changes in number, size, shape and location of nucleoids and incipient
daughter cells (Table 1; Fig.
1) (23). Because cell
replication events occur against a backdrop of consistent, daily
changes in apparent cell function and size, we distinguish the cell
cycle (restricted to cell division events) from the life cycle (which
includes events throughout a 24-h period). We term cells with a single
nucleoid uninucleoid and those with two nucleoids binucleoid. We have
encountered E. fishelsoni cells with three nucleoids, but
their extreme rarity (e.g., a single trinucleoid cell was seen among
480 cells surveyed in 1988) leads us to ignore them here.

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FIG. 1.
Light micrographs of stages in the life cycle of
E. fishelsoni taken under differential interference contrast
illumination. Bars = 50 µm. (A) A 237-µm-long cell with two
compact, apical nucleoids (arrowheads). The cell was collected at
0640 h. (B) A 45-µm binucleoid (arrowheads) cell collected at
0640 h. (C) Uninucleoid and binucleoid cells with expanded
nucleoids. The larger cell is 60 µm long. Unlike larger cells, small
nucleoids (arrowheads) of small binucleoid cells do not overlap within
the parent cell. Cells were collected at 2000 h. (D) Very small
binucleoid cells with nonoverlapping nucleoids (arrowheads). The
smallest cell (arrow) is 23 µm long with nucleoids that are <10 µm
long. The cells were collected at 2000 h. (E) A 216-µm
binucleoid cell with oval nucleoids (between arrowheads). Note the
presumed spirillum (arrow) with a length of ~18 µm. Cells were
collected at 0915 h. (F) A 195-µm-long uninucleoid cell
exhibiting presumed "caps" (see text) of condensed DNA (arrowhead)
at apices of maximally enlarged nucleoid. Cell was collected at
1640 h. (G) A 225-µm-long uninucleoid cell with optically
distinct daughter cell found only in night samples (compare with Fig.
1F). Cell was collected at 2200 h. (H) A 184-µm-long binucleoid
cell with optically distinct daughter cells. Cells were collected at
0130 h.
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In early morning, cells contain compact, round nucleoids located near
the apices of the cells (Fig.
1A and B, 2, and 3). Nucleoids
elongate
during the day until, in late afternoon and evening,
they attain a
maximum of ~75% of the parent cell length in both
uni- and
binucleoid cells with lengths of >~100 µm (
23);
nucleoids
of smaller parent cells are usually <50% of parent cell
length
and, unlike nucleoids of larger cells, do not overlap within the
parent (Fig.
1C and D; similar to morphotypes E, G, or J described
in
reference
8). Also during the day, average cell
length increases
(Table
1), and nucleoids of intermediate lengths are
encountered
(Fig.
1E), eventually growing to afternoon and evening
sizes,
at which they make up large fractions of parent cell volume
(Fig.
1F). Occasional nucleoids in cells encountered at night (Fig.
1G
and H) appeared more optically dense than usual (Fig.
1F).
In any
event, daughter cells are then released from the parent
cell, which is
destroyed in the process.
During the night, when the host fishes are inactive, binucleoid cells
are common (accounting for over 70% of all cells in
some samples
[reference
23 and this study]), as are cells that
appear to be recently released daughter cells based on their lack
of
incipient daughter cells, and average cell length declines
(Table
1).
Data are presented below for DNA content of relatively
small epulos
(category 0; length, ~30 µm), but apparent epulos
encountered late
at night and in early morning may be much smaller
(Fig.
1C and D),
approaching the lengths of more commonly studied
rod-shaped bacteria.
These cells have not been studied, but four
observations indicate that
they are small forms of
E. fishelsoni.
They are absent from
daytime samples, are largely restricted to
early morning samples,
consistently produce two daughter cells,
and link through recognizable
intermediate stages to larger epulos.
General aspects of the epulo life cycle coincide with host activities
(
21). Increase in modal size of cells and nucleoids
occurs
during the day, when hosts are actively feeding and the
gut is
completely filled with algal food materials; during this
time, pH of
gut fluids is suppressed in areas where epulos occur
in profusion
(
23,
24). Nocturnal declines in modal cell size
occur when
hosts are inactive in reef shelters; no suppression
of pH in gut fluids
is evident at night.
Structure and DNA content of compact nucleoids.
E.
fishelsoni cells collected at 0800 h included both binucleoid
cells, with two compact, round nucleoids located near the poles of the
cell (Fig. 2 and
3A), and uninucleoid cells, with a single
compact nucleoid located at one pole (Fig. 3B). To avoid variation in
dispersion and state of DNA that might be caused by comparing different
stages in the cell cycle, we initially measured total DNA on cells from
this morning collection (Table 2). As
noted above, cells in size categories II through VI were approximately
twice the volume of cells within the previous, smaller category.

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FIG. 2.
Transmission electron micrographs of compact nucleoids
of E. fishelsoni collected at 0800 h. Note presumptive
condensed DNA in chromosome-like bodies (arrowheads), delicate
cross-striations on some of these bodies, and separation of nucleoidal
material from remaining cytoplasm by structures (arrows) continuous
with similar materials below the cell wall at the tip of the cell.
Bars = 1 µm. (A) Cell fixed in 2% glutaraldehyde-0.05 M
cacodylate in filtered seawater. (B) Cell fixed in 2%
glutaraldehyde-0.25 M sucrose-0.05 M cacodylate in distilled water.
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FIG. 3.
Digital images and graphical representation of the same
images for binucleoid (A) and uninucleoid (B) E. fishelsoni
cells collected at 0800 h and containing compact nucleoids similar
to those shown in Fig. 1A and B. Both cells measured ~520 by 65 µm.
Cells were stained with acridine orange as described in the text.
Values in digital images are R/G fluorescence ratios. Numbers in
italics are values consistent with glycoprotein of cell walls; bold and
underlined numbers are values consistent with condensed DNA or
condensed DNA plus RNA; remaining values are consistent with
RNA-enriched cytoplasm, with higher values reflecting higher
concentrations of RNA. For visual clarity, ranges of values were
identified for condensed DNA, decondensed DNA, general cytoplasm,
RNA-enriched cytoplasm, and cell wall materials. Values were then
replaced by distinctive shading or hatching patterns, and the edges
were smoothed to more closely represent cell configuration. Subsequent
figures present only the graphical images; copies of the original
digital images are available from the authors and are posted on W. L. Montgomery's web site (http://www2.nau.edu/~wlm). In some figures
generated from digital images, cell wall material appears unusually
thick along sides and, particularly, apices of cells. This is due to
readings of thick optical sections along strongly curved portions of
whole cells. More accurate representations of walls occur in electron
micrographs (Fig. 2) (14, 23).
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Treatment of cells with fluorescent Fuelgen or RNase-berberine sulfate
showed that nucleoids consisted of a dense matrix of
DNA. Digital
images based on acridine orange staining yielded
R/G ratios
characteristic of condensed, double-stranded nucleic
acid
(mean = 128.3; standard deviation = 7.8). Individual
nucleoids
differed somewhat in the range of measured ratios (e.g., 119 to
140 and 131 to 140 for Fig.
3A; 107 to 135 for Fig.
3B) and in
the
specific location of particular ratios within a nucleoid,
although
values from the periphery of nucleoids were generally
higher than
values from centrally located regions.
Electron micrographs of cells from the same collections (Fig.
2)
support this interpretation, clearly showing condensed materials
at the
apices of cells. The two micrographs in Fig.
2 represent
two different
fixations yet have important similarities. The most
electron-dense
materials are arrayed in elongate strands ~200
nm in diameter,
generally appear composed of a core of darkly
staining material
surrounded by a halo of slightly less dense
material, and exhibit
striations with a periodicity of ~40 nm.
The position of the strands
(dispersed in one section, clustered
in the other) may be a function of
the plane of the section. Also,
in each case the nucleoids are
surrounded and separated from the
remaining cytoplasm by a line of
unidentified material which appears
continuous with a similar material
at the perimeter of the cell.
Microfluorometric measurements of total DNA in nucleoids of either
Fuelgen- or berberine sulfate-treated cells from the 0800-h
sample
demonstrated three patterns. First, DNA content per cell
is
proportional to cell volume over a considerable range of size
(~30 to
520 µm [Table
2]), and variation in total DNA content
for cells of
a given size, whether they were uninucleoid or binucleoid,
was
relatively low; coefficients of variation ranged from 3.1%
(group VI)
to 17.6% (group I).
Second, uninucleoid and binucleoid cells of the same size contain the
same amount of DNA (Table
3). For
example, the ratio
of total DNA in binucleoid cells (Table
3) to DNA in
the nucleoid
of a uninucleoid cell of the same size group ranged from
0.96
to 1.19 in the four groups measured; the individual ratios did
not
differ significantly from 1.0 by the chi-square test (
n =
4; ratios calculated from means of uninucleoid and binucleoid
total DNA).
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TABLE 3.
DNA content per nucleoid of uninucleoid and binucleoid
cells as determined by RNase plus berberine treatment for four of six
size groups of E. fishelsonia
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Third, for binucleoid cells of a particular size, the amount of DNA per
nucleoid is approximately identical for the two nucleoids
(Table
3).
DNA content generally differs little between daughter
nucleoids of
individual cells, with mean ratios of DNA content
in the larger of the
two nucleoids relative to the smaller nucleoid
ranging from 1.1 to 1.3. However, chi-square tests using individual
ratios for each of the 40 cells examined per size group found
no significant deviations from 1.0 in any group.
Changes in state and distribution of DNA with stages of the cell
cycle.
The following sections are best interpreted in light of the
general effects of RNase treatment on samples (Table
4). R/G ratios of the periphery of cells,
interpreted as cell wall materials, remained unchanged at 150 to 154. Ratios for cytoplasm dropped from high values to zero due to the loss
of red fluorescence from RNA. Ratios for compact, apical nucleoids
declined slightly (128.3 to 124.8) and those for apical caps remained
essentially unchanged (111.4 to 112.1), indicating little
single-stranded nucleic acid. In contrast, the mean ratio for enlarged
nucleoids declined from 145.2 to 136.7, indicating that single-stranded
nucleic acid is common in such nucleoids.
(i) Morning.
As noted above, in early morning most cells
contain compact, apical nucleoids (Fig. 1A and B). The DNA in these
nucleoids exhibited R/G ratios characteristic of condensed DNA. Ratios
for nucleoids in the samples collected at 0800 h averaged 128.3 (95% confidence interval, ±1.0 [Table 4]). Shortly before this, in samples collected at 0640 h, average R/G ratios were even lower (109.8 ± 2.5), suggesting that DNA in the 0800-h samples was
partially decondensed.
R/G ratios for the general cytoplasm and the extreme periphery of cells
were similar for the 0640- and 0800-h samples. High
ratios
characteristic of single-stranded nucleic acids, primarily
RNA,
occurred in cytoplasm at 0640 and 0800 h (182.1 ± 0.2 and
184.4 ± 0.5, respectively). Lower ratios characteristic of
proteins
and glycoproteins occurred along the edge of the cells
(150.7
± 0.2 and 151.8 ± 0.2, for the same periods,
respectively), consistent
with deposition of cell walls and, perhaps,
membrane-associated
enzymes.
(ii) Late morning.
In most cells collected between 1000 and
1100 h, nucleoids in both uninucleoid and binucleoid cells had
enlarged and shifted from the apices toward the center of the cell
(Fig. 4). Nucleoids were characterized by
decondensed DNA (reflected in an increase of the R/G ratio to 140 to
148; mean, 145.2 ± 0.4 [Table 4]) distributed evenly around the
periphery of the nucleoid and core areas rich in RNA (R/G ratios of 267 [Fig. 4]). This is likely the stage described and shown by Robinow
and Kellenberger (26). RNA-rich areas, with ratios in the
250 to 259 range, also occurred in the cytoplasm external but adjacent
to the nucleoids. The cytoplasmic mean R/G ratio (210.6 ± 2.3)
was higher than that for earlier periods when DNA was condensed,
suggesting more active RNA synthesis and transport to the cytoplasm
with decondensation of DNA. R/G ratios for peripheral portions of the
cell remained unchanged from earlier samples (151.6 ± 0.2 [Table
4]).

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FIG. 4.
Binucleoid and uninucleoid E. fishelsoni
collected at 1000 h. Dimensions: ~320 by 45 µm (A) and ~330
by 55 µm (B). Other features are as described in the legend for Fig.
3. Note expansion of nucleoids, their shift toward the center of the
cells, the concentration of decondensed DNA along periphery of
nucleoid, and the high concentration of RNA in core of nucleoids.
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(iii) Early afternoon.
Elongation of nucleoids continues until
those of both uninucleoid and binucleoid cells reach approximately 75%
of cell length (23). During this period of elongation, which
in our samples extended until at least 1430 h, R/G ratios remained
much as described for the samples from 1000 to 1100 h (Fig. 4).
DNA remained decondensed (ratios of 140 to 149) and evenly dispersed
around the periphery of the nucleoid. The interior core of the
nucleoids, as well as areas immediately external to the nucleoidal DNA
layer, continued to exhibit R/G ratios indicating RNA enrichment (245 to 255), cytoplasm external to these enriched areas remained high at
~184 to 187, and the cell edge was unchanged at ~150.
(iv) Evening.
Late in the day and into night (1640 and
2200 h), nucleoids within both uninucleoid and binucleoid cells
were surrounded by material producing ratios previously seen only at
the edge of cells (R/G ratio, ~150) and were separated from the
parent cell's periphery by a layer of material yielding ratios
characteristic of general cytoplasm (R/G ratio, 182 to 186 [Fig.
5]). Shifting between fluorescence and transmitted
light microscopy demonstrated that the areas with R/G ratios of ~150
were thickened zones surrounding nucleoids and that they were separated
from, but structurally and visually similar to, the parental cell wall.
This is consistent with electron micrographs which show nucleoids
surrounded with thick, laminar material (23) (Fig. 3 and 5
and our unpublished results). We interpret this new layer as cell wall
formation around maturing daughter cells.

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|
FIG. 5.
Formation of mature daughter cells in binucleoid and
uninucleoid E. fishelsoni collected at 1640 h.
Dimensions: ~520 by 65 µm (A) and ~530 by 65 µm (B). Other
features are as described in the legend for Fig. 3. Note formation of
presumptive cell wall material around nucleoids and the separation of
this wall material from the parental wall by a thin layer of cytoplasm.
Cells for this figure were collected at the same time as those shown in
Fig. 6A through C, emphasizing that stages in the epulo life cycle are
not precisely synchronized in time and between individual host fish.
|
|
Evening samples also contained cells with well-developed walls, with
DNA evenly dispersed immediately below the walls, and
with little or no
cytoplasm external to the DNA layer. Such cells
were of a size and
structure similar to daughter cells within
parent cells and are
interpreted as daughter cells following their
release.
(v) Early morning.
In some daughter cells collected between
1640 and 0500 h, the DNA located at one or both apices of the cell
was very highly condensed (R/G ratio, 96 to 115; mean, 111.4 ± 1.9 [Table 4]) compared to the peripheral DNA (R/G ratios, 130 to
140; mean, 138.3), and DNA near the apices appeared thicker than that
along the lateral walls (Fig. 6B C). We
termed these condensed, thickened areas of apical DNA "caps."

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|
FIG. 6.
Maturing daughter cells of E. fishelsoni
collected at 1640 h (A through C) and 0430 h (D through E).
Other features are as described in the legend to Fig. 3. (A) Daughter
cell (~390 by 45 µm) lacking caps and with decondensed DNA evenly
dispersed below the cell wall. (B) Daughter cell (~350 by 45 µm)
with two caps. (C) Daughter cell (~350 by 45 µm) with single cap.
(D) Daughter cell (~360 by 45 µm) with two caps and DNA almost
completely separated. (E) Daughter cell (~360 by 45 µm) with two
caps and DNA completely separated. Note mid-cell constriction of DNA in
panels B and C that appears unrelated to additional wall formation
(contrast with Fig. 4) and condensation of DNA in caps while that along
periphery and in center of cell remains decondensed.
|
|
Throughout the night, one encounters daughter cells with no (Fig.
6A),
one (Fig.
6C), or two caps (Fig.
1F and
6B). In many
cells collected at
0430 and 0500 h, however, the DNA was arranged
in a figure-8 form,
with the apical caps of condensed DNA located
at the top and bottom of
the "8," and with decondensed DNA near
the center of the cell
displaced inward (Fig.
6B and C) to produce
a pinched appearance. This
pinching appears to be independent
of any obvious cytological changes
such as formation of cross
walls.
Other cells sampled during these hours, also with distinct caps of
condensed DNA, exhibited complete or nearly complete separation
of the
decondensed DNA located more centrally (Fig.
6D and E),
suggesting that
this stage represents a step en route from diffuse
distribution of
decondensed DNA to its segregation to form daughter
nucleoids.
Additional condensation and aggregation of the DNA
around the caps
could subsequently produce the next distinct stage
of condensed, apical
DNA masses noted in samples from 0640 h (above).
During this
period of apparent dynamism with respect to DNA distribution
and state,
R/G ratios for cytoplasm (204.2 ± 2.0 [Table
4]) and
periphery
(151.5 ± 0.2) remained similar to those recorded at
other stages
in the life cycle.
 |
DISCUSSION |
The morning nucleoid.
Previously published electron
micrographs (14, 23) show specimens fixed in late afternoon
or evening and show considerable complexity of epulo ultrastructure,
including a trend for the nucleoid regions to be clearly separated from
surrounding materials. Where a structure responsible for this
separation has been visible, it has generally appeared thick and
occasionally laminar and has been interpreted as wall material.
Specimens used for Fig. 2 were fixed shortly after the first appearance
of apical nucleoids of condensed DNA in early morning and demonstrate
that even at this early stage in the life cycle, the nucleoid appears
to be separated from the cytoplasm. This is clearest in Fig. 2A, where
a fine, smoothly curving line surrounds the nucleoid. The identity of the delineating feature and its significance remain unclear, but spore
formation in Bacillus subtilis involves the surrounding of
an incipient spore by maternal cell membrane and the subsequent formation of a spore coat (17). Angert et al. (1)
suggest that similar events occur during daughter cell and endospore
formation in a close relative of E. fishelsoni,
Metabacterium polyspora.
Internally, the nucleoid at this time appears dominated by elongate and
possibly folded strands reminiscent of condensed chromosomes
of
dinoflagellates and other bacteria (see Fig. 3, 4, and 27 in
reference
30 and the discussion of them in reference
26).
We assume these structures are composed
primarily of DNA because
similar materials are not evident in other
parts of the cell,
and fluorescence staining with acridine orange (mean
R/G ratio
= 128.3, typical of condensed DNA) and DAPI
(4',6-diamidino-2-phenylindole)
(reference
23 and
our unpublished results) demonstrates the
presence of condensed DNA
only in these nucleoids. Possible coarse
aggregation of prokaryote DNA
(reviewed in reference
26) in
fixatives containing
glutaraldehyde cannot account for the condensed
strands seen in
electron micrographs (Fig.
2), because dispersed
nucleoidal materials
similar to more conventional views of bacterial
nucleoids are evident
in micrographs of cells treated with the
same fixatives but later in
the cell cycle (
14,
23).
Finally, R/G ratios in zones adjacent to the nucleoids indicate some
RNA enrichment (R/G ratio = 193 to 210 [Fig.
3A and B]),
but
values are much lower than those recorded for late-morning
cells with
decondensed DNA (R/G ratio = 250 to 267). While not
definitive,
this suggests less transcriptional activity of condensed
nucleic acid
compared to decondensed material, parallelling observations
from
eukaryote chromosomes.
Treatment with RNase generated additional support for this hypothesis
(Table
4). First, the highest values of R/G ratios
in cytoplasm
occurred either in cells with enlarged nucleoids
(mean R/G = 210)
or in those in transition with some DNA in condensed
caps and some
remaining dispersed (mean = 204). Note that ratios
for cytoplasm
dropped to zero after RNase treatment due to the
loss of all red
fluorescence from single-stranded nucleic acid.
Second, ratios for
apical nucleoids declined slightly (128.3 to
124.8) and those for
apical caps remained essentially unchanged
(111.4 to 112.1), supporting
the interpretation that there is
little RNA in the nucleoids during
such periods and that DNA is
condensed, double stranded, and generally
not transcribing. In
contrast, the mean ratio for the elongate
nucleoids declined from
145.2 to 136.7. This decline is consistent with
the contention
that RNA is common in such nucleoids, as indicated by
RNA-enriched
zones within nucleoids in Fig.
4. Digestion of RNA in
cells with
expanded nucleoids left a ratio higher (136.7) than that for
similarly
treated cells with compact nucleoids (112.1 and 124.8),
indicating
that a greater fraction of the DNA in enlarged nucleoids is
in
single-stranded form than in compact nucleoids. Finally, ratios
in
small areas of enlarged nucleoids (results not shown but available
from
the authors) declined to zero after RNase treatment (zeros
were not
used in calculations of R/G ratios for Table
4), again
emphasizing the
apparent concentration of RNA within the central
regions of expanded
nucleoids.
Cell size, volume, and DNA content.
E. fishelsoni
appears to be not only the largest known eubacterium but the most
variable in size as well. Most of our data derive from studies on large
cells (length, >150 µm), supplemented by work with one much smaller
group (30 to 35 µm). Four observations make it clear that group 0 cells in fact are small E. fishelsoni. First, the production
of one or two nucleoids or daughter cells within the parent cell as
well as the elongate cigar shape of E. fishelsoni cells is
consistent throughout the size range and may, in fact, extend well
below this range (Fig. 1C and D).
Second, length-width relationships (from which volume was estimated)
are consistent among epulo cells across the size range.
We performed a
linear regression on log
10(length) and
log
10(volume)
data for groups 0 and I to VI (Table
2)
supplemented with data
from cells of intermediate length not used for
DNA analyses (length
ranges of four groups: 46 to 55, 65 to 75, 94 to 109, and 113
to 137 µm); the regression
[log
10(volume) =

5.1 + 2.8 log
10(length);
r2 = 0.99, df = 9] indicates consistent length-volume, and therefore
length-width, relationships across the entire span of cell sizes.
Third, there is a consistent pattern in the range of sizes of cells
collected from hosts taken at different times of day and
night (Table
1) (
23). Small- to medium-sized cells (length,
~30 to 150 µm) prevail in the morning (0600 to 0800 h), average
length
increases during the day to a maximum in late afternoon
(ca. 1600 h), and length declines thereafter to a minimum in very
early morning
(2400 to 0400 h). Consistent with this, very small
(length, <50
µm) cells are essentially absent during the day,
occur in combination
with a wide length range of cells prior to
midnight, often dominate
epulos in fish sacrificed between midnight
and 0400 h, and decline
in frequency and eventually disappear
in later morning samples.
Finally, preliminary staining of very early morning samples with
fluorescent probes developed by Angert et al. (
2) for
large
E. fishelsoni yielded positive binding to small as well
as
intermediate sized cells (data not shown).
The roughly 30-fold increase in both cell volume and total DNA for
groups I to VI clearly exceeds the ~3.3-fold difference
or the
~10.6-fold difference expected if DNA quantity were proportional
to
length or surface area, respectively. Inclusion of group 0
in
calculations demonstrates a direct correlation between cell
volume and
DNA content across the entire size range of
E. fishelsoni measured (length, ~30 to 500 µm), with DNA content differing
>2,000-fold
among these cells. If structurally similar cells in the
10-to-15-µm
size range (Fig.
1) are in fact
E. fishelsoni
and adhere to the
same pattern of proportionality, as we suspect based
on observations
of intermediate sized cells, they would extend the
ratio of cell
volume and DNA in largest to smallest cells by at least
an additional
order of magnitude (based on the regression described
above, a
10-µm-long cell [the approximate size of daughter cells in
the
smallest parent cell of Fig.
1D] would have a volume of ~0.005
µm
3, ~1/68,000 the volume and DNA content of a
500-µm-long cell.
DNA content and distribution to daughter cells.
Flow
cytometric studies of E. coli show that DNA content varies
systematically among other bacterial cells, and to some degree with
cell size, but this variation usually represents only two- to eightfold
increases over the amount of DNA within a single genome
(29). We do not know the size of a unit genome in E. fishelsoni, but copy number in large cells appears to be very great. There are large quantities of DNA in large cells, there is
localization of DNA-specific stains to nucleoids, and fluorescence ratios indicate condensation of DNA when electron micrographs show
darkly staining, elongate structures in the nucleoids.
Many copies of a unit genome may support the growth, mobility, and
apparently active metabolism described for these giant
bacteria
(
9,
24,
26). Multiple copies of an entire genome
would also
support rapid production of daughter cells by uncoupling
potentially
rate-limiting DNA replication from DNA-subdivision
and other cell
division events.
In epulos there is low variance in DNA content for cells of a given
size, an arithmetic increase in DNA content with cell
volume, and a
ratio of DNA in the two nucleoids of binucleoid
cells that is not
significantly different from 1.0 (Table
3).
Thus, there appears to be a
mechanism for approximately equal
subdivision of large quantities of
DNA between two daughter cells
during the two rather distinct diurnal
and nocturnal phases of
the life cycle. During the day, organized
subdivision of DNA to
daughter cells occurs when both parent cells and
nucleoids are
growing, and replication must be active to maintain the
ratio
of DNA to cell volume. At night, parental cells produce smaller
daughter cells (usually 50 to 75% of parent cell length) and
replication
is likely halted or perhaps proceeding at low levels.
The mechanism for subdivision of DNA may be more complex than that
inferred by simple formation of equivalent daughter cells.
We have
recorded
E. fishelsoni cells with three daughter cells
of
roughly equal size, and some morphotypes consistently produce
up to
seven similarly sized daughter cells (
8). We lack data
on
DNA content and dynamics in these morphotypes.
Changes in state and distribution of DNA with stages of the cell
cycle.
Clearly, a complex series of events attends growth and
maturation of epulos. Quantitative fluorescence cytochemistry
demonstrates that DNA in the largest epulos exceeds amounts in the
smallest cells by 4 to 5 orders of magnitude and probably exceeds
amounts in most other bacteria by an even greater margin. Such large
quantities of DNA could pose problems for a cell undergoing the dynamic
processes of DNA replication, condensation and decondensation, and
systematic distribution to duplicate nucleoids.
Organization of DNA into discrete structures, as suggested by electron
micrographs and strong, localized fluorescence signals
from small,
delimited morning nucleoids, may overcome some of
these problems.
Structures apparent within early-morning nucleoids
(collected between
0640 and 0900 h) are reminiscent of condensed
chromosomes of other
bacteria and dinoflagellates (
26,
30),
but we lack details
of their fate during the remainder of the
day. Previous electron
micrographs of sections through enlarged
nucleoids and immature
daughter cells generally lack evidence
of such structures (
14,
23), although diffuse, darkly staining
zones are evident in the
interior cytoplasm of a daughter cell
shown in a figure by Clements and
Bullivant (Fig. 2 of reference
9). In any event, by
late morning (1000 to 1100 h), the nucleoids
exhibit evidence of
DNA decondensation (increased R/G ratios)
and increased transcriptional
activity (RNA enrichment within
the nucleoid and in adjacent
cytoplasm), and as the day and evening
progress DNA appears to continue
decondensation and widespread
dispersion.
Condensation of DNA and its association into duplicate caps by an
unknown mechanism appear to presage the formation of daughter
nucleoids
and eventually daughter cells. Conversely, replication
with formation
of a single cap could be a mechanism for increasing
DNA content of a
cell line and supporting additional increases
in cell dimensions within
that line.
Such events may be carried out without interruption of normal cell
functions. Even as caps form from highly condensed DNA,
the cells
retain dispersed and probably actively transcribing
DNA in a layer
immediately adjacent to the cytoplasm (Fig.
6B
through E). Large
quantities of cytoplasmic RNA, reflected in
our high R/G ratios for
cells throughout the life cycle, and intense,
cell-wide fluorescence
signals obtained when cells were probed
with specific 16S ribosomal
subunit sequences (
2), collectively
suggest that cells are
metabolically active at all stages.
 |
ACKNOWLEDGMENTS |
Funding was provided by the Tobias Landau Foundation; grant
3716-87 from the National Geographic Society; the Organized Research Fund of Northern Arizona University (NAU); and the Department of
Zoology, Tel Aviv University.
L. Fritz performed fixations in Eilat and, assisted by M. Sellers and
R. Earhart, the electron microscopy at NAU. Collections in Israel were
undertaken at the Interuniversity Institute of Eilat with the gracious
assistance of Avi Baranes as well as many resident faculty,
technicians, and students. Collecting permits were provided by the
Nature Protection Society (NPS) of Israel; particular thanks are due
Nurit Popper of the NPS for assistance in arranging permits and
facilitating work. Robyn O'Reilly prepared the computer maps of cells.
Gordon Southam and several anonymous reviewers provided invaluable
critiques of the manuscript.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Department of
Biological Sciences, Northern Arizona University, Flagstaff, AZ
86011-5640. Phone: (520) 523-7505. Fax: (520) 523-7500. E-mail:
Linn.Montgomery{at}NAU.EDU.
 |
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Journal of Bacteriology, November 1998, p. 5601-5611, Vol. 180, No. 21
0021-9193/98/$04.00+0
Copyright © 1998, American Society for Microbiology. All rights reserved.
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