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J Bacteriol, February 1998, p. 457-463, Vol. 180, No. 3
0021-9193/98/$04.00+0
Copyright © 1998, American Society for Microbiology. All rights reserved.
Purine Salvage in Two Halophilic Archaea:
Characterization of Salvage Pathways and Isolation of Mutants
Resistant to Purine Analogs
Birgitte
Stuer-Lauridsen
and
Per
Nygaard*
Department of Biological Chemistry, Institute
of Molecular Biology, University of Copenhagen, DK-1307 Copenhagen
K, Denmark
Received 22 April 1997/Accepted 24 November 1997
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ABSTRACT |
In exponentially growing cultures of the extreme halophile
Halobacterium halobium and the moderate halophile
Haloferax volcanii, growth characteristics including
intracellular protein levels, RNA content, and nucleotide pool sizes
were analyzed. This is the first report on pool sizes of nucleoside
triphosphates, NAD, and PRPP (5-phosphoribosyl-
-1-pyrophosphate) in
archaea. The presence of a number of salvage and interconversion
enzymes was determined by enzymatic assays. The levels varied
significantly between the two organisms. The most significant
difference was the absence of GMP reductase activity in H. halobium. The metabolism of exogenous purines was investigated in
growing cultures. Both purine bases and nucleosides were readily taken
up and were incorporated into nucleic acids. Growth of both organisms
was affected by a number of inhibitors of nucleotide synthesis.
H. volcanii was more sensitive than H. halobium, and purine base analogs were more toxic than nucleoside
analogs. Growth of H. volcanii was inhibited by
trimethoprim and sulfathiazole, while these compounds had no effect on
the growth of H. halobium. Spontaneous mutants resistant to purine analogs were isolated. The most frequent cause of
resistance was a defect in purine phosphoribosyltransferase activity
coupled with reduced purine uptake. A single phosphoribosyltransferase seemed to convert guanine as well as hypoxanthine to nucleoside monophosphates, and another phosphoribosyltransferase had specificity towards adenine. The differences in the metabolism of purine bases and
nucleosides and the sensitivity to purine analogs between the two
halobacteria were reflected in differences in purine enzyme levels.
Based on our results, we conclude that purine salvage and
interconversion pathways differ just as much between the two archaeal
species as among archaea, bacteria, and eukarya.
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INTRODUCTION |
The halophilic archaea form part of
the group Archaea, one of the three domains suggested by
Woese et al. (38) to comprise all living organisms; the
other domains are the Bacteria and the Eukarya.
The halophilic archaea (family Halobacteriaceae), here called halobacteria, have been isolated from a variety of salt-enriched habitats ranging from natural and artificial salt lakes to hides and
fish preserved by treatment with crude salt from solar evaporation ponds. All members of the halobacteria require high concentrations of
salt for growth. Some are extremely halophilic, while others are only
moderately halophilic (11, 17, 27, 32). The two species
analyzed in the present study, Haloferax volcanii and Halobacterium halobium, are examples of moderate and extreme
halobacteria, respectively. The physical and chemical conditions of the
natural environments of these organisms pose intriguing questions
regarding the nature of adaptation. The halobacteria are often found at the top level of the short food chain of hypersaline environments in
which a gradual increase in salinity has taken place (11, 29). As the preceding microbial communities release all cellular constituents when decaying, purines are likely to be present in substantial amounts in the environment. Consequently, purine salvage most likely is important for halobacteria. All microorganisms so far
examined contain a network of pathways designed to reutilize already
formed purine bases, nucleosides, and nucleotides. The extent and
composition of these metabolic reactions are highly variable between
organisms at all taxonomic levels (10, 24, 25, 35-37).
Purine metabolism has scarcely been investigated in the archaea. Most
investigations of purine salvage metabolism within the archaea have
dealt with members of the methanogens (2, 6-8, 39). The
presence of a few purine salvage enzymes in the halophilic archaeon
Halobacterium cutirubrum has been demonstrated (1,
9).
The aim of the present work was to establish and compare the purine
salvage pathways of the halophilic archaea H. volcanii and H. halobium. An integrated approach which involved
assessment of enzymatic activities in crude extracts, determination of
uptake and metabolism of [14C]purine bases and
nucleosides, and isolation and characterization of mutants resistant to
toxic purine analogs was used.
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MATERIALS AND METHODS |
Organisms, media, and growth conditions.
H.
halobium R1, a gas vesicle-deficient strain isolated
by Stoeckenius and Kunau, (34) was kindly donated by A. S. Mankin (19). The growth medium for H. halobium contained a basal salts mixture (5) including
4.3 M NaCl, 18 mM MgSO4, 13 mM KCl, 10 mM trisodium
citrate, 1.4 mM CaCl2, and 50 mM Tris-HCl (pH 7.4) supplemented with 0.4% Casamino Acids. The Casamino Acid stock solution (20%) was boiled for 1 min in the presence of 1 g of activated charcoal per liter and cleared by filtration through Whatman
I filter paper. This removes contaminant purines and pyrimidines. H. volcanii WFD11, cured for the endogenous plasmid
pHV2, was kindly provided by W. F. Doolittle. The medium for
H. volcanii consisted of a basal salts mixture
(20) containing 2.14 M NaCl, 246 mM MgCl2, 29 mM
K2SO4, 1.4 mM CaCl2, and 25 mM
Tris-HCl (pH 7.4). The salts mixture was supplemented with 1 mM
K2HPO4, 5 mM NH4Cl, 0.45% sodium
succinate, 0.05% glycerol, trace elements (Cu, Fe, Mn, and Zn),
thiamine, and biotin (16). Cells of H. volcanii and H. halobium were cultured in
Erlenmeyer flasks at 40°C. Growth was monitored by observing the
increase in absorbance (optical density [OD]) at 436 nm. The initial
OD436 was 0.02 to 0.03. Solid media contained 2% agar.
Plates of both species were incubated at 40°C in sealed plastic bags
to minimize evaporation of water.
Protein and RNA analysis.
Typically, cells from 20-ml cell
cultures, OD436 of 0.8 to 1.2, were harvested by
centrifugation for 15 min at 6,000 × g. For protein
analysis, the pellet was resuspended in a solution containing 30 mM
KH2PO4-K2HPO4 (pH 7), 1 mM EDTA, 1 mM dithiothreitol, and 0.2% Nonidet P-40 and was
homogenized in an ultrasonic disintegrator (Measuring and Scientific
Equipment, Ltd., London, United Kingdom). Protein levels were
determined by the method of Lowry et al. (18) with bovine
serum albumin as the standard. For RNA analysis, the harvested cells
were resuspended in 0.6 N perchloric acid and RNA was precipitated at
0°C for 30 min. The precipitate was washed twice with 0.6 N
perchloric acid and twice with 96% ethanol, followed by
centrifugation. RNA in the precipitate was hydrolyzed to nucleotides by
treatment with 0.3 N KOH for 18 h at 37°C, and the extract was
adjusted to pH 2 with 6 N perchloric acid. The precipitate formed was
removed by centrifugation. To determine the concentration of
nucleotides in the supernatant, the absorbance at 260 nm was measured.
Yeast RNA (Sigma Chemical Co., St. Louis, Mo.) treated the same way was
used as the standard.
Determination of nucleotide pools.
Cells were grown in the
presence of 1 mM [32P]phosphate (0.4 MBq/ml) for several
generations. A 200-µl culture (OD436, 0.6 to 0.8) was
harvested by filtration on membrane filters and extracted with 200 µl
of 0.33 M HCOOH at 0°C. Nucleoside triphosphates and PRPP
(5-phosphoribosyl-
-1-pyrophosphate) in the extract were separated by
two-dimensional chromatography on polyethyleneimine-impregnated cellulose on plastic sheets (PEI plates) and quantitated as described previously (14). NAD was separated from other
32P-labeled compounds in another PEI two-dimensional
chromatography system (28).
Enzyme assays.
Enzyme activities of crude extracts were
measured at 40°C. Extracts were made from cells grown to an
OD436 of 0.8 to 1.2. Cells in 40 ml of culture were
harvested by centrifugation and resuspended in 0.5 ml of buffer
containing 100 mM Tris-HCl (pH 7.5), 3.5 M KCl, 0.2% Nonidet P-40, and
15 units of DNase I (Boehringer, Mannheim, Germany). When no KCl was
added to the buffer, the salt concentration of the crude extract was
found by conductivity measurements to be equivalent to 0.25 M KCl. To
disrupt the cells, the suspensions were incubated on ice for 30 min and
subsequently the cell debris was pelleted. In the assay mixture (50 µl), the conversion of 14C-labeled substrate to product
was followed by these compounds being separated chromatographically on
PEI plates. Ten-microliter samples were applied to PEI plates in the
start spot at different times ranging from 10 to 60 min. During this
period the enzyme activities were proportional to the elapsed time.
Appropriate markers were applied to the spots, and the plates were
developed in water. The chromatograms were examined under UV light and
were visualized by autoradiography on Agfa Curix film. The UV spots of
interest were cut out of the PEI plate and counted in a liquid scintillation counter (Rackbeta 1209; LKB, Bromma, Sweden). Activities of guanine deaminase, AMP deaminase, adenine deaminase (26), and xanthine oxidase were measured in a mixture of 75 mM Tris-HCl (pH
7.5) and 2.5 M KCl containing 0.1 mM guanine (0.4 MBq/µmol) [
-14C]guanine, [8-14C]AMP,
[8-14C]adenine, or [8-14C]xanthine,
respectively. For the purine nucleoside kinases, the assay mixture
contained 150 mM Tris-HCl (pH 7.5), 2 M KCl, 50 mM MgCl2,
10 mM ATP, and 0.2 mM [8-14C]purine nucleosides (0.1 MBq/µmol). Coformycin (5 µM) was added to the adenosine kinase
assay mixture to inhibit adenosine deaminase activity (23).
Activity of adenosine deaminase was determined under the same
conditions as for the purine nucleoside kinases. Purine nucleoside
phosphorylase activities were measured in a solution containing 75 mM
KH2PO4-K2HPO4 (pH 7.1),
1.5 M KCl, and 0.5 mM [8-14C]purine nucleosides (0.2 MBq/µmol). The activities of adenine, guanine, xanthine, and
hypoxanthine phosphoribosyltransferase were determined
essentially as described previously (15). Adenine, hypoxanthine, and xanthine phosphoribosyltransferase were
assayed in the presence of 3 M KCl, and guanine
phosphoribosyltransferase was assayed in the presence of 1 M KCl.
Adenylosuccinate synthetase and lyase activities were determined as
described previously (31) with 1 M KCl in the assay mixture.
Radiolabeled purine compounds were obtained from NEN Life Science
Products.
Metabolism of purine bases and nucleosides.
[14C]purine bases or nucleosides were added to 2-ml
cultures of exponentially growing cells. The concentration of the
purine compound added to the medium was 100 µM (0.02 MBq/µmol) at
the start of the experiment. Ten-microliter samples of the culture were
withdrawn and applied to PEI plates at intervals until the culture
reached an OD436 of 1.0 to 1.5. The PEI plates were
developed in water. This allows the separation of the purine bases and
nucleosides from each other and from the label incorporated in the
cells. Radioactivity remaining in the application spot corresponds to that incorporated by the cells into nucleotides and nucleic acids. The
chromatograms were analyzed as described above.
Incorporation of 14C-labeled bases into RNA was determined
by the perchloric acid procedure described above. Ten to 20 µl of the
neutralized supernatants were applied to PEI plates, which were
subsequently developed in 0.5 M ammonium formate (pH 3.4). Relevant
spots (mononucleotides) were excised and counted in a liquid
scintillation counter.
Uptake of purine bases and nucleosides.
Uptake of purine
bases and nucleosides was determined essentially as described
previously (30). Exponentially growing cells were harvested
by centrifugation and resuspended in fresh medium. After 5 min of
incubation at 40°C, 1-ml samples were transferred to vials containing
1 µM [14C]purine base (2 MBq/µmol). At 30, 60, 100, and 150 s, samples of 200 µl were withdrawn and filtered through
a 0.45-µm-pore-size membrane filter. The filters were immediately
washed with 2.5 ml of basal salts mixture, dried, and counted in a
liquid scintillation counter. The rate of uptake of purine bases was
proportional to the time elapsed during the uptake experiment.
Isolation of mutants resistant to purine analogs.
Cells
growing exponentially in liquid medium were used. A 200-µl culture at
an OD436 of 0.5 to 0.7 was plated on agar medium containing
different concentrations of a given analog. At the highest
concentrations used, no mutations occurred; at the lowest concentration, a lawn of growth was seen. For H. volcanii, optimal concentrations were between 5 and 50 µM; for
H. halobium, optimal concentrations were between 0.2 and 0.5 mM. Resistant colonies were picked and streaked on a new agar
plate containing the same concentration of the analog. All mutants were
tested for cross-resistance to other analogs in the indicated
concentration range.
 |
RESULTS |
Growth characteristics and nucleotide pool analysis.
For each
of the two halobacteria analyzed, the composition of the salts mixture
reflected the composition of the natural habitat. The medium for
H. halobium contained amino acids as nitrogen and carbon sources, while that of H. volcanii contained
ammonium ions, succinate, and glycerol. Despite the richer medium,
growth of H. halobium was slower than that of
H. volcanii (Table 1).
For both strains the exponential growth phase ended at an
OD436 of 1.2 to 1.5. Throughout, we observed a 5 to 10%
stimulation of the growth rate when purine compounds were added to the
growth medium. The nucleotide pool sizes were generally two to three times higher in H. volcanii than in H. halobium. The ratios between the content of RNA and protein were
0.132 for H. halobium and 0.176 for H. volcanii, compared with 0.38 for Escherichia coli growing with a doubling time of 1 h.
Purine salvage.
Enzyme activities known to catalyze anabolic,
catabolic, and interconversion reactions of purine compounds were
analyzed in cell extracts. Both strains possessed enzyme activities
catalyzing the deamination of adenosine and guanine (Table
2). Adenosine, guanosine, and inosine can
be cleaved phosphorolytically to the free base and ribose-1-phosphate.
An alternative pathway for the metabolism of nucleosides is
phosphorylation to the corresponding nucleoside monophosphate. Except
for adenosine kinase, all of these reactions were found to occur in
both strains (Table 2). The adenosine deaminase level was high while
the level of adenosine phosphorylase was low in H. halobium. Exactly the opposite conditions were observed in
H. volcanii. This suggested that adenosine is predominantly deaminated in H. halobium and
phosphorolyzed in H. volcanii. The level of guanosine
and inosine kinase was twofold higher in H. volcanii,
which also possessed much higher levels of guanosine phosphorylase than
did H. halobium. Both species expressed similar levels
of purine phosphoribosyltransferase activities towards adenine,
hypoxanthine, and guanine (Table 2), and these levels were
not affected by free purine bases in the growth medium (data not
given). Neither xanthine phosphoribosyltransferase activity nor
xanthine oxidase activity could be measured in the presence of 3 M KCl,
1 M KCl, or no KCl in the assay mixture. Adenylosuccinate synthetase
and adenylosuccinate lyase activities were detected in both species
(Table 2).
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TABLE 2.
Activities of purine salvage and interconversion enzymes
and purine uptake in H. volcanii and
H. halobiuma
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Uptake and metabolism of [14C]purine bases and
nucleosides.
Determination of the initial rates of purine base and
nucleoside uptake at 1 µM concentrations showed that both strains
possessed high-affinity transport systems (Table 2). The highest rates of uptake were found in H. halobium. The metabolism of
purine bases and nucleosides was monitored by analyzing the
disappearance of the added purine compound (100 µM) in exponentially
growing cells. The disappearance of adenine, guanine, and
hypoxanthine from the growth medium was paralleled by
incorporation into nucleotides and nucleic acids (Fig.
1). The enzyme data (Table 2) indicated that adenine, guanine, and hypoxanthine are
phosphoribosylated to AMP, GMP, and IMP, respectively. Guanine was also
converted to xanthine, which was excreted into the growth medium, most
dramatically in H. halobium. Xanthine was not
metabolized by the two halobacteria. Generally, nucleosides were more
rapidly taken up and metabolized than their corresponding purine bases.
The catabolism of adenosine resulted in inosine and adenine. From the
amount and composition of the excretion products, it was apparent that
more adenine and less inosine was excreted by H. volcanii than by H. halobium. This actually
reflects the differences in the levels of adenosine deaminase and
adenosine phosphorylase in the two strains (Table 2). In both strains,
catabolism of inosine resulted in the excretion of excess
hypoxanthine. Catabolism of guanosine, on the other hand,
did not result in the excretion of guanine. The guanine formed
intracellularly from guanosine was to a significant extent deaminated
to xanthine, which was excreted.

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FIG. 1.
Metabolism of exogenous purine bases and nucleosides in
H. volcanii and H. halobium. The
uptake, incorporation, and excretion of [14C]purine bases
and nucleosides in growing cells were monitored. Samples of the culture
were directly subjected to ion-exchange chromatography. The system used
allowed the separation of purine bases and nucleosides in the medium
from nucleotides and nucleic acids in the cells. The distribution of
the labeling was calculated as described in Materials and Methods. Ade,
adenine; Ado, adenosine; Hyp, hypoxanthine; Ino, inosine;
Gua, guanine; Guo, guanosine.
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To analyze for possible purine interconversion pathways, cultures were
grown in the presence of radiolabeled adenine, guanine,
or
hypoxanthine. The RNA was isolated and degraded, and
the distribution
of labeling in AMP and GMP was determined (Table
3). Exogenous
adenine was incorporated
almost to the same extent into AMP and
GMP of both species. Guanine was
incorporated into GMP of RNA
in both species but into AMP only in
H. volcanii. Hypoxanthine
was incorporated into both
AMP and GMP, with most of the label
being channelled into GMP in both
species. These incorporation
studies complement the enzyme analysis by
providing evidence for
the conversion of IMP into both GMP and AMP
(Fig.
2).

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FIG. 2.
Purine salvage and interconversion pathways in
H. volcanii and H. halobium. The
individual reactions are identified by numbers: 1, adenosine deaminase;
2, adenosine phosphorylase; 3, guanosine phosphorylase; 4, inosine
phosphorylase; 5, inosine kinase; 6, guanosine kinase; 7, adenine
phosphoribosyltransferase; 8, hypoxanthine(guanine)
phosphoribosyltransferase; 9, guanine deaminase; 10, adenylosuccinate
synthetase; 11, adenylosuccinate lyase; 12, IMP dehydrogenase; 13, GMP
synthetase; 14, GMP reductase (found only in H. volcanii).
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Isolation and characterization of mutants resistant to purine
analogs.
Analysis of sensitivity and the development of resistance
to analogs affecting nucleotide metabolism provides a tool by which nucleotide metabolism can be studied (21). As a first
approach, both halobacteria were cultivated in liquid medium to which
different analogs were added. Both species were found to be sensitive
to a number of analogs (Table 4). Purine
base analogs were more inhibitory overall than purine nucleoside
analogs, and H. volcanii was more sensitive to the
analogs than was H. halobium. Five analogs, 2-fluoroadenine, 6-thioguanine, 6-methylpurine, 8-azaguanine, and
8-azahypoxanthine, were very toxic to both strains.
This is probably because all can be activated to toxic compounds
as a result of phosphoribosylation. The two guanosine analogs
6-mercaptoguanosine and 8-mercaptoguanosine and 6-mercaptopurine
riboside were much more toxic to H. volcanii than to
H. halobium. This might be explained by the
significantly higher levels of guanosine phosphorylase and guanine
phosphoribosyltransferase in H. volcanii, which may catalyze the conversion of the analogs to the toxic nucleotide compounds. A similar argument could be used to explain the sensitivity to 2-fluoroadenosine.
Spontaneous mutants of
H. halobium resistant to either
0.5 mM 8-azaadenine or 0.2 mM 8-azaguanine were selected as described
in Materials and Methods. The mutants appeared with a frequency
of
about five per 10
6 cells. Mutants resistant to 0.2 mM
8-azahypoxanthine were also
isolated. However, they grew
extremely slowly irrespective of
growth conditions. A number of mutants
were tested for cross-resistance
toward other purine analogs. The
8-azaadenine-resistant mutants
were also resistant to 6-methylpurine
and 2-fluoroadenine but
were sensitive to 8-azaguanine. The mutants
resistant to 8-azaguanine,
on the other hand, were resistant to
8-azahypoxanthine but were
sensitive to 8-azaadenine,
6-methylpurine, and 2-fluoroadenine.
Several of the
8-azaadenine-resistant mutants were further characterized
with respect
to their purine-metabolizing capabilities, and data
from two mutants
are shown in Table
5. Both were defective
in
adenine phosphoribosyltransferase activity and adenine uptake
and
showed increased guanine-hypoxanthine
phosphoribosyltransferase
activity and uptake. Several mutants
resistant to 8-azaguanine
were isolated and classified into three
classes. Data from a representative
mutant strain from each class is
shown in Table
5. Mutant strain
Hh15 showed normal guanine and
hypoxanthine phosphoribosyltransferase
activities and
uptake. Mutants of this class were not further
investigated. Mutant
strain Hh16 was defective in guanine and
hypoxanthine
phosphoribosyltransferase activities and in guanine
and
hypoxanthine uptake. Mutant strain Hh18, on the other hand,
showed a moderate decrease in guanine phosphoribosyltransferase
activity, normal hypoxanthine phosphoribosyltransferase
activity,
and reduced uptake of guanine and hypoxanthine.
All three mutant
strains showed increased adenine uptake.
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TABLE 5.
Purine phosphoribosyltransferase activity and purine
uptake in mutants of H. halobium and H. volcanii resistant to purine analogsa
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H. volcanii appeared to be very sensitive to the
analogs when tested on plates. To avoid killing of all cells, much
lower
concentrations of analogs were used to select for resistant
mutants.
Spontaneous
H. volcanii mutants resistant to
2-fluoroadenine (50
µM), 8-azaguanine (5 µM),
8-azahypoxanthine (5 µM), or 2-fluoroadenosine
(50 µM)
were isolated. As with
H. halobium, the mutants of
H. volcanii resistant to 8-azahypoxanthine
appeared to be very sick
and were difficult to grow. Overall, the
mutants of
H. volcanii resembled those of
H. halobium with respect to patterns of cross-resistance.
The
2-fluoroadenine-resistant mutants appeared with a frequency
of two per
10
6 cells. Two mutants, Hv166 and Hv174, were defective in
adenine
phosphoribosyltransferase activity, but adenine uptake was not
reduced to the same extent (Table
5). In both mutant strains,
hypoxanthine and guanine utilization was affected. Attempts
to
isolate mutants resistant to 2-fluoroadenosine that were defective
in adenosine phosphorylase failed. All resistant mutants obtained
were
defective in adenine phosphoribosyltransferase (data not
given).
Mutants resistant to 8-azaguanine appeared with a frequency
of one per
10
8 cells. Two classes were obtained, represented by mutant
strains
Hv105 and Hv118 in Table
5. Both strains showed reduced uptake
of guanine and hypoxanthine. In addition, Hv105 was
defective
in guanine and hypoxanthine
phosphoribosyltransferase activity.
Inhibitors of de novo purine synthesis.
The toxicities of
known inhibitors of purine synthesis were tested in both
halobacteria. Mycophenolic acid, known to inhibit IMP dehydrogenase
(33), and psicofuranine, known to inhibit GMP synthetase
(24), had no significant effects on growth in either species
at concentrations of 0.3 mM. Trimethoprim, a structural analog of folic
acid (40), and sulfathiazole, a structural analog of
p-aminobenzoic acid (4), are inhibitors of
one-carbon metabolism. Both compounds seriously affected the growth of
H. volcanii at concentrations of 0.03 mM (Table 4) but
were not toxic to H. halobium even at concentrations of
0.3 mM. When H. volcanii was grown with trimethoprim
(0.03 mM) plus hypoxanthine (0.1 mM) and thymidine (0.04 mM), growth was restored to a normal rate. Single addition of
hypoxanthine to trimethoprim-supplemented cultures did not restore growth. When thymidine was added together with trimethoprim, the growth yield was 60 to 80% of normal. The reduction in growth caused by sulfathiazole was restored to normal by the addition of p-aminobenzoic acid (0.05 mM) to the medium but
not by the addition of hypoxanthine and thymidine. To study
the effects of trimethoprim (0.03 mM) and sulfathiazole (0.3 mM) on
nucleotide metabolism, nucleotide pool sizes were determined. After 90 min of incubation with trimethoprim, the most significant changes in
pool sizes were a fourfold reduction in the ATP and dTTP pools and an
eightfold increase in the PRPP pool. The sulfathiazole-treated cells
showed a threefold increase in the PRPP pool (data not shown). This
swelling of the PRPP pools is an indication of arrested purine biosynthesis, also seen in bacteria (14, 25).
 |
DISCUSSION |
Purine metabolism was investigated in the halobacteria
H. volcanii and H. halobium. Nucleotide
and PRPP pool sizes were determined for the first time in archaea. The
pool sizes were four to eight times lower than those found in
enterobacteria, but the relative concentrations were similar
(21). The RNA/protein ratio was also lower than that of
E. coli. The lowest pool size and RNA/protein ratio observed
was in H. halobium. Most likely these figures
reflect the lower growth rate of H. halobium than
H. volcanii under the experimental conditions. Both
halobacteria contain extensive and active salvage and interconversion
pathways as well as high-affinity transport systems for purine bases
and nucleosides. Enzyme studies and analyses of the metabolism of
exogenous purine bases and nucleosides have revealed that the two
halobacteria contain the same purine salvage enzymes. The major
differences were that H. halobium excreted large
amounts of xanthine when supplemented with guanine (Fig. 1) and that it
was unable to convert guanine to AMP (Table 2). Guanine is initially
converted to GMP in both species, and the only known way of conversion
of GMP, and guanine compounds, to IMP is through the reductive
deamination of GMP catalyzed by GMP reductase (21, 24). This
pathway seems to operate only in H. volcanii. Both
H. volcanii and H. halobium were
capable of converting adenine compounds to GMP (Table 3). The enzyme
activities present in both halobacteria suggest that this conversion
implies formation of adenosine from adenine and ribose-1-phosphate
catalyzed by adenosine phosphorylase, followed by deamination of
adenosine to inosine catalyzed by adenosine deaminase. Subsequently,
inosine is phosphorolyzed to hypoxanthine and
ribose-1-phosphate. The latter is recycled, while
hypoxanthine can be converted to IMP and hence GMP. Such a
pathway has been identified in enterobacteria (21). The
differences in the levels of guanosine phosphorylase, adenosine
phosphorylase, and adenosine deaminase between the two species were
reflected in the patterns seen of the metabolism of exogenous
nucleosides (Fig. 1) and of the sensitivities to purine analogs (Table
4).
By selecting for resistance to purine analogs, strains defective in
purine phosphoribosyltransferase activity and/or purine base uptake in
both halobacteria were isolated. From our analysis (Tables 2 and 5), we
conclude that both species contain an adenine phosphoribosyltransferase
and a hypoxanthine(guanine) phosphoribosyltransferase. The cross-resistance pattern observed indicates that 8-azaadenine, 6-methylpurine, and 2-fluoroadenine react as adenine analogs and that
8-azaguanine, 8-azahypoxanthine, and 6-mercaptopurine are substrates for hypoxanthine(guanine)
phosphoribosyltransferase. The enzyme and uptake data further
indicate that phosphoribosylation is an important route by which
exogenous purine bases and base analogs are metabolized. The
observation that a defective adenine phosphoribosyltransferase results
in reduced adenine uptake and causes an increase in
hypoxanthine and guanine uptake (Table 5) is most likely
explained by a stimulation of hypoxanthine and guanine
metabolism (21). This stimulation may be explained by an
increase in the size of the PRPP pool as a result of the loss of a
purine phosphoribosyltransferase (13). A more complex
picture was seen with the 8-azaguanine-resistant mutants. The
H. halobium mutant strain Hh15 was not significantly
affected in hypoxanthine and guanine salvage reactions. A
similar phenotype in E. coli has been identified as a
mutation in a regulatory gene that increase the expression of the
purine biosynthetic genes (23). The result of this is an
increased capacity to synthesize purine nucleotides. Whether a similar
explanation is valid in the present case was not investigated. Mutant
strains Hh16 of H. halobium and Hv105 of H. volcanii were defective in hypoxanthine(guanine)
phosphoribosyltransferase activity and uptake, while mutant strains
Hh18 and Hv118 were defective only in hypoxanthine and
guanine uptake. On the basis of all of the results obtained, we propose
the scheme shown in Fig. 2 for the purine salvage and interconversion
pathways in the two halobacteria studied.
The most significant difference between the enzyme composition of
bacteria and that of the halobacteria is the absence of xanthine
phosphoribosyltransferase in both halobacterial species and the lack of
GMP reductase activity in H. halobium. Inosine and
guanosine kinase activities were detected in both halobacteria (Table
2). These activities have been identified in only a few species,
including enterobacteria, plants, yeast, a parasite, and human
mitochondria (12).
Two known inhibitors of purine biosynthesis, trimethoprim and
sulfathiazole, severely affected the growth of H. volcanii, but they had no effect on H. halobium
(Table 4). Inhibition caused by trimethoprim was primarily on the de
novo synthesis of dTTP, although purine biosynthesis was also
affected, as judged from PRPP and nucleotide pool size analyses. The
inhibition caused by sulfathiazole was overcome by
p-aminobenzoic acid, an intermediate compound in folic acid
biosynthesis. These findings and the isolation of dihydrofolate
reductase from H. volcanii (40) indicate
that this organism uses folic acid in its one-carbon metabolism. Since none of the inhibitors affected H. halobium, it may be
that this organism uses not folic acid but rather modified folates in
its one-carbon metabolism, as reported for the archaea
Methanosarcina thermophila and Sulfolobus
solfataricus (22). Another explanation is that neither
trimethoprim nor sulfathiazole are transported into H. halobium.
Purine salvage metabolism has been little investigated in archaea, and
most studies have involved methanogens. However, two reports have been
published on purine enzymes from H. cutirubrum, one
regarding a search for deaminase activities in crude extracts by using
guanine, guanosine, adenine, adenosine, and 2'-deoxyadenosine, as well
as a number of purine nucleotides, as substrates. Only adenosine and
2'-deoxyadenosine deaminase activities were found (1). This
agrees with the results of the present study, except for our
demonstration of the presence of guanine deaminase activity. Adenine,
hypoxanthine, and guanine phosphoribosyltransferase
activities have been demonstrated previously, but it was not
established how many enzymes were involved (9).
The most detailed studies of purine salvage in methanogens have been
performed with Methanobacterium thermoautotrophicum, using
both wild-type cells and mutants resistant to purine analogs (39). Purine salvage was assessed by determining the
incorporation of purine bases and by testing resistance to purine
analogs. Several enzymes were detected in cell extracts. The major
differences between the data obtained and our data were the following.
M. thermoautotrophicum possesses only a low level of adenine
phosphoribosyltransferase activity and showed xanthine
phosphoribosyltransferase activity. The levels of guanosine and inosine
phosphorylase were low, while the levels of inosine and guanosine
kinase were high. Both adenine and AMP deaminase activities were found
in M. thermoautotrophicum, while this organism did not
contain guanine deaminase activity. Adenosine kinase activity was
observed, but it was not established whether the activity was a direct
phosphorylation of adenosine or involved prior deamination to inosine
followed by phosphorylation to IMP (39).
A few studies have dealt with Methanococcus voltae.
This organism incorporates guanine, adenine, and
hypoxanthine into nucleic acids in amounts which
indicate that both adenine and guanine nucleotides can be derived from
any of the three bases (2). Growth of M. voltae
was also found to be inhibited by several purine analogs. Mutants
resistant to analogs like 8-azaguanine, 8-azahypoxanthine, and 6-mercaptopurine that were defective
in the incorporation of guanine and hypoxanthine have been
isolated (2). In cell extracts of M. voltae,
guanosine phosphorylase, hypoxanthine
phosphoribosyltransferase, and guanine phosphoribosyltransferase activities were demonstrated. However, it was not determined
whether the latter two activities were catalyzed by a single enzyme or by two enzymes (3).
Purine degradation has been observed in Methanococcus
vannielii, which is capable of degrading purines to an extent that
allows this archaeon to use guanine, xanthine, or
hypoxanthine, but not adenine, as the sole nitrogen source
(7, 8). Guanine can, at low concentrations, be salvaged and
converted into GMP but not into AMP (6), indicating that
M. vannielii does not posses GMP reductase activity.
Overall, the purine salvage pathways of H. volcanii and H. halobium resemble the
investigated methanogens, but significant differences exist. The
resemblance towards this phylogenically distinct group of the
Archaea is not more marked than toward members of the
Bacteria and the Eucarya.
 |
ACKNOWLEDGMENTS |
We thank Maiken Lund Jensen for excellent technical assistance,
Alexander Mankin for introducing us to the halobacteria, and Jan
Neuhard for critically reading the manuscript.
This work was supported by grants from the Danish Centre of
Microbiology.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Department of
Biological Chemistry, Institute of Molecular Biology, University of
Copenhagen, Sølvgade 83, DK-1307 Copenhagen K, Denmark. Phone: 45 3532 2005. Fax: 45 3532 2040. E-mail:
nygaard{at}mermaid.molbio.dk.
Present address: Chr. Hansen A/S, 2970 Hørsholm, Denmark.
 |
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