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J Bacteriol, February 1998, p. 938-944, Vol. 180, No. 4
Department of Bioengineering, Faculty of
Bioscience and Biotechnology, Tokyo Institute of Technology,
Nagatsuta 4259, Midori-ku, Yokohama 226, Japan
Received 2 September 1997/Accepted 6 December 1997
Escherichia coli mutants with improved organic solvent
tolerance levels showed high levels of outer membrane protein TolC and
inner membrane protein AcrA. The TolC level was regulated positively by
MarA, Rob, or SoxS. A possible mar-rob-sox box sequence was
found upstream of the tolC gene. These findings suggest
that tolC is a member of the mar-sox regulon
responsive to stress conditions. When a defective tolC gene
was transferred to n-hexane- or cyclohexane-tolerant strains by P1 transduction, the organic solvent tolerance level was
lowered dramatically to the decane-tolerant and nonane-sensitive level.
The tolerance level was restored by transformation of the transductants
with a wild-type tolC gene. Therefore, it is evident that
TolC is essential for E. coli to maintain organic solvent tolerance.
There is an increasing interest in
culturing microorganisms in two-liquid-phase systems consisting of an
aqueous medium and a hydrophobic organic solvent. Various organic
solvents used in these systems are toxic to most microorganisms because
organic solvent molecules intercalate into biological membranes and
disturb the structure of microbial membranes (4, 12, 44).
The toxicity of an organic solvent correlates inversely with the
parameter log Pow (18), the common
logarithm of the partition coefficient (Pow)
measured for the partition equilibrium established between n-octanol and water phases (24). This empirical
log Pow toxicity rule is based upon the fact
that organic solvents with lower log Pow values
bind more abundantly to viable microbial cells (3). Each
bacterium has its own intrinsic level of tolerance to organic solvents.
Any microorganism grows in the presence of organic solvents whose log
Pow values are equal to or higher than a certain
value. The most toxic solvent that an organism tolerates is called the index solvent. The index value is the log Pow
value of the index solvent (4, 18).
We have investigated the mechanism of tolerance of Escherichia
coli to organic solvents. Organic solvent tolerance levels differ
considerably among species. E. coli JA300 grows in the presence of n-hexane (log Pow, 3.9)
but not cyclohexane (log Pow, 3.4). From
E. coli JA300, we have isolated a series of mutants in which
organic solvent tolerance levels were improved stepwise. The most
tolerant mutant grows in the presence of p-xylene (log Pow, 3.1) (1). The
cyclohexane-tolerant phenotype of one of these mutants, OST3408, was
found to be due to a missense mutation in the marR gene
(7). The organic solvent-tolerant mutants are also tolerant
of low levels of multiple hydrophobic antibiotics (5). The
organic solvent tolerance levels of E. coli strains are
improved by overexpression of stress response genes marA, robA, and soxS (7, 33, 34). The
overexpression of each of these genes increases multiple hydrophobic
antibiotic and heavy metal ion resistance. These facts suggest that the
levels of tolerance to organic solvents and hydrophobic antibiotics are
controlled genetically by some common mechanism in E. coli.
The three stress response genes encode transcriptional activator
proteins for mar-sox regulon genes. This regulon is known to
contain more than 10 genes, including sodA
(manganese-superoxide dismutase), nfo (DNA-repairing
endonuclease IV), zwf (glucose-6-phosphate dehydrogenase),
fumC (fumarase C), acnA (aconitase A),
fpr (NADPH-ferredoxin oxidoreductase), and micF
(antisense RNA to OmpF transcription) (6, 8, 10, 13, 17, 26, 27,
47). Recently, it was suggested that activity of the AcrAB efflux
pump is under the control of stress response genes (29, 38).
We assume that some of the mar-sox regulon genes contribute
to elevation of organic solvent tolerance in E. coli.
In this study, we analyzed the outer membrane proteins of several
organic solvent-tolerant mutants. We show here that at least five
proteins (a 77-kDa unidentified protein, TolC, LamB, OmpF, and OmpX)
are likely to be under the control of stress response genes. OmpF
synthesis is known to be regulated by antisense micF RNA.
Among these proteins, TolC seems to play the most important role in
maintaining and improving the organic solvent tolerance level of
E. coli. In addition, the mutants showed high levels of AcrA
in the inner membrane, suggesting that the amount of expression of the
AcrAB efflux pump system had increased.
Organisms and plasmids.
The organisms and plasmids used in
this study are listed in Table 1.
E. coli K-12 JA300 is an n-hexane-tolerant and
cyclohexane-sensitive strain (F
0021-9193/98/$04.00+0
Copyright © 1998, American Society for Microbiology. All rights reserved.
Involvement of Outer Membrane Protein TolC, a
Possible Member of the mar-sox Regulon, in Maintenance
and Improvement of Organic Solvent Tolerance of Escherichia
coli K-12
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ABSTRACT
Top
Abstract
Introduction
Materials & Methods
Results
Discussion
References
![]()
INTRODUCTION
Top
Abstract
Introduction
Materials & Methods
Results
Discussion
References
![]()
MATERIALS AND METHODS
Top
Abstract
Introduction
Materials & Methods
Results
Discussion
References
thr leuB6 trpC1117
thi rpsL20 hsdS) (21). OST3408 and OST3410 are
spontaneous mutants derived independently from JA300 (1, 5).
OST3408Tc was an OST3408-based
zde-234::Tn10 (tetracycline-resistant [Tcr]) transductant (7). JA300R and JA300S are
zde-234::Tn10 (Tcr)
transductants constructed by P1 transduction from OST3408Tc to JA300.
JA300R is cyclohexane tolerant, and JA300S is cyclohexane sensitive.
JA300T and OST3408T are JA300- and OST3408-based tolC transductants, respectively. Bacillus subtilis GSY1026
(2) was used as one typical strain of gram-positive
bacteria.
TABLE 1.
Bacterial strains and plasmids used
Culture conditions. The organisms were grown aerobically at 37°C in Luria broth (LB medium; pH 7.0) consisting of 1% Bacto Tryptone (Difco Laboratories, Detroit, Mich.), 0.5% Bacto Yeast Extract (Difco), and 1% NaCl. This medium supplemented with 0.1% glucose and 10 mM MgSO4 (LBGMg medium) was also used (1).
Measurement of the organic solvent tolerance level. Organic solvent tolerance levels of the bacteria were determined by measuring colony formation on LBGMg agar overlaid with a particular organic solvent (4).P1 transduction. Generalized transduction was done using phage P1kc by the methods described by Miller (32). OST3408Tc (cyclohexane tolerant and Tcr) and JA300 were used as the DNA donor and as the recipient strain, respectively. Tcr transductants were selected on LB agar containing tetracycline (20 µg/ml). From the Tcr transductants, cyclohexane-tolerant JA300R and cyclohexane-sensitive JA300S were selected.
JA300- and OST3408-based tolC transductants were constructed using CH1692 (tolC) as the DNA donor strain. JA300 and OST3408 cells were infected with the P1kc phage grown on CH1692 and incubated in LB medium containing 0.5 M trisodium citrate for 4 h at 37°C. Then, colicin E1-resistant clones were selected. Among the colicin E1-resistant clones (27 clones from JA300 and 11 clones from OST3408), about half did not grow on LB agar containing 1% sodium dodecyl sulfate (SDS) or on MacConkey agar, respectively. The colicin E1-resistant and detergent-hypersensitive strains JA300T and OST3408T were used as tolC-defective strains.Preparation of membrane protein. E. coli was grown in LBGMg medium. Cells were harvested from the culture (optical density at 660 nm, 0.6) by centrifugation (5,000 × g, 10 min, 4°C), suspended in cold 50 mM phosphate buffer (pH 7.2), and broken by sonication. Unbroken cells were removed by the centrifugation. The supernatant was centrifuged at 100,000 × g for 45 min at 4°C. The precipitate was washed with phosphate buffer and incubated in phosphate buffer containing 0.5% sodium dodecyl sarcosinate (sarcosyl) for 30 min at room temperature at a protein concentration of 3 mg/ml (14). The suspension was centrifuged at 100,000 × g for 45 min at 10°C. The supernatant was recovered and used as the inner membrane protein fraction. The precipitate was washed again with the sarcosyl-phosphate buffer. The sarcosyl-insoluble fraction was used as the outer membrane protein fraction.
SDS-polyacrylamide gel electrophoresis.
Samples were
dissolved in a solubilization buffer containing 1% (wt/vol) SDS, 2.5%
(vol/vol)
-mercaptoethanol, 20% (vol/vol) glycerol, and 16 mM
Tris-HCl (pH 6.8) and heated in a boiling water bath for 5 min. The
samples were run on SDS-polyacrylamide gels as described by Laemmli
(22).
Protein content. Protein content was measured by the method of Lowry et al. (28).
N-terminal amino acid sequence. The N-terminal amino acid sequence was determined by Edman degradation using a Protein Sequencer 477A (Applied Biosystems Inc., Foster City, Calif.).
Materials. Plasmid pUX was obtained from M. Wachi of the Tokyo Institute of Technology. Antisera against TolC and AcrA were kind gifts from Joe A. Fralick of Texas Tech University and H. Nikaido of the University of California, Berkeley, respectively. Colicin E1 was purchased from Sigma-Aldrich Research. Organic solvents used were of the highest quality available and were purchased from Wako Pure Chemical Industries (Osaka, Japan). The log Pow values of organic solvents and antibiotics were calculated by the addition rule (24) using the log Pow calculation software ClogP version 1.0.3 (Bio Byte Corporation, Claremont, Calif.).
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RESULTS |
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Composition of outer membrane-associated protein in cyclohexane-tolerant mutants. Membrane proteins from the cyclohexane-tolerant mutants, OST3408 and OST3410, were fractionated by solubilization in sarcosyl and analyzed by SDS-polyacrylamide gel electrophoresis with Coomassie brilliant blue R-250 staining (Fig. 1). Comparisons of protein composition indicated that several outer membrane proteins (sarcosyl-insoluble membrane proteins) were altered quantitatively in these mutants as compared to the parent strain.
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Identification of the outer membrane proteins showing quantitative alteration in the mutants. The 53-kDa protein was recovered from the gel on which the outer membrane proteins of OST3410 had been electrophoresed. The N-terminal amino acid sequence of the 53-kDa protein was examined and, while the first residue could not be determined, the sequence of the next residues was found to be H2N-XNLMQVYQQA. This was consistent with the sequence, H2N-ENLMQVYQQA---, reported for the mature form of TolC (36), a 51,468-Da outer membrane protein of E. coli. The location, molecular mass, and N-terminal amino acid sequence of the 53-kDa protein were similar to those of the TolC protein. This 53-kDa protein was not found in JA300T and OST3408T (Fig. 2A). In addition, the 53-kDa proteins of OST3408 and OST3410 were reactive with an antiserum against TolC (Fig. 2B). These genetic and serological analyses supported identification of the 53-kDa protein as TolC protein. Therefore, it was concluded that both of these spontaneous mutants isolated independently from JA300 possessed high amounts of TolC.
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Increase in levels of TolC in cyclohexane-tolerant marR08 transductants. Recently, we showed that the elevated level of organic solvent tolerance in the case of OST3408 was due to a missense mutation, R73S, in marR, encoding a repressor protein for the mar operon in the E. coli chromosome. In OST3408 and OST3410, the mar-sox regulon genes, such as sodA and zwf, are expressed at high levels (results not shown). The mutant marR gene (marR08) is cotransducible with zde-234::Tn10 of OST3408Tc to JA300 by P1 transduction (7). Among the zde-234::Tn10 (Tcr) transductants, JA300R (cyclohexane tolerant) and JA300S (cyclohexane sensitive) were used in this study. Outer membrane proteins of these strains were analyzed by gel electrophoresis (Fig. 2). The level of TolC protein in JA300R was as high as that in OST3408 and higher than that in JA300. In addition, the amounts of the 77-kDa protein and OmpX were increased and the amount of the 46-kDa protein was decreased. Levels of the four proteins were identical in JA300S and JA300. Thus, it was concluded that the increase in TolC was closely related to the marR08 mutation responsible for the cyclohexane-tolerant phenotype in OST3408, although the mutation in OST3410 has not been clearly identified.
Increase in levels of TolC in cyclohexane-tolerant E. coli cells carrying multiple copies of marA, robA, or soxS. The organic solvent tolerance level of E. coli is improved by overexpression of marA, robA, or soxS. Most E. coli strains acquire cyclohexane tolerance by transformation with any one of these genes (7, 33, 34). We examined TolC production in these transformants (Fig. 2). Each transformant of JA300 cells carrying pHA105, pOST42BR, or pHc3R produced a higher amount of TolC than JA300 carrying or not carrying pBluescript II. In particular, TolC production was high in JA300 carrying pHA105 or pHc3R. The levels of TolC were similar in JA300 and JA300(pBluescript). These results strongly suggest that TolC production is regulated by each of the products of these genes.
Also, the other outer membrane proteins dealt with in this report were altered quantitatively in the JA300-based transformants. The amount of the 77-kDa protein was increased and the amount of LamB was decreased in each of the three transformants. The amount of OmpX was clearly increased in JA300(pHA105), compared with JA300(pBluescript II). However, the increase was not as high in JA300 carrying pOST42BR or pHc3R as in JA300(pHA105). The quantitative alterations of the outer membrane proteins described above were not specific for JA300. MC4100(pBluescript II) did not produce a detectable amount of LamB when grown in the absence of maltose (results not shown). LamB was induced strongly in MC4100 grown in the presence of 0.2% maltose. Maltose-induced LamB production was lowered remarkably by transformation with pHA105. Amounts of the 77-kDa protein, 53-kDa TolC, and 18-kDa OmpX increased in MC4100(pHA105) compared with MC4100(pBluescript II). Therefore, it was evident that expression of the 77-kDa outer membrane protein, OmpX, and TolC was regulated positively. It is likely that the genes coding for these proteins are members of the mar-sox regulon. Production of OmpF and LamB was regulated negatively by MarA also in MC4100. OmpF production is known to be inhibited at the translation step by micF antisense RNA, which is a member of the mar-sox regulon (8), although it is not clear whether LamB production is regulated at the transcription or translation level.Diminished levels of organic solvent tolerance due to lack of tolC. As described above, it was shown that the amount of TolC was always higher in E. coli mutants with improved organic solvent tolerance levels, although the other phenotypic alterations were found commonly. Organic solvent tolerance levels of the tolC-defective transductants, JA300T and OST3408T, were measured on LBGMg agar (Table 2). JA300 is n-hexane (log Pow, 3.9) tolerant, and OST3408 is cyclohexane (log Pow, 3.4) tolerant. JA300T and OST3408T were hypersusceptible to organic solvents. Both of these transductants were decane (log Pow, 6.0) tolerant and nonane (log Pow, 5.5) sensitive. These tolerance levels are extremely low among various strains of E. coli (33). Both strains showed susceptibility similar to that of B. subtilis, which is highly sensitive to solvents. Thus, it is evident that TolC plays an important and indispensable role in determination and maintenance of organic solvent tolerance in E. coli.
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Hydrophobic antibiotic tolerance of organic solvent-tolerant derivatives. OST3408 and OST3410 show tolerance to low levels of multiple hydrophobic antibiotics (5). OST3408T lacks this antibiotic tolerance (Table 3) and is as susceptible to hydrophobic antibiotics as JA300T. In particular, these strains were hypersusceptible to novobiocin (log Pow, 3.8), which is the most hydrophobic among the antibiotics tested. Therefore, it seems likely that the low-level antibiotic tolerance found in the organic solvent-tolerant mutants results from the presence of tolerance machinery which has TolC as an indispensable element.
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Increase in levels of AcrA in cyclohexane-tolerant mutants. It has been shown that the AcrAB efflux pump is responsible for multiple drug resistance (38). We could not detect AcrA or AcrB in the sarcosyl-soluble membrane protein fractions of the cyclohexane-tolerant mutants by dye staining (Fig. 1). Proteins in the fractions were serologically analyzed using an antiserum against AcrA (Fig. 3). Only one protein band, with a size of 44 kDa, was found to cross-react with AcrA. The mature AcrA protein is reported to be an inner membrane-associated lipoprotein, and the molecular mass of the peptide moiety is 39,723 Da (30). The protein was concluded to be AcrA.
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DISCUSSION |
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The cyclohexane-tolerant phenotype of OST3408 is due to the marR08 mutation (7). Although OST3410 has not been analyzed sufficiently, a preliminary analysis by P1 transduction showed that the site of the mutation in OST3410 is as near zde-234::Tn10 as marR08 (results not shown). In fact, these two mutants show very similar phenotypes (5, 33), although several phenotypic alterations are more pronounced in OST3410 than in OST3408 (3, 5, 33). Probably, marA expression is derepressed and mar-sox regulon genes are transcribed actively in OST3408 and OST3410.
We have reported that levels of OmpF are decreased in organic solvent-tolerant mutants isolated from JA300 (3). We show here the identification of the other outer membrane proteins showing quantitative alteration in the mutants (Fig. 1). Not only OmpF but also LamB was produced in decreased amounts in the mutants. Increased amounts of the 77-kDa protein, TolC, and OmpX were found. We are interested in TolC synthesis especially, among the five proteins, because the amount of TolC expressed is likely the most important in determining the cyclohexane-tolerant phenotype.
The amount of TolC was elevated in JA300 carrying a high-copy-number
plasmid coding for MarA, Rob, or SoxS (Fig. 2). These proteins are
transcriptional activators for mar-sox regulon genes (6, 10, 13, 16, 20, 25, 42, 47). The results shown in this
report demonstrate that TolC synthesis is regulated positively by these
proteins. A consensus sequence of the sox-mar-rob box bound
by the activator proteins has been proposed as
AYNGCAYNRRNNRNYANNNNNWNNNNNNYW (R, A or G; Y, T or C; W, A or T)
(13) or ANNGCAYNNNNNNNCWA (Y, C or T; W, A or T)
(25). It is interesting that we can find the consensus box
sequence ATGGCACGTAACGCCAACCTTTTGCGGTCA at a location
upstream (
96 to
73) of the structural tolC gene. This sequence found upstream corresponds to both consensus box sequences proposed independently. The presence of this consensus sequence suggests that tolC expression might be regulated directly by
the transcriptional activator proteins, although binding of the
activator proteins to the tolC sequence must be proven
experimentally. It is likely that tolC is a novel member of
the mar-sox regulon.
OmpX synthesis is likely to be regulated positively by MarA, Rob, or SoxS (Fig. 2). In particular, the synthesis was high in JA300 derivatives in which MarA production was elevated rather than that of Rob and SoxS. The regulatory mechanism controlling OmpX synthesis is not clear. Genes homologous to ompX are present widely among members of the family Enterobacteriaceae. However, the functional role of OmpX in E. coli is still unclear (31, 45).
TolC is absolutely required for maintenance of the organic solvent tolerance levels displayed by most strains of E. coli (Fig. 3 and Table 2). Generally, gram-negative bacteria are more tolerant of organic solvents than gram-positive bacteria (18). However, JA300T and OST3408T are as susceptible to organic solvents as B. subtilis GSY1026. The tolC-defective strains are susceptible even to n-nonane, which scarcely binds to JA300 cells (3).
Enhancement of TolC synthesis seems essential to improve organic solvent tolerance levels of E. coli. However, an increase in TolC level alone was not effective in improving the cyclohexane tolerance level of JA300(pUX). It is known that TolC forms a channel for various compounds (35). TolC likely serves as an essential element of some machinery responsible for tolerance to various compounds, including organic solvents and hydrophobic antibiotics (Table 3). This putative tolerance machinery is invalid for hydrophilic inhibitors, such as kanamycin. With respect to the other four proteins, it seems unlikely that the quantitative alterations observed are related to improvement of organic solvent and antibiotic tolerance levels since OST3408T showed high levels of the 77-kDa protein and OmpX and low levels of LamB and OmpF as compared with JA300T. MC4100 cells grown in the presence and absence of maltose showed no difference in organic solvent tolerance levels, although the LamB levels differed greatly (results not shown). However, we cannot rule out the possibility that these proteins have some effect on tolerance or function synergistically with TolC, in particular the 77-kDa protein or OmpX.
TolC is proposed to constitute an efflux pump together with the AcrAB
complex (15). The AcrAB complex is a major
µH+-dependent pump responsible for resistance to many
hydrophobic agents (39). An activity of the efflux pump is
suggested to be regulated by MarA (38). We have found that
the amount of AcrA expressed from the chromosomal acrAB
operon was elevated in OST3408, OST3410, OST3408T, JA300R, and JA300,
each carrying marA, robA, and soxS
(Fig. 3). We cannot detect AcrB by SDS-polyacrylamide gel
electrophoresis and dye staining (Fig. 1), probably due to its high
molecular mass and complex folding in the inner membrane. We suppose
that AcrB production was elevated together with AcrA since the two
genes consist of a common transcriptional unit. The
cyclohexane-tolerant derivatives showed high levels of both TolC and
AcrA. OST3408T possessing a high level of AcrA but not TolC was
hypersusceptible to organic solvents, while this organism carrying pMX
was cyclohexane tolerant (Table 2).
Therefore, we conclude that TolC, which is expressed in elevated amounts, contributes to improvement of organic solvent tolerance levels by serving as a component of tolerance machinery, such as the AcrAB efflux pump. After the first version of this report was submitted, it was shown that the acrAB locus was linked to n-hexane tolerance (46). Although little is known about bacterial organic solvent tolerance mechanisms (43), the toluene tolerance of Pseudomonas putida seems to be energy dependent (19, 41). Also, the organic solvent tolerance of E. coli is energy dependent (37). An efflux pump similar to the AcrAB-TolC complex (for example, the Mex pump system [40]) might be responsible for the toluene tolerance in strains of P. putida.
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ACKNOWLEDGMENTS |
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This work was supported in part by a grant-in-aid (Bio Media Program; BMP97-V-1-3-10) from the Ministry of Agriculture, Forestry, and Fisheries of Japan.
We thank M. Wachi, Joe A. Fralick, and H. Nikaido for kind supplies of plasmid pUX and antisera against TolC and AcrA, respectively.
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FOOTNOTES |
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* Corresponding author. Mailing address: Department of Bioengineering, Faculty of Bioscience and Biotechnology, Tokyo Institute of Technology, Nagatsuta 4259, Midori-ku, Yokohama 226, Japan. Phone: 81-45-924-5776. Fax: (81) 45-924-5819. E-mail: raono{at}bio.titech.ac.jp.
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