J Bacteriol, March 1998, p. 1053-1062, Vol. 180, No. 5
0021-9193/98/$04.00+0
Copyright © 1998, American Society for Microbiology. All rights reserved.
andMolecular Control and Genetics, ABL-Basic Research Program, NCI-Frederick Cancer Research and Development Center, Frederick, Maryland 21702
Received 23 October 1997/Accepted 2 January 1998
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ABSTRACT |
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Inactivation of transcription factor
54, encoded by
rpoN (glnF), restores high-temperature growth
in Luria-Bertani (LB) medium to strains containing the heat-sensitive
cell division mutation ftsZ84. Mutational defects in three
other genes involved in general nitrogen control (glnD,
glnG, and glnL) also suppress lethal
filamentation. Since addition of glutamine to LB medium fully blocks
suppression by each mutation, the underlying cause of suppression
likely derives from a stringent response to the limitation of
glutamine. This model is supported by several observations. The
glnL mutation requires RelA-directed synthesis of the
nutrient alarmone ppGpp to suppress filamentation. Artificially
elevated levels of ppGpp suppress ftsZ84, as do RNA
polymerase mutations that reproduce global effects of the ppGpp-induced
state. Both the glnF null mutation and an elevated copy
number of the relA gene similarly affect transcription from
the upstream (pQ) promoters of the ftsQAZ operon, and both
of these genetic conditions increase the steady-state level of the
FtsZ84 protein. Physiological suppression of ftsZ84 by a
high salt concentration was also shown to involve RelA. Additionally, we found that the growth of a glnF or glnD
strain on LB medium depends on RelA or supplemental glutamine in the
absence of RelA function. These data expand the roles for ppGpp in the
regulation of glutamine metabolism and the expression of FtsZ during
cell division.
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INTRODUCTION |
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Septation is the bacterial equivalent of cytokinesis and involves the regulated formation of a specialized cell wall at the midpoint of the dividing cell during vegetative growth. In Escherichia coli, loss of septation causes the formation of multinucleate cell filaments and eventual death. FtsZ is a GTPase and is the most abundant of several cell division proteins whose activity is essential for septation (for reviews, see references 29 and 51). FtsZ appears to guide septal invagination. Its subcellular distribution cycles with growth, coalescing at the division site during cytokinesis and then dispersing into the cytosol afterward (33, 40). This bimodal property could reflect a cyclic progression of FtsZ through active and inactive states. Much evidence supports the idea that the cellular activity of FtsZ depends on a dynamic self-polymerization reaction involving changes in localized concentration and a GTPase cycle akin to the tubulin proteins of eukaryotic cells (4, 6, 11, 35, 44, 60, 65). The thermosensitive allele ftsZ84 has been the subject of numerous investigations into the nature of septation since its initial description more than 2 decades ago (47). Genetic, biochemical, and microscopic studies of ftsZ84 strains have helped to generate a model that assigns a structural, and perhaps kinetic, role to FtsZ throughout cytokinesis, as well as a regulatory role for the commencement of septation. The process of discovery and characterization of additional factors affecting FtsZ continue to refine our understanding of its function in the cell cycle.
Purified FtsZ84 protein has reduced GTPase activity at elevated temperature, and cell filamentation is the consequence of this defect in vivo. This filamentation is relieved by growth media of high osmotic strength, a phenomenon originally called "salt repair" (47). The mechanism of salt repair for ftsZ84 is not understood. Conditional lethality imparted by ftsZ84 is genetically suppressed by increased dosages of some genes. Most notably, when present in multiple copies, the ftsZ84 allele suppresses itself, verifying that lethality owes to its reduced activity (39). Three extragenic loci have been characterized as suppressors of ftsZ84 when present in high dosages: the gene encoding the transcription factor SdiA (66) and two genes for regulators of capsular polysaccharide synthesis, rcsB and rcsF (20, 21). The connection between capsule gene regulation and septation is not clear. Too much FtsZ activity also disrupts normal septation (13, 67). Interestingly, this condition of FtsZ excess suppresses filamentation caused by abnormally high expression of another cell division gene, ftsA, which suggests the necessity of a dosage equilibrium between FtsA and FtsZ for their proper functioning (10, 12, 13).
The ftsZ and ftsA genes and another cell division
gene, ftsQ, form a complex operon which comprises the distal
end of a cluster of 16 aligned and overlapping genes concerning cell
division and cell wall metabolism (3). The ftsQAZ
operon contains several promoters, and there is genetic evidence for
the influence of factors at some of these promoters. The majority of
transcripts containing ftsZ appear to originate from
promoters located 5' of the operon (19, 69). One of these
promoters (Qp2) is up-regulated by SdiA (66), and another
(Qp1) is positively regulated by the stationary growth phase sigma
factor
s (2, 56). Also contributing to FtsZ
expression are four internal promoters (Ap, Zp2, Zp3, and Zp4) located
within the ftsQ and ftsA coding regions
(30) and antisense RNAs that are complementary to the 5'
region of ftsZ (14, 50, 58). The activities of some of these promoters vary inversely with the growth rate
(2), and the levels of ftsZ transcripts appear to
oscillate with the cell cycle (19). The short-lived
nucleotide guanosine tetraphosphate has recently received attention as
a possible effector of cell division (61-63). Guanosine
tetraphosphate and the related compound guanosine pentaphosphate,
together referred to herein simply as ppGpp for brevity, function as an
alarmone system and are believed to integrate cellular responses to
various forms of nutrient stress (8). Natural synthesis of
ppGpp in Escherichia coli occurs exclusively from the RelA
and SpoT proteins, and the principal contribution is made by RelA. SpoT
normally degrades ppGpp but has synthetic activity under certain
conditions (27, 68). In the classic stringent response to
the presence of uncharged tRNA, ppGpp increases the fidelity of protein
translation (36). ppGpp also globally regulates gene
expression by affecting initiation or pausing of RNA transcription and
can have a positive or negative effect, depending on the targeted
promoter. The identification of mutant
70,
, and
'
subunits of RNA polymerase that mimic the ppGpp-induced state supports
the idea that this signal exerts an important effect at the level of
transcription (8, 26).
Until now, no mutation has been reported that suppresses the high-temperature lethality of ftsZ84 on Luria-Bertani (LB) medium. Several chromosomal mutations are identified here that restore septation and high-temperature growth on LB medium to strains having the ftsZ84 mutation. Four of these suppressors are loss-of-function alleles for different genes that regulate general nitrogen assimilation and glutamine metabolism during nitrogen-restricted growth. The data presented here indicate that the likely mechanism of suppression by these mutations involves RelA-dependent synthesis of the nutrient starvation signal ppGpp in response to glutamine limitation. This introduces evidence associating ppGpp with glutamine regulation on LB medium.
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MATERIALS AND METHODS |
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Strains, plasmids, bacteriophages, and growth media.
The
bacterial strains, plasmids, and bacteriophages used in this study are
listed in Table
1. The
ftsZ84 strains used in this study have the genetic
background of W3110
(lac)U169 (Court laboratory strain WJW45), except as specifically noted otherwise. Parental strain BSP610 and its derivatives were constructed by P1vir transductions using standard procedures
(34) in the following steps. To make BSP610, the
ftsZ84 allele of strain JFL100 was first linked to a
leu::Tn10 marker and then cotransduced
into WJW45 by selection for tetracycline resistance. Heat-sensitive transductants were then converted back to Leu+ prototrophy
by using a P1 lysate of WJW45 as the donor and selection on
minimal-salts medium plus glucose medium, with subsequent confirmation of heat sensitivity and tetracycline sensitivity. Mutations of glnA, glnD, glnE, glnF,
glnG, and gltB were introduced into BSP610 and
congenic FtsZ+ parental strain WJW45 by P1vir
transductions from phage stocks prepared on donor strains containing
the given mutation, employing selection for the drug resistance marker
associated with each mutation. Unmarked mutations in glnL,
glnB, and gltBDF were introduced, respectively,
by transductions into the glnA, glyA, and
glnF derivatives of BSP610 and WJW45 by selection for
prototrophic conversion of these linked mutations.
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phenotype,
i.e., with a mutation of glnF, glnD,
glnG, or glnL. Tetracycline was sometimes
included in the medium during the construction of ftsZ84 relA
glnF strains.
The phenotypes of glutamine prototrophy versus auxotrophy and the
presence versus the lack of nitrogen control were tested, respectively,
by plating at 32°C on M63 salts with glucose with or without
glutamine (0.2% [wt/vol] each) and on ammonium-free W salts plus
glucose medium containing either glutamine or arginine at 0.2%
(wt/vol) as the sole source of nitrogen (57). Amino acid
supplementation tests on ftsZ84 suppressors used LB plates that individually contained each amino acid at a 0.05% (wt/vol) final
concentration.
Thermosensitivity tests. While the thermosensitivity of ftsZ84 is known to vary among laboratories, often requiring LB medium without added sodium chloride, we have found that our standard LB medium (10 g of Bacto Tryptone, 5 g of NaCl, 8 g of yeast extract; sterilized via autoclave) consistently produces filamentation and lethality at 42°C for ftsZ84 strains in our W3110 genetic background. We observed that other ftsZ84 strains of different genetic backgrounds were less sensitive on this LB medium, and so all heat sensitivity tests were performed on BSP610 and its derivatives. Heat sensitivities and filamentation were assayed by monitoring colony formation on LB plates and by microscopic inspection of suspended colonies or liquid LB cultures.
Assays for ftsQAZ operon expression.
Reporter
constructs containing ftsQAZ fusions to lacZ were
introduced into tester strains either on low-copy-number plasmids (9) or in single copy on lambda prophages (Table 1). Phages
BBP133 and
BBP134 contain 342 nucleotides 5' of the
ftsZ start codon, which includes promoter Zp2, along with
the first 11 codons of ftsZ joined to lacZ in
protein and operon fusion configurations, respectively. To make these,
DNA was amplified from the chromosome by using the oligonucleotide
primers gttgacgaattcaagcttcgccaacaaggggttaaacatcac and
actttaggatccgcgtcattggtaagttccattggttcaaac and ULTma DNA polymerase (Perkin Elmer) and then digested with EcoRI and
BamHI and cloned into plasmids pRS414 or pRS415
(55), making plasmids pBP133 and pBP134, respectively. The
absence of potential errors acquired during cloning was confirmed by
direct sequencing of plasmids with the ABI Prism DNA Sequencing kit
(Perkin Elmer) and a 373A DNA sequencer (Perkin Elmer). DNA sequences
were assembled and analyzed by using Sequencher 3.0 (Gene Codes Corp.)
and the Genetics Computer Group (Madison, Wis.) package, version 8.0. Each fusion was recombined from a plasmid onto
BDC531 to make phages
BBP133 and
BBP134 and used to infect BSP610, and prophage
lysogens were screened for unit copy number as previously described
(42). These strains were used as parental strains for all
related strain constructions.
-Galactosidase activities were assayed
by method B of Miller (34) with the following modification.
Cultures were harvested by twofold dilution into ice-cold stop solution
comprised of Z buffer plus 60-µg/ml chloramphenicol and 0.04% sodium
azide.
Quantitation of FtsZ protein. The steady-state level of FtsZ84 protein in various strains was measured by Western blot assay done by standard procedures (23) and the protocols specified by the manufacturers of the electrophoretic and immunologic reagents. Overnight LB cultures were refreshed by 200-fold dilution and grown at 30°C to an optical density at 600 nm of 0.2 and then shifted to 42°C and grown for 2.5 h. Aliquots were collected at equivalent points in their respective growth curves, and volumes were normalized by optical density (5 ml at an optical density at 600 nm of 0.2). Cells were collected by centrifugation, washed in stop solution (described above), frozen immediately on dry ice, and then stored frozen until later use. To prepare extracts, cell pellets were thawed in 0.5 ml of buffer (50 mM sodium phosphate [pH 7.4], 10 µl of 10-mg/ml phenylmethylsulfonyl fluoride [Boehringer Mannheim]), mixed gently, passed through another freeze-thaw cycle, and then disrupted by sonication. Total protein was estimated via protein assay (Bio-Rad), and then cell extracts were normalized among each other by total protein concentration. Extracts were serially diluted into sodium dodecyl sulfate-polyacrylamide gel electrophoresis loading buffer and boiled briefly. Several dilutions of extract from each strain were tested. Proteins were fractionated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis and transferred to nitrocellulose (Schleicher & Schuell Inc.) or Immobilon (Millipore) for immunoblot analysis. FtsZ was detected with anti-FtsZ serum and compared to purified FtsZ (gifts from the Rothfield laboratory) by using a peroxide-labeled secondary antibody and a LumiGlo chemiluminescent substrate kit (Kierkegaard & Perry). Band densities on X-Omat AR autoradiograph films (Kodak) were quantified with an LKB Ultroscan XL enhancer laser densitometer (Pharmacia LKB Biotechnologies). To check for consistency of measurements, total proteins were compared to estimates made with bicinchoninic acid and Coomassie Plus Protein Assay reagents (Pierce), and antigen detection was compared to immunoblots analyzed with a Storm 820 Phosphorimage Analyzer and the Vistra Systems Western Blot kit (Molecular Dynamics). Units representing the percent maximum signal of the desired protein band were compiled for FtsZ and an internal standard, NusA, detected with anti-NusA serum (59). FtsZ values from several measurements were normalized against their respective NusA values, adjusted for their respective loading volumes and exposure times, and finally summed to calculate an average FtsZ value for each strain.
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RESULTS |
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Suppression correlates with the Ntr
phenotype.
While exploring the functions of newly identified genes of the
rpoN operon (41), we discovered that mutations
which disrupt the rpoN gene (41) allowed
ftsZ84 strains to grow on LB agar at 42°C. Examination of
these suppressor mutations by complementation tests showed that plasmid
or lambda clones that replenish only the wild-type rpoN gene
could abolish suppression (Table 2). Thus, loss of RNA polymerase sigma factor
54 appeared to
be the causative defect for suppression. From this information, the
mechanism of ftsZ84 suppression could be direct or indirect;
attributable either directly to an inability to induce promoters under
54 control or indirectly to the physiological state of
diminished glutamine metabolism, since the loss of
54
activity creates both deficiencies. The relevance of each effect for
suppression was tested as described next.
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, and those causing glutamine auxotrophy, called
Gln
(for reviews of nitrogen regulation see references
28, 31, 32, and 45). Table
3 lists the regulatory genes and their protein products that are commonly known to be important for general nitrogen control and ammonium assimilation in E. coli. The
Gln and Ntr phenotypes of strains having mutations in these genes are
tabulated alongside findings of whether or not they suppressed ftsZ84. As shown, four single mutations, glnD,
glnF, glnG, and glnL, allowed
high-temperature growth with significant reductions in cell
filamentation. Examination of data from all of these strains revealed
that suppression generally correlated with the Ntr
phenotype and not with the Gln
phenotype (Table 3). The
only exceptions to this correlation were strains containing
gltBDF operon mutations. We reasoned that this apparent
inconsistency may reflect the unusual physiology of gltBDF
operon mutants. Such mutants possess substantially greater-than-normal levels of free glutamine due to the absence of glutamate synthase activity, which consumes glutamine in making glutamate (45). By combining either of the two different gltBDF operon
mutations with the glnG null allele, we observed that
suppression of ftsZ84 by glnG was reversed
genetically (Table 3, footnote e; compare BSP742 with
BSP785). Since such strains are still defective for Ntr regulation,
these findings indicated that suppression of filamentation likely
relates to glutamine limitation as a consequence of the loss of general
nitrogen control. This disfavored the possibility of a more direct
effect on FtsZ transcription by
54. Interestingly, loss
of glutamine synthetase (glnA), which is the only
biosynthetic enzyme for glutamine in E. coli, does not suppress, and is itself unimportant for suppression by the
glnF or glnD mutation (Table 3). It is not well
understood how cells lacking both glutamine synthetase and
54-dependent activation of the Ntr pathway survive on
autoclaved LB medium, which contains no detectable free glutamine. The
absence of free glutamine in our LB medium was verified by
physiological high-pressure liquid chromatography (HPLC) analysis (data
not shown). The survival of this mutant and certain other
Ntr
mutants on LB medium, however, was found to require
active RelA, suggesting a role for RelA in glutamine metabolism, as
discussed below.
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Suppression of ftsZ84 by Ntr
mutants is
blocked by externally added glutamine.
It is known that LB medium
contains no free glutamine due to deamidation that occurs during
autoclaving (49). We confirmed this absence by physiological
HPLC (16a). glnA mutants presumably acquire
glutamine from glutamine-containing oligopeptides in the medium. The
hypothesis of glutamine limitation for the Ntr
mutants
was first tested by enriching LB medium separately with each of the 20 standard amino acids. The added presence of glutamine reversed
suppression by all four mutations, as exemplified for the
glnF mutation in Table 4.
These mutants were not identically sensitive, however, since the
glnF strain required an amount of glutamine (0.25%
[wt/vol]) five times as great as that required by the other mutants
to completely restore the high-temperature lethality of
ftsZ84. No other amino acid fully blocked suppression, although leucine, glycine, and methionine produced mild effects (Table
4). Since a return to glutamine sufficiency reversed suppression in all
of the suppressor mutants, the physiological state created by glutamine
limitation seemed to be important for their suppression of
ftsZ84 heat sensitivity.
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Dependence of ppGpp for suppression of ftsZ84. Because ppGpp is a global regulator induced by nutrient restriction, we tested whether suppression is affected by changes in the level of ppGpp. This association was first explored by artificially increasing ppGpp with plasmid pALS10. The RelA protein produced from this plasmid is unregulated and gratuitously expresses ppGpp in direct relation to its transcription from a tac promoter (53). Induction of RelA from this plasmid allowed high-temperature growth of all of the ftsZ84 strains tested (Table 5). This indicated that all types of suppression may resemble or be identical to effects caused by the induction of ppGpp.
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and Ntr
), the
glnL relA strain (Gln+ Ntr
) did
grow on plain LB at all of the temperatures tested. We reasoned that
this was because the glnL mutant has slightly higher levels of internal glutamine (17, 46). The glnL mutation
was therefore used to test the importance of relA. While the
ftsZ84 glnL strain grew at 42°C, the congenic
relA derivative did not (Table 5). We interpret this to mean
that suppression of ftsZ84 by glnL depends on
relA activity, as predicted. This conclusion presumably
extends to the other Ntr
mutants, although this was not
tested due to difficulties in constructing the desired multiply
defective strains. These data show that increased ppGpp suppresses
ftsZ84 and concur with the idea that RelA-directed ppGpp
synthesis is of primary importance for ftsZ84 suppression by
mutations conferring the Ntr
phenotype.
Finally, we employed mutant forms of sigma factor
70,
rpoD* (Table 4; see Table 7), that constitutively convert
RNA polymerase into a form that behaves as though it had been modified
by ppGpp (26). These mutations also suppressed
ftsZ84 and could do so in the complete absence of cellular
ppGpp, i.e., in relA spoT double null mutants (Table 5).
This indicated that suppression is caused by an effect generated
through ppGpp on RNA polymerase and not by ppGpp itself.
Suppression of ftsZ84 by a high salt concentration also depends on RelA function. The ftsZ84 relA strain was used to explore the necessity of ppGpp for a different but familiar kind of suppression, i.e., that of salt repair (47). The presence of additional NaCl in the LB medium suppressed the filamentation of our parental ftsZ84 strain but not that of its derivative which lacks RelA activity (Table 6). Furthermore, a requirement for RelA activity was also observed for suppression by (NH4)2SO4 and NH4Cl salts, indicating that the connection between suppression and relA is not limited to sodium salts (52). It is known that high sodium chloride levels are associated with accumulation of ppGpp (24).
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Suppression does not involve some other known effectors of
ftsZ.
To explore the possible involvement of well-known
effectors of the FtsZ protein, ftsZ84 strains were
constructed that combined either glnL, glnD, or
glnF with a mutation of sdiA, sulA,
rcsB, rcsF, or rpoS. Perhaps of most
relevance is our finding that suppression by glnL is
unaffected by a null mutation of rpoS since strain BSP690
(ftsZ84 glnL rpoS) grew at 42°C as well as parental strain BSP666 (ftsZ84 glnL). Importantly, loss of the
s transcription factor did not alter suppression by a
70 (rpoD*) mutation (strain BSP815) or by a
high salt concentration (data not shown). The added disruption of
either sdiA, sulA, rcsB, or
rcsF had no effect on the suppression of ftsZ84
by glnF. A potential involvement of the leucine regulatory
protein Lrp was tested because we had seen a slight effect of added
leucine on suppression (Table 4). Since an lrp glnF ftsZ84
strain grew well at all temperatures and an lrp ftsZ84
strain was still heat sensitive, Lrp appears to be unimportant for this
kind of suppression by ppGpp on LB medium. Surprisingly, however, the
ftsZ84 lrp strain acquired a heat-sensitive phenotype on M63
minimal salts plus glucose medium where none exists for the parental
ftsZ84 (Lrp+) strain.
Suppression causes changes in transcription of the ftsZ
operon.
Since filamentation caused by the ftsZ84 allele
is known to be suppressed by its own overexpression, we tested whether
the glnF mutation or artificially high RelA activity could
alter patterns of transcription within the ftsQAZ operon.
Transcription of two sets of ftsQAZ operon promoters was
measured by using reporter plasmids developed and tested elsewhere
(66). These low-copy-number plasmids separately place
lacZ under the transcriptional control of ftsZ
promoters Zp2, Zp3, and Zp4 (herein called the pZ promoters) or
ftsQ promoters Qp1 and Qp2 (herein called the pQ promoters). Contrary to what we expected, the activity of the pQ set of promoters was two- to threefold lower in the glnF strain than in the
wild-type strain (Fig. 1A).
glnD, glnG, and glnL mutants produced
similar effects (data not shown). The effects on ftsZ operon
transcription caused by artificially elevated levels of ppGpp were
measured by using a compatible plasmid that overproduces RelA' as the
genetic condition of suppression. As was seen for the Ntr
mutations, constitutively high RelA activity also reduced transcription from the pQ promoters about twofold (Fig. 1B). Plasmids that separately contained lacZ fusions to either Qp1 or Qp2 (pCX39 and
pCX40, respectively) were tested, and both had decreased
-galactosidase activity in the glnF mutant compared to
the wild type (data not shown). In contrast, no consistent change in
activity of the pZ set of promoters was observed that was common to
both conditions of suppression (data not shown). The activities of
protein and operon fusions to the Zp2 promoter carried on
BBP133 and
BBP134, respectively, did not differ between the wild-type and
glnF genetic backgrounds (data not shown). This suggested
that any change in FtsZ activity caused by suppression is not due to
alterations at the level of ftsZ translation and is not
observable by using an isolated pZ promoter. Thus, induction of RelA
activity correlates with a two- or threefold decrease in the activity
of the Qp1 and Qp2 promoters.
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Suppression correlates with increased levels of FtsZ84 protein. To estimate possible changes in the amount of FtsZ protein that may accompany suppression, the steady-state level of FtsZ84 protein in these strains was measured by immunoblot analysis of whole-cell extracts. The amount of FtsZ84 protein was measured relative to that of an internal standard, NusA. A weighted average among several different loadings and measurements was calculated so as to minimize variations due to sample handling and antigen detection and finally compared between strains. The amount of FtsZ84 relative to the total amount of protein was greater in both of the suppressed strains than in their respective parental strains (Table 7). The glnF mutant strain had 3.9 times more FtsZ84 than the heat-sensitive parent, and the multicopy relA' strain had 3.4 times more FtsZ84 protein. It appears, then, that the operative effect of suppression by ppGpp is an increase in the steady-state amount of FtsZ84 protein.
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E. coli requires ppGpp to grow on LB medium in the
absence of a functional Ntr system.
While investigating the role
of RelA in the suppression of filamentation, we found that our
ftsZ84 strains that lack ppGpp and genes for nitrogen
regulation (Ntr
) do not grow in LB medium. To further
explore this effect, we constructed Ntr
ftsZ+ derivatives of strains having different
levels of ppGpp and tested them for growth on various media. The growth
of a relA glnF double mutant strain (BSP816) on LB medium,
was severely affected compared to that of its
relA+ parental strain (BSP396), while a
relA glnD strain (BSP810) was completely nonviable on LB
medium (Table 8). Furthermore, the ppGpp0 state rendered both Ntr
strains
(BSP821 and BSP822) fully nonviable on LB medium. The lethality of this
LB effect was relieved genetically by the rpoD* mutations
(Table 8) or physiologically by addition of glutamine to the medium
(Table 8). Therefore, ppGpp appears to be critical for fulfillment of
the glutamine requirement of Ntr
cells grown on LB
medium. This introduces the possibility of a ppGpp-dependent survival
mechanism for making glutamine available from LB medium that functions
independently of
54-dependent nitrogen regulation.
Interestingly, these relA Ntr
(ftsZ+) strains filamented soon after being
transferred from LBQ medium to plain LB medium. However, neither
septation nor survival was restored by artificially increasing
ftsZ expression (data not shown). This suggests that this
effect is not identical to the ppGpp effect on ftsZ under
investigation or may involve an earlier stage of septation. In contrast
to the glnF and glnD derivatives, a glnA
relA strain, which is simply defective for glutamine synthesis (Gln
Ntr+), grew well on LB medium. Since the
glnA strain is not stressed on LB medium, as surmised from
its inability to suppress ftsZ84, while Ntr
mutants are, it stands to reason that the Ntr system functions in LB
medium to provide glutamine in spite of the conventional understanding
that the Ntr system is not active in this regard during growth in LB
medium (46). From our data, we propose that both the Ntr
regulon and an undefined ppGpp-dependent pathway facilitate the
supplying of glutamine from a source(s) in LB medium other than de novo
synthesis or the transport of free glutamine, which is absent from
standard LB medium.
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DISCUSSION |
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This study demonstrates that an aspect of septation directed by FtsZ is influenced positively by nutritional stress and that the mechanism of this effect likely depends on the synthesis of ppGpp by RelA. We propose that ppGpp may effect suppression of FtsZ84 by increasing the total activity of the protein through an altered pattern of transcription, and we offer the following arguments in support of this hypothesis.
Suppression of heat sensitivity on LB medium by loss of nitrogen
control, i.e., the Ntr
phenotypic condition, correlates
with an increased steady-state concentration of the FtsZ84 protein
(Table 7). This concurs with other findings that the cellular amount of
FtsZ is normally rate limiting (38, 67) and that an increase
of as little as a 1.5-fold can suppress heat-sensitive filamentation of
ftsZ84 (66). It is worth noting here that
suppression of filamentation by ppGpp appears to be allele specific
since the Ntr
mutants did not abate heat sensitivity
caused by the ftsZ26 allele, which cannot suppress itself by
increased copy number (5) or by the ftsA12
mutation (data not shown). We postulate that the increase in FtsZ
protein that accompanies loss of nitrogen control probably involves an
elevated basal level of the nutrient stress signal ppGpp for the
following reasons. The glnL mutant requires RelA to suppress
ftsZ84 (Table 5), an abundance of glutamine annuls
suppression by the nitrogen control mutations (Tables 2 and 4), and
genetic conditions that overproduce RelA or mimic the ppGpp-induced
state (rpoD*) suppress ftsZ84 (Table 5). The requirement of RelA for salt repair shows separately that the relief of
ftsZ84 heat sensitivity by ppGpp operates there as well (Table 6).
A reasonable mechanism for RelA-dependent suppression would invoke changes in the transcription of ftsZ due to the known effect of ppGpp on RNA polymerase (8, 26). Indeed, the restoration of high-temperature growth of ftsZ84 strains by SdiA correlates with altered transcription and increased FtsZ protein levels (66). However, the mechanism of SdiA suppression is not similar to that described here since ppGpp decreases expression at both promoters Qp1 and Qp2 (Fig. 1), while SdiA activates the Qp2 promoter. Furthermore, SdiA is not needed for suppression by ppGpp. We note that there is no measured effect of ppGpp on transcription from the downstream pZ promoters or on translation of FtsZ.
We offer two possible scenarios of suppression that might accommodate
the decrease in promoter activity upstream of ftsZ84. If the
pZ promoters adjacent to ftsZ function independently of the
pQ promoters upstream, then suppression might be the consequence of an
increase in the ratio of FtsZ to FtsA and/or FtsQ. This scenario alone,
however, does not explain why the absolute amount of FtsZ84 protein
increases upon suppression. Alternatively, the phenomenon of promoter
occlusion may account for the effect of decreased promoter activity, as
well as that of increased FtsZ84 protein levels. Promoter occlusion is
the inhibitory effect that elongating RNA polymerase molecules have
upon transcription initiation at relatively weaker promoters
downstream. This was originally suggested with respect to the
activities of multiple trp operon promoters (25)
and substantiated with respect to the lambda pL
promoter and nearby pGal promoters (1). Promoter occlusion is a well-known phenomenon often called transcription interference at
eukaryotic promoters (18, 43). By comparison, then, the predominant transcription arising early in the ftsQAZ operon
may inhibit the activity of promoters nearer to ftsZ. Thus,
downstream promoters may be activated by reducing promoter activity
upstream. A corollary of this model is that translation is more
efficient from mRNA originating at the downstream promoter
(1). The predicted activation of the reporter-linked
promoters on prophages
BBP133 and
BBP134 would not be detectable
in these experiments since they do not contain the upstream promoters
in cis. Plasmids carrying reporter fusions that do contain
both sets of promoters in cis (68) are not stable
under the genetic conditions tested here. Perhaps such constructs
adversely affect the cell by introducing extra copies of
ftsQ and ftsA. If promoter occlusion explains ftsZ84 suppression by decreased activity of promoters Qp1
and Qp2, then how can it agree with SdiA suppression by increased activity of promoter Qp2? We predict that although activation of Qp2
would further occlude pZ, the increase in total ftsZ
translation from an increased amount of the longer transcripts must
allow sufficient FtsZ expression. These models do not necessarily
exclude one another and, in fact, there are probably many ways to
activate FtsZ. For example, a cis-dependent model for
regulation of the activities of ftsQAZ operon promoters
based on DNA-looping and putative multiple operator sites has also been
proposed (15). Early on, we had considered the possibility
of a direct effect by ppGpp on the GTPase activity of FtsZ, but this
idea was dismissed by the finding that the rpoD* mutation
suppresses ftsZ84 in the complete absence of ppGpp (Table
5). Thus, it appears that the essence of suppression by ppGpp may be an
increase in the total activity of FtsZ84 protein through
transcriptional regulation. These data, however, do not distinguish
between a direct and an indirect effect of ppGpp on ftsZ
transcription.
Connections between ppGpp and septation have been suggested previously.
Studies on the first ppGpp0 strains, which filament upon
nutritional downshift (68), provided the first direct
indication that ppGpp may normally stimulate septation. Gervais et al.
mentioned unpublished data showing that multiple copies of
relA suppress ftsZ84 (21). ppGpp has
been shown to help confer resistance to the cell wall inhibitor
mecillinam via several different mutations (62-64). In
these examples, it is proposed that FtsZ levels could be especially
limiting due to the abnormally wide diameter of these cells, and ppGpp
may exert a suppressive effect by increasing the total amount of FtsZ. A similar explanation is given for suppression by ppGpp of
heat-sensitive filamentation caused by a mutant of the
subunit of
RNA polymerase (61). Perhaps this rpoB mutation
affects the same step in transcription as the rpoD* mutants
used here, except that it creates an RNA polymerase that is less
responsive to ppGpp. Another rpoB mutant appears to resemble
rpoD* and increases expression of ftsZ
(7). The work reported here concurs with these findings and
is the first direct evidence that RelA-mediated synthesis of ppGpp
suppresses the ftsZ84 mutant on LB medium. Other indications
of a role for ppGpp have come from its effect on growth rate control.
It has been known for some time that E. coli cell size
decreases under poorer growth conditions. In concordance with this,
FtsZ expression has been shown to vary inversely with growth (2,
16, 48) and, by inference, with ppGpp, although a direct
connection has not been shown until now. Thus, increased ppGpp
correlates with increased FtsZ protein levels in E. coli
cultures that enter stationary growth (2, 19, 56) or are
otherwise under nutritional stress (54).
Altogether, the data presented here may elucidate some previously
unexplained phenomena. One example is the suppression of ftsZ84 by multiple copies of the capsule regulators
rcsB and rcsF (20, 21). Since
suppression involved high-copy plasmids containing both an intact
rcs regulator gene and its
54 promoter, it is
plausible that the plasmids may titrate a finite and constitutive
supply of
54 (41), thus leading to glutamine
insufficiency, elevated ppGpp, and, hence suppression. The
physiological suppression of ftsZ84 by high-osmotic-strength
medium (Table 6) probably operates partly through a similar mechanism,
since osmotic stress induces ppGpp (24). Interestingly, salt
and ppGpp act oppositely on the isomerization reaction that converts
the RNA polymerase holoenzyme into the elongating conformation at the
rrn promoters of E. coli (22, 37). In
this regard, it would be informative to measure the activities of
ftsQAZ promoters as a function of medium osmolarity.
During this study, we found evidence that Ntr regulation is important
for supplying glutamine in cells grown in LB medium since the absence
of Ntr activity requires the nutrient stress factor ppGpp or enrichment
of the LB medium with glutamine. This also reveals that ppGpp-dependent
gene induction comprises an auxiliary path for supplying glutamine on
LB medium. Peptide-bound glutamine can be less susceptible than free
glutamine to nonenzymatic deamidation under harsh conditions (e.g.,
autoclaving) (49), and so the source of glutamine in LB made
accessible by the ppGpp pathway may derive from the abundant supply of
oligopeptides. Specific mutants which bypass the ppGpp requirement of
this peptide transport and degradation pathway might be found by using
combinations of Ntr
glnA relA strains and
selecting for growth on LB medium.
These findings interrelate nitrogen control and cell division by a
global signal of nutrient stress, ppGpp, and begin to explain some of
the previously observed difficulty and variability encountered in
working with Ntr
strains, as well as with
ftsZ84 strains. While glnF, glnG,
glnD, glnL, and rpoD* are the first
mutations reported to suppress ftsZ84 on LB medium, the
detailed mechanism of the ppGpp effect on FtsZ is not readily apparent
and the promoter occlusion model proposed here awaits more direct
experimental examination.
| |
ACKNOWLEDGMENTS |
|---|
We are thankful to the sources of strains, lambda phages, antisera, and plasmids listed in Table 1. We are particularly indebted to the following people for kindly responding to numerous requests and for helpful discussions: L. Reitzer, J. Garcia-Lara, L. Rothfield, J. Hernandez, D. Gentry, D. Vinella, and M. Cashel. We sincerely thank R. Dinterman for generously performing the amino acid analysis of LB medium by physiological HPLC.
This research was sponsored by the National Cancer Institute under contract with ABL.
| |
FOOTNOTES |
|---|
* Corresponding author. Mailing address: Molecular Control and Genetics, ABL-Basic Research Program, NCI-Frederick Cancer Research and Development Center, Frederick, MD 21702. Phone: (301) 846-5940. Fax: (301) 846-6988. E-mail: court{at}ncifcrf.gov.
Present address: Laboratory of Biochemical Genetics, National
Institute of Mental Health, Bethesda, MD 20892.
| |
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