J Bacteriol, March 1998, p. 1460-1465, Vol. 180, No. 6
0021-9193/98/$04.00+0
Copyright © 1998, American Society for Microbiology. All rights reserved.
Unusual Organization of the Genes Coding for HydSL, the Stable
[NiFe]Hydrogenase in the Photosynthetic Bacterium
Thiocapsa roseopersicina BBS
Gabor
Rakhely,1
Annette
Colbeau,2
Jerome
Garin,3
Paulette M.
Vignais,2 and
Kornel
L.
Kovacs1,4,*
Institute of Biophysics, Biological Research
Center, Hungarian Academy of Sciences,1 and
Department of Biotechnology, A. József University of
Szeged,4 H-6701 Szeged, Hungary,
BBSI/DBMS, Biochimie et Biophysique des Systemes Integres
(CEA/CNRS UMR 314),2 and
Laboratoire
de Chimie des Proteines, DBMS,3
CEA/Grenoble, F-38054 Grenoble, Cedex 9, France
Received 24 September 1997/Accepted 10 January 1998
 |
ABSTRACT |
The characterization of a hyd gene cluster encoding the
stable, bidirectional [NiFe]hydrogenase 1 enzyme in Thiocapsa
roseopersicina BBS, a purple sulfur photosynthetic bacterium
belonging to the family Chromatiaceae, is presented. The
heterodimeric hydrogenase 1 had been purified to homogeneity and
thoroughly characterized (K. L. Kovacs et al., J. Biol.
Chem. 266:947-951, 1991; C. Bagyinka et al., J. Am. Chem. Soc.
115:3567-3585, 1993). As an unusual feature, a 1,979-bp
intergenic sequence (IS) separates the structural genes
hydS and hydL, which encode the small and the
large subunits, respectively. This IS harbors two sequential open
reading frames (ORFs) which may code for electron transfer proteins
ISP1 and ISP2. ISP1 and ISP2 are homologous to ORF5 and ORF6 in the
hmc operon, coding for a transmembrane electron transfer
complex in Desulfovibrio vulgaris. Other accessory proteins
are not found immediately downstream or upstream of hydSL.
A hup gene cluster coding for a typical hydrogen
uptake [NiFe]hydrogenase in T. roseopersicina was
reported earlier (A. Colbeau et al. Gene 140:25-31, 1994). The deduced
amino acid sequences of the two small (hupS and
hydS) and large subunit (hupL and
hydL) sequences share 46 and 58% identity, respectively.
The hup and hyd genes differ in the arrangement of accessory genes, and the genes encoding the two enzymes are located
at least 15 kb apart on the chromosome. Both hydrogenases are
associated with the photosynthetic membrane. A stable and an
unstable hydrogenase activity can be detected in cells grown under nitrogen-fixing conditions; the latter activity is missing in
cells supplied with ammonia as the nitrogen source. The apparently constitutive and stable activity corresponds to hydrogenase 1, coded by
hydSL, and the inducible and unstable second hydrogenase may be the product of the hup gene cluster.
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INTRODUCTION |
Hydrogenases are widely spread
metalloenzymes in bacteria catalyzing the uptake or production of
molecular hydrogen. Hydrogenases have been classified into two groups
on the basis of their metal content at the active center: Fe-only
hydrogenases, and [NiFe]hydrogenases (some [NiFe]hydrogenases
contain also selenium) (2, 14, 30, 38). Hydrogenases are
located in the cytoplasm, in the periplasm, or in the membrane of the
various bacteria.
Most microorganisms apparently contain a designated hydrogenase for the
diverse physiological tasks. Therefore, for a number of species more
than one hydrogenase has been described (for reviews, see references
14, 17, and 38). The hydrogenases
may differ in electron carrier specificity, in subcellular
localization, and in regulation of expression.
Several purple and green photosynthetic bacteria have been reported to
contain hydrogenase, and all known examples belong to the typical
heterodimer [NiFe]hydrogenase family (for a recent review, see
reference 37). In spite of the metabolic versatility of these organisms, only one membrane-associated enzyme has been reported for Rhodobacter capsulatus (10, 11, 35)
and for Chromatium vinosum (reviewed in reference
2). R. rubrum also contains a
membrane-bound [NiFe]hydrogenase (1), although recent observations (16, 19) are compatible with the occurrence of more than one distinct hydrogenases in this organism.
In Thiocapsa roseopersicina BBS, a remarkably stable
hydrogenase activity has been found (18) and characterized
(20-22, 24). In this report, we present molecular biology
evidence that in the photosynthetic bacterium T. roseopersicina BBS there are at least two [NiFe]hydrogenases,
encoded by the hup and hyd gene clusters. The two
enzymes differ in sequence, gene organization, and regulation of
biosynthesis. The genes encoding the two enzymes are located at
distinct sites on the chromosome, and two hydrogenase activities of
dissimilar stability properties can be separated from cells containing
active nitrogenase. The two hydrogenases of similar subunit composition
and amino acid sequence but dissimilar stability properties offer a
unique possibility for studying molecular structural parameters that
stabilize proteins in a single bacterium.
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MATERIALS AND METHODS |
Growth conditions.
T. roseopersicina BBS, obtained
originally from E. N. Kondratieva (Moscow State
University, Moscow, Russia), was grown at 28 to 30°C under continuous
illumination from a bank of light bulbs for 2 to 4 days in
Pfennig's mineral medium containing either 0.1% NH4Cl
or 0.1% sodium glutamate as the nitrogen source (29).
Determination of amino acid sequences from the stable
hydrogenase.
Hydrogenase (hydrogenase 1 [see Results and
Discussion]) was purified from ammonia-grown cell paste as described
by Kovacs et al. (20), from the soluble fraction following
cell sonication, or from the Triton X-100-solubilized membrane
fraction. The pure protein was identified by activity staining of
non-heat-denatured samples after sodium dodecyl sulfate-polyacrylamide
gel electrophoresis (24) and by reaction with antibodies
raised against various [NiFe]hydrogenases (22). The active
hydrogenase band was recovered from the crushed gel slices by soaking
in 20 mM sodium phosphate buffer (pH 7.0). The large and small subunits
of the pure hydrogenase 1 were isolated after separation of the
completely heat-denatured enzyme on a second sodium dodecyl
sulfate-polyacrylamide gel. For determination of N-terminal amino acid
sequences, the protein bands were transferred onto Problott (Applied
Biosystems) membranes. The isolated subunits were treated with
aspartate endopeptidase (sequencing grade; Boehringer), and internal
peptides were analyzed as described by Toussaint et al.
(36).
DNA manipulations.
Preparation of total DNA and plasmids and
cloning were done as described by Colbeau et al. (12) or
according to general practice (32).
PCR conditions.
Several oligonucleotides were designed
(Table 1) by using the determined
hydrogenase 1 peptide sequences and the codon usage of T. roseopersicina BBS (12). PCR was performed in a
thermal cycler (Techne/Gene E), using an annealing temperature of 50 to 55°C and an elongation step at 72°C. The products were analyzed in
1% agarose gels or in 5% acrylamide gels (32), typically after 25 PCR cycles. In most cases, several PCR products were obtained.
Fragments of the expected sizes were isolated from the gel and cloned
into the cloning vectors (e.g., pBluescript [Stratagene]). DNA
sequencing was done manually by the dideoxy-chain termination method
(33) with a Sequenase version 2.0 kit (U.S. Biochemicals) or
by automatic sequencing (Applied Biosystems model 373 Stretch DNA
sequencer).
Hybridization conditions.
Total genomic DNA samples of
T. roseopersicina BBS digested with restriction enzymes were
separated in a 1.0% agarose gel in TAE buffer (32). DNA
fragments were denatured and then transferred onto a Hybond nylon
membrane (Amersham) by capillary transfer or in a semidry vacuum
apparatus (Pharmacia-LKB) in the presence of 20× SSC (1× SSC is 0.15 M NaCl plus 0.015 M sodium citrate) (32). Southern or colony
hybridization experiments were carried out as recommended by the
manufacturer (Boehringer).
Separation of hydrogenase activities.
Photosynthetically
grown T. roseopersicina BBS culture (2 liters) was harvested
at the late exponential phase by centrifugation. The cell paste
was broken by sonication (Branson Sonifier) on ice. Almost all
hydrogenase 1 activity can be detached from the membrane
(20); however, it was not known how strongly hydrogenase 2 was associated with the membrane. Therefore, various solubilization methods were tested. The total cell extract or the Triton
X-100-solubilized membrane fraction separated after ultracentrifugation
(100,000 × g, 45 min, 15°C) was immediately applied
onto a DEAE-cellulose (DE52; Whatman) column (3.5 by 12 cm) and washed
with 20 mM Tris-HCl buffer containing 20 mM sodium phosphate (pH 8.0).
The column was washed with 1 column volume of the loading buffer, and
after elution of the loosely bound protein fraction with 40 mM
phosphate in the same buffer (3 column volumes), a linear
phosphate gradient of between 40 and 500 mM (5 column
volumes) was applied. The conductivity and hydrogen-evolving activity
(4) of the collected fractions were determined immediately
after elution and following overnight incubation under air at 4°C.
All of these operations were done under air.
Nucleotide sequence.
The 7,873-bp DNA sequence of T. roseopersicina determined in this study has been
deposited at GenBank under accession no. AF002817.
 |
RESULTS AND DISCUSSION |
Comparison of the purified hydrogenase 1, HydSL, with the predicted
products of the hupSL genes.
A gene cluster, encoding
the hupSLC hydrogenase structural genes and various
hydrogenase accessory genes, had been identified in T. roseopersicina BBS by hybridization with the
homologous hup genes from R. capsulatus and
sequenced (12). The N-terminal amino acid sequences of the
predicted HupS and HupL structural gene products differed from the
subunits of the protein routinely isolated based on its hydrogenase
activity (12, 24). To determine whether the difference
originated in protein modification during purification, in this study
we used hydrogenase samples obtained from various cell fractions of
cultures grown in the presence of ammonia (see Materials and Methods)
to redetermine the N-terminal amino acid sequences. The N termini of
the hydrogenase subunits from these preparations were identical and
differed from those predicted for HupS and HupL. This was also the case
for an internal peptide sequence determined for each subunit. The
results strongly suggested the occurrence of at least two hydrogenases
in T. roseopersicina BBS.
Identification of hydSL genes.
Oligonucleotides
corresponding to the N-terminal and the internal peptide sequences of
the large subunit of hydrogenase 1 yielded PCR products ACRG4 and TSUP2
(Fig. 1). PCR using ACX12 and ACX14
followed by a second PCR on the product with ACX12 and ACX13 gave the
0.9-kb ACRG4 fragment (oligonucleotide sequences are listed in Table
1).

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FIG. 1.
Cloning, restriction map, and arrangement of
hyd genes. The locations of PCR primer sequences, designed
on the basis of the N-terminal and internal peptide sequences, are
indicated. The principal PCR products have been cloned as pTSUP and
pACRG4 for sequencing. The positive cosmid was identified by
hybridization with the PCR product ACRG4. This cosmid insert was
digested with BamHI and PstI, and the 5-kb
BamHI and 4.5-kb PstI fragments, giving positive
hybridization, were subcloned into the corresponding sites of
pBluescribe vector (Stratagene), yielding clones pTSH2/8 and pTSH4/5,
respectively. The overlapping clones were further subcloned into
pBluescribe and pBluescriptKS and -SK and then sequenced by using
specific synthetic primers and/or T3 and T7 primers. The
hydS and hydL genes code for the small and large
subunits, respectively, of hydrogenase 1. IS is the 2-kb IS harboring
two ORFs, isp1 and isp2. Abbreviations for
restriction endonucleases: BHI, BamHI; BHII,
BssHII; BII, BglII; BXI, BstXI; E,
EcoRI; H, HincII; P, PstI; S,
SphI; X, XhoI.
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The ACRG4 PCR product was identified by the following criteria. (i) The
main PCR product was a fragment of approximately 0.9 kb, the size
expected from the distance between the N-terminal and internal
peptides. (ii) The translated amino acid sequence of the cloned PCR
product matched exactly the known hydrogenase 1 peptide sequences
adjacent to the amino acids coded by the PCR primers. The overall DNA
sequence of the PCR product showed homology with other
[NiFe]hydrogenase large-subunit sequences. (iii) A highly specific
Southern hybridization response, showing only one strongly hybridizing
band in the T. roseopersicina genome, was
obtained with ACRG4 (data not shown). These bands did not correspond to
hupSL (12).
Cloning and sequencing of hydSL.
Positive clones have
been identified in a cosmid library (12) of T. roseopersicina by colony hybridization with
labeled ACRG4 or TSUP2. The arrangement of the corresponding
hydrogenase genes is summarized in Fig. 1.
The hydS and hydL genes encode proteins of 370 and 577 amino acids, respectively, which are processed to form the
mature HydS (34,062-Da) and HydL (63,892-Da) proteins. These data are
in good agreement with the stable hydrogenase 1 subunit sizes
determined by denaturating electrophoresis (34 and 64 kDa
[24]). The translated HydS and HydL amino acid
sequences and the N termini and internal peptides from hydrogenase 1 subunits are in perfect match.
We found significant homology between HydSL and other
[NiFe]hydrogenase coding sequences, including HupSL of
T. roseopersicina. The HupS-HydS and
HupL-HydL amino acid sequence identities are 46 and 58%, respectively.
Compared with the translated HupSL sequences, large blocks
of identical amino acids characterize the HupL and HydL homologies, whereas identity is restricted to short amino acid sequences within the
small subunit outside the conserved motifs. The positions of cysteine
residues and those of recognized conserved amino acid motifs for class
I [NiFe]hydrogenases (39) are well preserved both in HupSL
and in HydSL. Protein database search revealed that the HydL subunit
shows strongest homology with the corresponding subunit sequences of
Bradyrhizobium japonicum (34), R. capsulatus (26), Azotobacter chroococcum
(15), Desulfovibrio gigas (27), and
D. vulgaris (13). These results corroborate
earlier immunological findings (22).
At the N terminus of HydS, a typical signal peptide sequence,
containing the consensus RRXFXK sequence motif (38), is
found. The putative signal peptidase cleavage site is alanine. The
presence of the signal peptide coding region at the 5' end of
hydS, and a similar sequence in hupS
(12), suggests that both hydrogenases are exported into or
through the photosynthetic membrane.
Immediately upstream and downstream from the gene coding for the large
subunit, a set of accessory genes are located in a typical
[NiFe]hydrogenase gene cluster (17, 37). Apparently, the
hyd genes in T. roseopersicina
BBS represent an exception, as no sequence homologous with any
hydrogenase accessory genes has been detected within 1 kb upstream and
2 kb downstream from hydSL. The region downstream from
hydSL contains sequences characteristic of Rho-independent
terminators (8). Therefore, genes coding for products
necessary for the maturation of hydrogenase 1 of T. roseopersicina BBS are not organized as in other
[NiFe]hydrogenase gene clusters. Either the accessory genes are
located elsewhere in the genome or the accessory genes around
hupSL participate in the biosynthesis of HydSL.
The 2-kb IS between hydS and hydL.
hydS and hydL are separated by a 1,979-bp
intergenic sequence (IS). Such an arrangement of [NiFe]hydrogenase
structural genes is rather unusual. In cyanobacteria, a DNA fragment is
intercalated inside the hupL gene. This element plays a
significant role in heterocyst differentiation (9). The
structural gene cluster coding for one of the hydrogenase isoenzymes in
Escherichia coli (28) is the only known example
where the two [NiFe]hydrogenase structural genes are separated. In
this case, the hybAB genes are reported to be intercalated
between the structural genes hybO and hybC
(7, 28).
Two open reading frames (ORFs) which may code for the ISP1 and ISP2
protein products have been identified within the IS fragment (Fig.
2). ISP1 contains five putative
membrane-spanning domains and a cytochrome heme-binding site, it
shows 28% sequence identity to the predicted product of ORF5,
found in D. vulgaris as part of a large transmembrane
electron transport protein cluster encoded by the hmc operon
(31). Adjacent to two of the transmembrane domains there are
at least three amino acid residues with strong positive charge which
may anchor the protein at the interior surface of the membrane. ISP2 is
unlikely an integral membrane protein, it contains two ferredoxin-type
iron-sulfur cluster-binding sites, as ORF6 does in the same
Desulfovibrio hmc operon, and there is 26% amino acid
sequence identity between the two putative proteins. Genes showing
significant homology to ORF5 and ORF6 of the Desulfovibrio hmc operon have been found in methanogens, and the gene products have been identified recently as a b-type cytochrome
(MbhdrD) and heterodisulfide reductase (MbhdrE),
(25). Interestingly, homologous genes have also been
discovered in the dsr locus of C. vinosum D
(DSMZ180), which encodes enzymes participating in sulfur metabolism
(12a). The presence of the two ORFs intercalated between the
hydrogenase 1 structural genes of T. roseopersicina BBS is intriguing in light of the
involvement of homologous gene products in the sulfur metabolism of
several phylogenetically distant species. Preliminary Northern blot
analysis indicates that the IS region is transcribed together with the
hydSL hydrogenase structural genes (data not shown). It is
also noted that although hybAB in E. coli is
about the same size as the IS in T. roseopersicina, the homology between ISP1 of
T. roseopersicina and HybB of E. coli does not seem significant outside the heme-binding motif, and
ISP2 and HybA are apparently unrelated.

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FIG. 2.
Alignment of translated ORFs ISP1 and ISP2 (TrISP1 and
TrISP2) from the DNA region intercalated between hydS and
hydL of T. roseopersicina with
the predicted products of ORF5 and ORF6 of the hmc operon of
D. vulgaris (DvHMC5). The multiple alignment was done by
using the CLUSTALW and PRETTYPLOT programs of the Genetics Computer
Group program package. Homologous amino acids are boxed, the putative
transmembrane hydrophobic domains in the T. roseopersicina sequence are marked with continuous
lines between arrows, the heme (ORF5)-binding conserved histidines (at
positions 83, 96, 180, and 198) are shown marked with asterisks, and
the iron-sulfur cluster (ORF6)-binding domains are indicated with
dashed lines between arrows. As evident from the homologies, ORF5 and
ORF6 contain the corresponding sequences and therefore are not marked
separately.
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The structural genes of the two hydrogenases are at least 15 kb
apart.
Two deoxyoligonucleotides which corresponded to the
N-terminal sequences of the two hydrogenases were synthesized. To
design a probe specific for hydrogenase 1, the N-terminal four amino acids of the small subunit were selected since they differed from the
predicted sequence of HupS (12). For a HupSL-specific probe, the deoxyoligonucleotide that coincided to the first 21 nucleotides of
the hupL sequence was chosen since the corresponding amino acid sequence was missing from the large subunit of the isolated hydrogenase 1.
The two oligonucleotides hybridized to dissimilar DNA regions. The
oligonucleotide specific for hydrogenase 1 did not hybridize with the
cosmid containing the hupSL genes, suggesting that
hydSL was separated from hupSL by at least 15 kb,
the distance of hupSL from the ends of its cosmid (data not
shown). The hybridization results corroborated the existence of two
distinct sets of hydrogenase genes in T. roseopersicina BBS and indicated that the genes
encoding the two hydrogenases were not contiguous.
Separation of two hydrogenase activities by ion-exchange
chromatography.
The synthesis of hydrogenase in R. capsulatus is induced under nitrogenase derepressed conditions by
the hydrogen gas produced through the nitrogenase complex (reviewed in
reference 37). In T. roseopersicina, however, the hydrogenase activity
is apparently constitutively synthesized (18). To detect a
hydrogen-inducible hydrogenase activity in T. roseopersicina, cells were grown either in
ammonia-containing medium (nitrogenase repressed) or in a medium where
glutamate served as nitrogen source (nitrogenase active). The cell
paste was disrupted by sonication and was applied onto a DEAE-cellulose
DE52 ion-exchange column within 2 h. Fractions eluted by a linear
sodium phosphate gradient were assayed by the hydrogen evolution assay
(4).
A single hydrogenase peak, eluting at about 0.3 M sodium phosphate, was
recovered from ammonia-grown cells (Fig.
3). This corresponded to the stable
hydrogenase activity currently identified as hydrogenase 1 and purified
routinely from nitrogenase-repressed T. roseopersicina cells (20).

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FIG. 3.
DEAE chromatogram of total cell extract prepared from
ammonia-grown cells (a; nitrogenase repressed) and cells grown with
glutamate as the nitrogen source (b; nitrogenase active). The hydrogen
evolution activity of each fraction was determined after elution ( )
and following incubation at 4°C under air for 24 h ( ).
Activities are expressed as micromoles of H2 produced per
hour per milligram of protein.
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In contrast to the ammonia-grown cells, two peaks displaying
hydrogenase activity were separated from cells supplied with glutamate
as the nitrogen source. The new hydrogenase peak, present in
T. roseopersicina cells synthesizing
nitrogenase, was tentatively assigned to hydrogenase 2. This
hydrogenase peak emerged at a salt concentration of about 0.1 M,
comparable to the elution profile of the hydrogenase of R. capsulatus (10). The hydrogen-evolving activity in the
peak containing the hydrogenase 2 represented 5 to 30% of the activity
in the hydrogenase 1 peak. This may be due either to a low synthesis of
the protein or to a significantly lower hydrogen-evolving activity of
hydrogenase 2 than of hydrogenase 1; alternatively, perhaps hydrogenase
2 was simply less stable than hydrogenase 1.
Indeed, after storage of the hydrogenase-containing fractions at cold
room temperature for 24 h, about 90% of the hydrogen-evolving activity in the hydrogenase 2 peak was lost, while the hydrogenase 1 peak remained fairly unaltered (Fig. 3). This observation is in good
agreement with the facts that the solubilized hydrogenase 1 is
reversibly inactivated only during purification under air (20), while other hydrogenases (e.g., that of R. capsulatus [10]) are irreversibly inactivated by
oxygen and/or in the cold under similar conditions.
The oxygen and cold sensitivity, combined with the apparently inducible
nature of hydrogenase 2, explains why the enzyme has not been detected
in earlier studies. Hydrogenase 1 has been routinely purified under air
and from nitrogenase-repressed cells (20). The two subunits
of the hydrogenase 1 protein have molecular masses of 34 and 64 kDa,
respectively (24). The estimated molecular masses of the
small (HupS, 36 kDa; HydS, 34 kDa) and large (HupL, 65 kDa; HydL, 64 kDa) subunits are in the same range; therefore, the two hydrogenases
cannot be definitively distinguished on the basis of size. However, it
is to be noted that the biochemical and molecular biology data do not
rigorously exclude the possibility of the presence of more than two
hydrogenases in T. roseopersicina.
Conclusion.
In this study, a 7,873-bp nucleotide sequence from
T. roseopersicina BBS that includes the
hyd genes was cloned and sequenced. The results provide
conclusive evidence for the occurrence of at least two distinct
hydrogenases in T. roseopersicina BBS.
Two hydrogenase fractions with distinct oxygen and cold sensitivity could be isolated from cells grown under conditions where nitrogenase was synthesized, and two sets of genes capable of encoding two distinct
[NiFe]hydrogenases have been identified in T. roseopersicina BBS genomic DNA.
The main source of hydrogenase activity, i.e., hydrogenase 1, has been
characterized as a membrane-associated protein (3, 23).
Indeed, hydS contains a signal peptide coding sequence, similarly to the signal peptide sequence motif upstream from
hupSLC (12). However, once detached from the
membrane, hydrogenase activity remained soluble.
Taking the various observations together, we conclude that the two
T. roseopersicina hydrogenases belong
to the class I of [NiFe]hydrogenases as defined by Wu and Mandrand
(39). They are both heterodimers, they possess subunits of
similar size, and they are both associated with the membrane. The
deduced amino acid sequences of the two small (hupS and
hydS) and large subunit (hupL and
hydL) sequences show 46 and 58% identity, respectively.
Differences between HupSL and HydSL are as follows. HydSL, which has
been implicated in membrane bioenergetic functions (23), is
apparently a constitutive enzyme, whereas HupSL appears to be an
inducible enzyme. Hydrogenase 1 shows outstanding stability against
irreversible heat, oxygen, and protease inactivation (21, 24), while hydrogenase 2 is quickly inactivated under air and/or by the cold (Fig. 3). Mutagenesis studies will be required to establish
unequivocally that the products of the hupSL genes
correspond to the hydrogenase 2 activity.
An intriguing question is the processing and role of the intergenic
2-kb IS between hydS and hydL. This IS is
composed of two ORFs, which may code for electron transfer proteins.
Future experiments are needed to establish the putative link between sulfur metabolism and hydrogenase 1. The accessory genes required to
process and mature hydrogenase 1 in T. roseopersicina are also yet to be located on the
chromosome.
It was noted that under stringent Southern hybridization conditions,
labeled probes of hydSL gave positive hybridization signals only with genomic DNA fragments containing hyd-specific
sequences. As the identification of hydrogenase-encoding genes is
usually done through heterologous hybridization with
hup-related gene probes, any hyd-related sequence
in the genome may have been easily overlooked in other organisms. A
systematic analysis for the occurrence and distribution of this
[NiFe]hydrogenase subfamily is therefore warranted. Preliminary data
show that a hyd-related gene cluster, including the IS, is
present in C. vinosum, an other photosynthetic bacterium
(6).
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ACKNOWLEDGMENTS |
The collaboration was partially supported by travel grants
through the COST Action 8.18 and the French-Hungarian Bilateral Exchange Program "Balaton" (project 29). The Hungarian laboratory thanks the financial support of OTKA, OMFB, PHARE-TDQM,
PHARE-TEMPUS, UNDP HUN/95/002, and the U.S.-Hungarian Joint Fund
(JF221), and the Laboratoire de Biochimie et Biophysique des
Systemes Integres of the French CEA/CNRS UMR314.
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FOOTNOTES |
*
Corresponding author. Mailing address: Institute of
Biophysics, Biological Research Center, Hungarian Academy of Sciences, H-6701 Szeged, P.O. Box 521, Hungary. Phone: (36 62) 432 232. Fax: (36 62) 433 133. E-mail: kornel{at}szbk.u-szeged.hu.
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J Bacteriol, March 1998, p. 1460-1465, Vol. 180, No. 6
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