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Journal of Bacteriology, September 1999, p. 5461-5466, Vol. 181, No. 17
0021-9193/99/$04.00+0
Copyright © 1999, American Society for Microbiology. All rights reserved.
Molecular Analysis of the Gene Encoding a Novel
Transglycosylative Enzyme from Alteromonas sp. Strain O-7
and Its Physiological Role in the Chitinolytic System
Hiroshi
Tsujibo,*
Norihiko
Kondo,
Keiko
Tanaka,
Katsushiro
Miyamoto,
Nao
Baba, and
Yoshihiko
Inamori
Osaka University of Pharmaceutical Sciences,
4-20-1 Nasahara, Takatsuki, Osaka 569-1094, Japan
Received 19 April 1999/Accepted 21 June 1999
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ABSTRACT |
We purified from the culture supernatant of Alteromonas
sp. strain O-7 and characterized a transglycosylating enzyme which synthesized
-(1
6)-(GlcNAc)2,
2-acetamido-6-O-(2-acetamido-2-deoxy-
-D-glucopyranosyl)-2-deoxyglucopyranose from
-(1
4)-(GlcNAc)2. The gene encoding a novel
transglycosylating enzyme was cloned into Escherichia coli,
and its nucleotide sequence was determined. The molecular mass of the
deduced amino acid sequence of the mature protein was determined to be
99,560 Da which corresponds very closely with the molecular mass of the
cloned enzyme determined by sodium dodecyl sulfate-polyacrylamide gel
electrophoresis. The molecular mass of the cloned enzyme was much
larger than that of enzyme (70 kDa) purified from the supernatant of
this strain. These results suggest that the native enzyme was the
result of partial proteolysis occurring in the N-terminal region. The
enzyme showed significant sequence homology with several bacterial
-N-acetylhexosaminidases which belong to family 20 glycosyl hydrolases. However, this novel enzyme differs from all
reported
-N-acetylhexosaminidases in its substrate
specificity. To clarify the role of the enzyme in the chitinolytic
system of the strain, the effect of
-(1
6)-(GlcNAc)2 on the induction of chitinase was investigated.
-(1
6)-(GlcNAc)2 induced a level of production of
chitinase similar to that induced by the medium containing chitin. On
the other hand, GlcNAc, (GlcNAc)2, and
(GlcNAc)3 conversely repressed the production of chitinase to below the basal level of chitinase activity produced constitutively in medium without a carbon source.
 |
INTRODUCTION |
Chitin, an insoluble linear
-1,4-linked polymer of N-acetylglucosamine (GlcNAc), is
the second most abundant polymer in nature. Many species of bacteria
are known to synthesize chitin-degrading enzymes not only for
utilization of chitin as a carbon and nitrogen source but also for
returning chitin to the ecosystem in a biologically usable form.
Chitinase (EC 3.2.1.14) and
-N-acetylglucosaminidase (GlcNAcase; EC 3.2.1.30) are
essential components catalyzing the conversion of insoluble chitin to
its monomeric component. Chitinases hydrolyze the insoluble chitin to
soluble chitin oligomers, and GlcNAcases release GlcNAc residues from
the nonreducing end of oligomers and N-acetylchitobiose
[(GlcNAc)2]. These enzymes are found in a wide variety of
organisms including bacteria, fungi, insects, plants, and animals, and
their corresponding genes have been cloned and characterized. Among
gram-negative bacteria, chitinolytic activity has been described for
strains of Alteromonas (29, 34),
Serratia (3, 11, 12), Aeromonas
(5, 9, 21), Ewingella (10), and
Vibrio (1, 13, 24). Genes encoding these
chitinolytic enzymes can be generally induced by chitin and can be
either induced or repressed by GlcNAc or (GlcNAc)2 which is
a degradation product of chitin. However, the detailed biochemical
mechanisms involved in enzyme induction are not yet fully understood.
We have been studying the chitinolytic system of Alteromonas
sp. strain O-7 to clarify the roles of individual enzymes involved in
chitin degradation, the relationship between structure and function,
and the regulation of gene expression. The chitinolytic marine
bacterium Alteromonas sp. strain O-7 produces at least three
different chitinases (ChiA, ChiB, and ChiC) and three different GlcNAcases (GlcNAcaseA, GlcNAcaseB, and GlcNAcaseC) in the presence of
chitin. Previously, we have purified and characterized chitinases and
GlcNAcases from this strain (29-32). Among them, the genes encoding ChiA (34), ChiC (29), GlcNAcaseB
(33), and GlcNAcaseC (32) have been cloned and
characterized to clarify the role of individual enzymes in the
chitinolytic system of the microorganism. In this strain, total
chitinase activities were induced by chitin and repressed by GlcNAc or
(GlcNAc)2. Chitin must be hydrolyzed to smaller molecules
to transport across the cell membrane. Therefore, we developed an
interest in studying how this insoluble polymer would induce chitinase
production in this strain. Recently, Shimoda et al. reported the highly
efficient formation of a unique
-(1
6)-linked disaccharide of
GlcNAc [(
-(1
6)-(GlcNAc)2)] from either chitin or
chitin oligomers with the culture supernatant from
Alteromonas sp. strain OK2607 (20); however, a
transglycosylative enzyme which produces
-(1
6)-(GlcNAc)2 has not been isolated and
characterized. Here we describe the cloning of a gene encoding a novel
transglycosylative enzyme. This novel enzyme differs from all reported
GlcNAcases in its substrate specificity. Furthermore, we demonstrate
that
-(1
6)-(GlcNAc)2 is an active inducer of
chitinase production for this strain.
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MATERIALS AND METHODS |
Bacterial strains and culture conditions.
Alteromonas
sp. strain O-7 was grown at 27°C in Bacto Marine Broth 2216 (Difco)
and was used as the source of chromosomal DNA. Escherichia
coli JM109 and BL21 were grown in Luria-Bertani medium (LB; 1%
tryptone, 0.5% yeast extract, 0.5% NaCl). For agar medium, LB was
solidified with 1.5% (wt/vol) agar (Nacalai Tesque, Kyoto, Japan). For
the production of a transglycosylative enzyme, Alteromonas
sp. strain O-7 was grown at 27°C in a medium containing, per liter of
artificial seawater (Jamarin S; Jamarin Laboratory, Osaka, Japan),
5.0 g of Bacto Peptone (Difco), 1.0 g of Bacto Yeast Extract
(Difco), and 1.0 g of powdered chitin from crab shell (Nacalai
Tesque). For chitinase induction, Altermonas sp. strain O-7
was grown at 27°C in artificial seawater containing 1% yeast extract
and 50 mM HEPES buffer, pH 7.5 (marine minimal medium, MMM),
supplemented with various carbon sources.
Purification of a transglycosylative enzyme.
Alteromonas sp. strain O-7 was grown at 27°C with
agitation at 200 rpm on a rotary shaker for 18 h. The seed culture
(100 ml) was transferred into a 5-liter jar fermentor containing 2 liters of the medium. Fermentation was carried out at 27°C under aeration of 0.5 liters/min and agitation at 200 rpm for 48 h. The
culture supernatant (1.8 liters) was collected by centrifugation at
10,000 × g at 4°C and was used as a crude enzyme
solution. All purification steps were carried out at 4°C unless
otherwise mentioned. The enzyme was precipitated by adding solid
ammonium sulfate to 40% saturation in an ice bath. After
centrifugation, the pellet was dissolved in a small volume of 50 mM
Tris-HCl buffer (pH 7.5) and was dialyzed overnight against the same
buffer. The dialyzed enzyme solution was applied to a DEAE-Toyopearl
650M column (1.9 by 45 cm; Tosoh, Tokyo, Japan) equilibrated with the same buffer. The column was washed first with buffer and then with a
linear gradient of NaCl (0 to 1.0 M) at a flow rate of 36 ml/h. The
enzyme was eluted at about 0.3 M NaCl. The pooled active fractions were
dialyzed against the buffer and concentrated by ultrafiltration with
NanoSpin Plus (Gelman Sciences, Ann Arbor, Mich.). The concentrated
sample was chromatographed by using a fast-performance liquid
chromatography Q2 anion-exchange column (7 by 52 mm; Bio-Rad)
equilibrated with buffer. The column was washed with buffer, and then
the enzyme was eluted with a linear gradient of 0 to 0.5 M NaCl. Active
fractions were eluted at a concentration of about 0.25 M and used as
the purified enzyme solution.
Enzyme activity assay.
Transglycosylative enzyme activity
was assayed by mixing a 0.1-ml aliquot of approximately diluted enzyme
with 1% (GlcNAc)2 in 50 mM Tris-HCl buffer, pH 7.5. After
incubation at 50°C for 30 min, the reaction was terminated by boiling
the mixture for 5 min. The reaction mixture was filtrated with a
0.2-µm-pore-size membrane filter. The filtrate was analyzed by
high-pressure liquid chromatography with a Shimadzu SPD-6A UV detector
(detection, 215 nm; column, Asahipak NH2P-50 (4.6
by 250 mm);
mobile phase, actonitrile-water (75:25, vol/vol); flow rate, 1.0 ml/min; temperature, ambient). One unit of a transglycosylative enzyme
was defined as the amount of enzyme that produced 1 µmol of
-(1
6)-(GlcNAc)2 in 1 min under the conditions
described above.
SDS-PAGE and Western blot analysis.
Sodium dodecyl
sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) was done as
described before (34). After electrophoresis, activity
staining of chitinases in polyacrylamide gels was carried out by the
method of Wolfgang et al. (39). Western blot analysis was
performed with enhanced chemiluminescence-Western blotting detection
reagents (Amersham Life Science Ltd.) according to the manufacturer's instructions.
N-terminal amino acid sequence and protein assay.
Purified
protein was analyzed by an Applied Biosystems model 473A gas-phase
sequencer. Protein was assayed by the method of Bradford
(2), with bovine serum albumin as a standard.
Isolation of the gene encoding a transglycosylative enzyme.
Alteromonas sp. strain O-7 total DNA, prepared as described
previously (34), was used as a template for PCR. The
bidirectional degenerated PCR primers were synthesized based on the
N-terminal amino acid sequence of purified enzyme. The sequences of the
primers were
5'-CA(A,G)GA(C,T)-AA(C,T)CA(A,G)CC(A,C,G,T)GA(C,T)GC-3' and 5'-CC(A,C,G,T)GT(A,C,T)AT-(A,C,G,T)GT(A,C,T)AT(A,C,G,T)CC-3'. PCR amplification was performed for 50 cycles consisting of
94°C for 30 s, 40°C for 2 s, and 74°C for 30 s.
The 75-bp product obtained was subcloned into pMOS Blue (Amersham Life
Science), sequenced, and used as a probe.
Chromosomal DNA was digested with EcoRI and electrophoresed
on 0.6% agarose gel. The fragments in the range of 3.6 to 4.2 kb were
excised from the gel, purified with a Sephaglas BandPrep kit
(Pharmacia), and then ligated into the dephosphorylated
EcoRI site of pUC18; the recombinant plasmids were inserted
into competent E. coli JM109. The library was screened by
colony hybridization with the alkaline phosphatase-labeled amplified
fragment as a probe (AlkPhos DIRECT; Amersham Life Science).
Hybridization and washing were performed according to the supplier's instructions.
Nucleotide sequencing.
A series of subclones from a 3.6-kb
EcoRI fragment obtained by colony hybridization were
prepared by using pUC18 or pUC19. The nucleotide sequence was
determined by the dideoxy-chain termination method (19) with
a Thermo Sequenase fluorescence-labeled primer cycle sequencing kit
(Amersham Life Science). DNA fragments were analyzed on a Hitachi model
SQ3000 DNA sequencer. Sequence data were analyzed with GENETYX computer
software. Homology searches in GenBank were carried out with a BLAST program.
Induction study of chitinases.
Alteromonas sp. strain
O-7 was precultured in ZoBell 2216E medium at 27°C for 16 h.
After centrifugation, the cells were washed twice with artificial
seawater and suspended with a small volume of artificial seawater. The
cells were used to inoculate a 100-ml flask with three indents
containing 20 ml of MMM supplemented with various carbon sources.
Cultures were grown at 27°C under agitation at 200 rpm on a rotary
shaker for 24 h, and chitinase activities in the culture
supernatant were periodically measured.
Chemicals.
-(1
6)-(GlcNAc)2 was prepared by
enzymatic conversion of (GlcNAc)2 by the method of Shimoda
et al. (20).
-(1
4)-(GlcNAc-GlcN) and
-(1
4)-(GlcN-GlcNAc) were kindly provided by K. Ohishi (Numazu Industrial Research Institute of Shizuoka Prefecture) and K. Tokuyasu (National Food Research Institute), respectively. (GlcNAc)2
was kindly provided by the Yaizu Suisan Chemical Co. (Shizuoka, Japan). All other chemicals were of reagent grade and obtained commercially.
Nucleotide sequence accession number.
The nucleotide
sequence data reported in this paper will appear in the
DDBJ/EMBL/GenBank nucleotide sequence databases with accession no.
AB026053.
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RESULTS |
Purification of a transglycosylative enzyme.
To characterize a
transglycosylative enzyme, the enzyme was purified from the supernatant
of Alteromonas sp. strain O-7 by ammonium sulfate
precipitation and DEAE-Toyopearl 650M column and Q2 anion-exchange
column chromatographies. By the procedure described, the enzyme was
purified about 4.2-fold with a yield of 3.5%, as shown in Table
1. The yield of the enzyme was a very low
because much of the activity left in the fractions was discarded to
improve the efficiency of the purification. The purified enzyme showed
a single band on SDS-PAGE (Fig. 1). The
molecular masses of the enzyme were 70 and 68 kDa, as determined by
SDS-PAGE and analytical size exclusion fast-performance liquid
chromatography (Superdex 200; Pharmacia), respectively. These results
indicate that the enzyme is a monomeric protein. The N-terminal
sequence of the enzyme was QDNQPDASGYKLEVDAFSGITITG.

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FIG. 1.
SDS-PAGE analysis of a transglycosylative enzyme from
Alteromonas sp. strain O-7 and the cloned enzyme from
E. coli. Lanes: 1, the cloned enzyme; 2, a
transglycosylative enzyme from Alteromonas sp. strain O-7;
M, marker proteins.
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Substrate specificity.
We investigated the substrate
specificity of the enzyme by using various substrates, such as GlcNAc,
chitin oligosaccharides from (GlcNAc)2 to
(GlcNAc)6, GlcNAc-GlcN (GlcN, glucosamine), GlcN-GlcNAc,
p-nitrophenyl-
-N-acetylglucosamine
(PNP-GlcNAc) and PNP-GlcN. The enzyme showed transglycosylative
activity on (GlcNAc)2 but showed no activity on the other
substrates tested. The pH activity profile obtained with
(GlcNAc)2 showed a maximum at pH 7.0, and the temperature
optimum was 50°C.
Cloning of the transglycosylative enzyme-encoding gene.
To
isolate the transglycosylative enzyme-encoding gene from a genomic
library of Alteromonas sp. strain O-7, a PCR probe was synthesized on the basis of the N-terminal amino acid sequence of the
enzyme. Southern hybridization using this probe against total DNA
digested with various restriction endonucleases showed that the probe
hybridized strongly with EcoRI fragments of about 3.6 kb
(data not shown). Thus, for library construction, the DNA fragments
with sizes between 3.6 and 4.2 kb were ligated to pUC18 digested with
EcoRI and introduced into E. coli JM109. Among
1,056 transformants, four positive clones which hybridized to the probe were isolated by colony hybridization. The clones (pTG1) were analyzed
by restriction endonuclease digestion and found to contain a common
3.6-kb insert (Fig. 2). However, analysis
of the entire nucleotide sequence of the inserted DNA indicated
deletion of the 5' upstream region. Thus, we cloned the upstream region
of the open reading frame (ORF) by the DNA-probing method with a 214-bp
fragment, isolated from the inserted DNA by EcoRI and
HindIII digestion, as a probe. Southern hybridization
showed that a 1.4-kb chromosomal fragment digested with PstI
and HindIII hybridized to the probe. This fragment was
recovered from agarose gel, cloned into pUC18, and transformed into
E. coli JM109. Among the approximately 1,000 transformants
tested, a set of five clones (pTG2) containing identical inserted DNA
was obtained. Analyses by restriction endonuclease and by sequencing of
the fragment showed that two inserts from pTG1 and pTG2 had in common a
214-bp EcoRI-HindIII region. Plasmid pTG3,
which contained the full-length gene encoding the enzyme, was
constructed by combining a 3.6-kb EcoRI fragment from pTG1 and a 1.2-kb PstI-EcoRI fragment from pTG2 (Fig.
2).

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FIG. 2.
Restriction map of the gene, hex99, encoding
a transglycosylative enzyme. The hybridization probe
(EcoRI-HindIII fragment) is represented by
the box; the arrow indicates the ORF and direction of transcription.
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Nucleotide sequence and putative product of the gene.
The
nucleotide sequence of each strand of pTG3 was determined, and sequence
analysis revealed a single ORF. The ORF has an ATG start codon at
position 91 which is preceded by a possible ribosome-binding site
(GGAG) at a distance of five nucleotides. It could encode a protein of
914 amino acids with a calculated molecular mass of 101,532 Da. The
molecular mass of the translated protein was much larger than that of
the enzyme purified from the supernatant of this strain (70 kDa),
determined by SDS-PAGE. The N-terminal amino acid sequence of the
enzyme purified from the culture supernatant did not match any region
near the N terminus of the deduced polypeptide; however, it coincided
precisely with the sequence starting from glutamine 285 of the deduced
polypeptide. These results suggest that two forms of enzyme differing
in size were the result of partial proteolysis occurring in the
N-terminal region. The deduced N-terminal amino acid sequence showed
the typical features of signal peptides, which are composed of a
positively charged region, a hydrophobic region, and a signal sequence
cleavage site. Characterization of the putative cleavage site suggests that it may lie between serine 13 and leucine 14, which is compatible with the -3,-1 rule of von Heijne (37).
Comparison of the deduced product of the ORF with the BLAST database
revealed that the gene encoded a protein homologous to
the several

-hexosaminidases belonging to family 20 (
7,
8).
The ORF
was designated
hex99 on the basis of the molecular mass
of
the mature protein. The gene product Hex99 is aligned with
some
representative enzymes in Fig.
3. Hex99
showed homology with

-hexosaminidase (32% identity) from
Pseudoalteromonas sp. strain
S9 (
25), chitobiase
(31% identity) from
Serratia marcescens (
27),

-
N-acetylglucosaminidase (31% identity) from
Alteromonas sp. strain O-7 (
33),

-hexosaminidase (29% identity) from
Vibrio vulnificus
(
22), chitobiase (29% identity) from
V. harveyi
(
23),
and

-
N-acetylhexosaminidase (29%
identity) from
V. furnissi (
14).
Based on the
crystal structure of
S. marcescens chitobiase
(
28),
it was proposed that chitobiase uses an acid-base
reaction mechanism
with glutamic acid 540 as the catalytic amino acid,
which is well
conserved in all family 20 glycosyl hydrolases. Despite
this similarity,
there is significant difference in substrate
specificity. The
chitobiases,

-hexosaminidase, and

-
N-acetylglucosaminidase so
far reported hydrolyzed
PNP-GlcNAc and/or PNP-GlcN. However, Hex99
showed no activity toward
these chromogenic substrates.

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FIG. 3.
Comparison of the amino acid sequence of Hex99 with
those of the active-site regions of
-N-acetylhexosaminidases. The residue number of the first
amino acid in each line is shown on the left. Residues that are
identical are indicated by white letters on a black background. The
putative active-site glutamic acid residue is marked by an asterisk.
ALTGE, Hex99 from Alteromonas sp. strain O-7; PAHEX,
-hexosaminidase from Pseudoalteromonas sp. strain S9;
SMHEX, -N-acetylhexosaminidase from S. marcescens; ALGLB, -N-acetylglucosaminidase from
Alteromonas sp. strain O-7, VVHEX,
-N-acetylhexosaminidase from V. vulnificus;
VHGLC, -N-acetylglucosaminidase from V. harveyi; VFHEX, -N-acetylhexosaminidase from
V. furnissii.
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Purification of the cloned enzyme.
To purify and characterize
the cloned enzyme, E. coli carrying pTG3 was cultured to the
early stationary phase at 37°C with vigorous shaking. The cells (10.8 g) were collected by centrifugation, and the periplasmic fraction
containing a transglycosylating enzyme (400 ml) was prepared as
described previously (34). The cloned enzyme was purified
from the periplasmic fraction by the same procedure as the native
enzyme from the supernatant of Alteromonas sp. strain O-7.
The enzyme showed a single band on SDS-PAGE, and the molecular mass was
estimated to be 99 kDa, as shown in Fig. 1. The N-terminal sequence of
the cloned enzyme (GLALL) was good agreement with the sequence starting
from glycine 14 of the deduced amino acid sequence encoded by the
hex99 gene. Thus, we determined that cleavage of the signal
peptide occurred between serine 13 and glycine 14. The cloned enzyme
showed almost the same enzymatic properties (specific activity,
substrate specificity, and optimum pH and temperature) as the native
enzyme, indicating that the N-terminal portion of Hex99 is not
essential for enzyme activity. This N-terminal portion of Hex99 showed
no significant similarity to any other protein in GenBank databases.
Effect of
-(1
6)-(GlcNAc)2 on chitinase
induction.
To clarify the role of Hex99 in the chitinolytic system
of the strain, the effect of
-(1
6)-(GlcNAc)2 on
induction of chitinases was investigated. When Alteromonas
sp. strain O-7 was cultured in MMM without a carbon source, the strain
produced a low level of chitinase activity (Fig.
4). When the strain was grown in medium containing powdered chitin or
-(1
6)-(GlcNAc)2,
chitinase activity gradually increased and reached the maximum after
12 h. Alteromonas sp. strain O-7 showed almost
identical growth curves in MMM with and without a carbon source (data
not shown). The induction effect increased as the concentration of
-(1
6)-(GlcNAc)2 rose. Chitinase activity was induced
2.4-fold by 0.1% chitin and 2.0-fold by 1.0%
-(1
6)-(GlcNAc)2 compared to the basal level of
chitinase produced when the strain was cultured for 12 h in MMM
without a carbon source. On the other hand, GlcNAc,
(GlcNAc)2, and (GlcNAc)3 repressed chitinase
production to below the basal level. Since these results were based on
total chitinase activities of more than one enzyme, activity staining
of chitinases in SDS-polyacrylamide gels containing glycol chitin was
performed to examine the level of induction of individual enzymes (Fig.
5). Four chitinase activity bands corresponding to proteins of 85 kDa (Chi85), 65 kDa (ChiA, a truncated form of Chi85), 45 kDa (ChiC), and 35 kDa (ChiB) were observed in all
culture supernatants tested. The synthesis of each chitinase increased
in the presence of chitin or
-(1
6)-(GlcNAc)2, whereas GlcNAc, (GlcNAc)2, and (GlcNAc)3 repressed the
production of chitinases. We also tested the effect of addition of
GlcNAc, (GlcNAc)2, (GlcNAc)3, or glucose to the
chitin-containing medium. Repression was observed when GlcNAc,
(GlcNAc)2, or (GlcNAc)3 was added as a carbon
source, whereas glucose had no effect (data not shown). These results conformed well to those shown in Fig. 4. We previously suggested that
the 65-kDa chitinase (ChiA) is a truncated form of the initial gene
product (Chi85), based on comparison between the N-terminal amino acid
sequence of ChiA and the deduced amino acid sequence of the cloned gene
and their enzymatic properties. Western blot analysis using a
polyclonal rabbit antibody to ChiA revealed that ChiA is a
proteolytically processed form of Chi85 (Fig. 5).

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FIG. 4.
Time course of chitinase production by
Alteromonas sp. strain O-7 cultured in media containing
various carbon sources. Aliquots were taken at the indicated times and
centrifuged; chitinase activity was measured with
PNP-(GlcNAc)2 as a substrate. Symbols: , 0.1% chitin;
, 1% -(1 6)-(GlcNAc)2; , 0.1%
-(1 6)-(GlcNAc)2; , 0.1% glucose; , 0.1%
(GlcNAc)2; , 0.1% GlcNAc; , 0.1%
(GlcNAc)3; , no addition. Data represent the means of
three independent experiments.
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FIG. 5.
Effects of various carbon sources on induction of
extracellular chitinase activity. (A) Zymogram of chitinase activity;
(B) Western blot analysis. Alteromonas sp. strain O-7 was
cultured in media containing various carbon sources; samples were taken
at 12 h. Lanes: 1, no addition; 2, 0.1% chitin; 3, 1%
-(1 6)-(GlcNAc)2; 4, 0.1%
-(1 6)-(GlcNAc)2; 5, 0.1% (GlcNAc)2; 6, 0.1% GlcNAc; 7, 0.1% (GlcNAc)3.
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DISCUSSION |
Chitinolytic bacteria convert chitin to GlcNAc by the cooperative
interaction of two enzymes, chitinase and GlcNAcase, and the process is
a key transformation step in the biological carbon and nitrogen cycles
in nature. A number of chitinolytic enzymes have been well
characterized biochemically, and their genes have been identified. We
recently found in the culture supernatant of Alteromonas sp.
strain O-7 grown in the presence of chitin a novel transglycosylative
enzyme which is clearly different in substrate specificity from the
chitinolytic enzymes so far reported. In the present study, we
identified and sequenced a gene (hex99) encoding a
transglycosylative enzyme from the strain and expressed the gene in
E. coli. The cloned enzyme was purified from the periplasmic fraction of E. coli transformants. In most cases, when genes
encoding foreign extracellular proteins are cloned in E. coli, the precursor is synthesized, processed, and exported across
the inner membrane. The cloned enzyme was not secreted into the growth
medium but accumulated in the periplasmic space, indicating that the
signal peptide is functional in E. coli; however,
Alteromonas sp. strain O-7 makes use of a secretion
machinery different from that of E. coli to cross the outer
membrane. The sequence of the first five amino acids at the N terminus
of the pure protein was determined and found to match exactly an amino
acid sequence deduced from the gene sequence of hex99. The
deduced amino acid sequence of the mature protein, based on the
position of the N-terminal amino acid sequence, includes 901 amino
acids that would theoretically encode a protein with an
Mr of 99,560. This corroborates the result of
SDS-PAGE and demonstrates that the protein purified and characterized in this work was encoded by the hex99 gene from
Alteromonas sp. strain O-7. On the other hand, the native
enzyme of Alteromonas sp. strain O-7 was recovered as a
single 70-kDa polypeptide from the growth medium, and the N-terminal
amino acid sequence matched the sequence starting from Gln285 of the
deduced polypeptide, indicating that the enzyme is truncated form of
the initial gene product. Two proteolytic enzymes (AprI and AprII) were
detected in the culture supernatant of the strain (35, 36).
Therefore, AprI and/or AprII seem to be involved in the specific
cleavage of Hex99, although this remains to be examined experimentally. Study of the function of the N-terminal region is under way.
Amino acid sequence analysis showed that Hex99 has homology to
bacterial
-N-acetylglucosaminidase,
-N-acetylhexosaminidase, and chitobiase belonging to
family 20 glycosyl hydrolases (7, 8); on the basis of these
alignments we believe that Hex99 should be classified in family 20. Family 20 enzymes generally hydrolyze PNP-
-GlcNAc and/or
PNP-
-GalNAc; however, unlike these enzymes, Hex99 was inactive with
these chromogenic substrates and all other substrates tested except
(GlcNAc)2. Although there is extensive literature on
hexosaminidases from a wide variety of organisms, to our knowledge
there are no reports on enzymes with unique specificity like that of Hex99.
To clarify the role of Hex99 in the chitinolytic system of the strain,
the effect of
-(1
6)-(GlcNAc)2 on induction of
chitinases was investigated. In chitinase-producing microorganisms,
chitin is a common inducer of chitinase production. However, since
chitin is insoluble and impermeable to microorganisms, a soluble
degradation product(s) such as GlcNAc, (GlcNAc)2, or higher
oligomers is considered to act as a direct inducer of chitinase. For
example, it has been reported that chitinases from V. furnissi (1), V. harveyi (17), and Pseudoalteromonas sp. strain S9 (26) are
induced by GlcNAc, and chitinases from S. marcescens
(38) are induced by (GlcNAc)2. On the other
hand, it has been shown that GlcNAc represses chitinase production in
S. marcescens (15) and S. lividans
(18). In Alteromonas sp. strain O-7, chitin
induced four chitinases differing in size. On the other hand, GlcNAc,
(GlcNAc)2, and (GlcNAc)3, which are soluble
degradation products of chitin, repressed the production of chitinases
to below the basal level of chitinase activity produced constitutively
in MMM without a carbon source. This was probably because the
membrane-associated GlcNAcase of this strain (31),
designated GlcNAcaseA, readily split (GlcNAc)2 or higher
oligosaccharides into GlcNAc. These results suggest that a soluble
substrate analog(s) of low molecular weight other than GlcNAc and
(GlcNAc)2 acts as an effective inducer in
Alteromonas sp. strain O-7. Thus, an investigation of the
active inducer for chitinase production was undertaken. Chitinolytic
activity was induced when the strain was grown in medium containing
-(1
6)-(GlcNAc)2.
-(1
6)-(GlcNAc)2
induced a level of production of chitinase similar to that induced by
medium containing chitin. Repression was observed when GlcNAc,
(GlcNAc)2, or (GlcNAc)3 was added to medium
containing chitin, whereas the addition of glucose had no effect.
Chitin degradation by microorganisms is extraordinarily complex,
involving multiple signal transduction systems and many proteins
(1). Montgomery and Kirchman have demonstrated that
production of chitin-binding proteins, chitinase activity, and
attachment to chitin are induced in V. harveyi by chitin and
GlcNAc oligomers (17). Thus, it remains to be investigated
if proteins other than chitinase involved in the chitin degradation
system of Alteromonas sp. strain O-7 are inducible by the
addition of
-(1
6)-(GlcNAc)2.
From the pioneering work of Monod (16), it is known that
some substrate analogs which cannot be enzymatically cleaved are effective inducers for glycosidases. In induction of
-galactosidase in E. coli (4), an active inducer is not lactose
but allolactose (6-O-
-D-galactopyranosyl-D-glucose),
which is a transglycosylation product from lactose by
-galactosidase
itself. We determined that
-(1
6)-(GlcNAc)2 formed by
extracellular Hex99 was the smallest molecule to induce chitinase
production in Alteromonas sp. strain O-7. The involvement of
other elements in chitinase induction could not be excluded, because
recent report by Chernin et al. demonstrated that quorum-sensing
control mediated by N-hexanoyl-L-homoserine lactone plays an important role in the regulation of chitinase production in a gram-negative bacterium (6).
In conclusion, we propose that induction of chitinase by chitin occurs
in Alteromonas sp. strain O-7 by the following process. Chitin is converted by low constitutive levels of chitinases to (GlcNAc)2, some of which is cleaved by membrane-associated
GlcNAcaseA. The extracellular (GlcNAc)2 is subsequently
transglycosylated to
-(1
6)-(GlcNAc)2, an active
inducer, by extracellular Hex99, and
-(1
6)-(GlcNAc)2
enhances the expression of chitinase genes. Since
-(1
6)-(GlcNAc)2 induces chitinase production, it
presumably interacts with the transcriptional regulatory protein that
control the expression of chitinase genes. Studies of the transport
system and metabolic route of
-(1
6)-(GlcNAc)2 are
under way to obtain more information about the mechanism of induction
of chitinase genes in Alteromonas sp. strain O-7.
 |
ACKNOWLEDGMENTS |
We are grateful to Kazuyoshi Masaki (Toyo Suisan Kaisha, Ltd.,
Tokyo, Japan) for helpful advice and timely guidance. We are also
grateful to Toyo Suisan Kaisha for providing the authentic sample of
-(1
6)-(GlcNAc)2.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Osaka University
of Pharmaceutical Sciences, 4-20-1 Nasahara, Takatsuki, Osaka 569-1094, Japan. Phone and fax: (81-726) 90-1057. E-mail:
tsujibo{at}oysun01.oups.ac.jp.
 |
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Journal of Bacteriology, September 1999, p. 5461-5466, Vol. 181, No. 17
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Copyright © 1999, American Society for Microbiology. All rights reserved.
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