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Journal of Bacteriology, January 1999, p. 493-500, Vol. 181, No. 2
Institut für Biotechnologie 1, Forschungszentrum Jülich GmbH, D-52425 Jülich,
Germany,1 and
Department of
Microbiology, Groningen Biomolecular Sciences and Biotechnology
Institute, University of Groningen, Kerklaan 30, NL-9751 NN Haren,
The Netherlands2
Received 17 August 1998/Accepted 9 November 1998
In Bacillus subtilis, the secretion of extracellular
proteins strongly increases upon transition from exponential growth to the stationary growth phase. It is not known whether the amounts of
some or all components of the protein translocation apparatus are
concomitantly increased in relation to the increased export activity.
In this study, we analyzed the transcriptional organization and
temporal expression of the secA gene, encoding a central
component of the B. subtilis preprotein translocase. We
found that secA and the downstream gene (prfB)
constitute an operon that is transcribed from a vegetative
( Transport of secretory proteins
across the Bacillus subtilis plasma membrane is mediated by
an export machinery which consists (at least partially) of components
that are homologous to the well-characterized Sec proteins of
Escherichia coli (52). Genes encoding homologues
of the inner membrane proteins SecY (27, 43) and SecE
(15), which most likely form the core of the protein-conducting pathway (8), and SecDF (3),
which is thought to increase the efficiency of protein translocation at the SecYE core complex (9), have been identified in
B. subtilis. In addition, a homologue of the E. coli SecA protein, which is known to couple the energy of ATP
binding and hydrolysis to protein translocation (10, 20),
has also been found in B. subtilis (31, 34).
An involvement of these Sec proteins in the secretion process of
B. subtilis has been inferred from various functional analyses (3, 15, 17, 22, 28, 31, 47, 50).
B. subtilis secretes most of its extracellular enzymes
in a temporally controlled manner. Whereas during exponential growth relatively small quantities of exoproteins are released into the growth
medium, a substantial increase in exoprotein secretion is observed when
the cells enter the post-exponential growth phase (for reviews, see
references 11 and 33). This
increase in secretion activity is due mainly to an increased synthesis
of the corresponding secreted proteins for which, among other
regulatory networks, the DegS-DegU two-component system is of crucial
importance (11, 26). However, no data are available
concerning the temporal regulation of the sec genes during
growth of B. subtilis. In particular, it is not known
whether the amounts of some or all components of the protein
translocation machinery are concomitantly increased with the temporal
demand for an increased secretion activity in the post-exponential
growth phase.
In the work described here, we analyzed the transcriptional
organization and temporal expression of the B. subtilis
secA gene, encoding the translocation ATPase subunit of the
preprotein translocase. We show that secA is the first gene
in an operon and that transcription of this operon is
initiated from a promoter which is highly similar to
Bacterial strains and growth conditions.
E. coli JM109
(53) was grown at 37°C in Luria-Bertani (LB) medium
(25) containing ampicillin (100 µg ml DNA techniques and plasmid constructions.
Standard
procedures (36) were used for preparation of plasmid DNA,
isolation of DNA fragments, restriction, ligation, and other DNA techniques.
0021-9193/99/$04.00+0
Copyright © 1999, American Society for Microbiology. All rights reserved.
Temporal Expression of the Bacillus subtilis secA
Gene, Encoding a Central Component of the Preprotein
Translocase
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ABSTRACT
Top
Abstract
Introduction
Materials and methods
Results
Discussion
References
A-dependent) promoter located upstream of
secA. Furthermore, using different independent methods, we
found that secA expression occurred mainly in the
exponential growth phase, reaching a maximal value almost precisely at
the transition from exponential growth to the stationary growth phase.
Following to this maximum, the de novo transcription of
secA sharply decreased to a low basal level. Since at the
time of maximal secA transcription the secretion activity
of B. subtilis strongly increases, our results clearly demonstrate that the expression of at least one of the central components of the B. subtilis protein export apparatus is
adapted to the increased demand for protein secretion. Possible
mechanistic consequences are discussed.
![]()
INTRODUCTION
Top
Abstract
Introduction
Materials and methods
Results
Discussion
References
A-dependent promoters. Furthermore, we found by
different independent criteria that expression of secA is
maximal at the end of the exponential growth phase, after which a
decrease in transcription can be observed. The results indicate that,
like the synthesis of secreted proteins, the synthesis of at least one
of the central components of the B. subtilis preprotein
translocase is temporally controlled.
![]()
MATERIALS AND METHODS
Top
Abstract
Introduction
Materials and methods
Results
Discussion
References
1) as
required. B. subtilis DB104, a strain that secretes
only low levels of proteases into the culture supernatant
(16), and its derivatives DB104-4 and DB104-4T were grown at
37°C in LB, 2xYT (25), sporulation (39), or
minimal (41) medium containing chloramphenicol (5 µg
ml
1) or kanamycin (20 µg ml
1) as
required. B. subtilis DB104-4, containing a
transcriptional secA-lacZ fusion integrated into the
chromosomal amyE gene, was constructed by transforming DB104
with linearized plasmid pDG268-4 (see below), selecting for
chloramphenicol resistance and screening for an
-amylase-negative
phenotype on LB plates containing 0.6% (wt/vol) amylopectin-azure
(Sigma, Deisenhofen, Germany). DB104-4T, containing a translational
secA-lacZ fusion integrated into the amyE gene,
was constructed by the same procedure except that plasmid pDG268-4T
(see below) was used.
-galactosidase reporter, and transcription of the
corresponding gene is under the control of the secA
promoter. For integration of the secA-lacZ fusions into the
amyE gene, pDG268-4 and pDG268-4T were linearized with
MscI and used to transform B. subtilis
DB104. Chloramphenicol-resistant and amylase-negative transformants
were selected, resulting in B. subtilis DB104-4 and
DB104-4T, respectively.
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RNA techniques. To isolate total RNA, we used an RNeasy total RNA kit (Qiagen, Hilden, Germany) as instructed by the manufacturer. The amount of total RNA was quantified by measuring the optical density at 260 nm (OD260) of each preparation. Furthermore, the RNA samples used in the Northern blotting and the primer extension experiments were additionally examined with respect to the amount and intactness of the RNA preparations by formaldehyde-agarose gel electrophoresis and staining with ethidium bromide (49). Northern blot analyses were performed essentially as described by Börmann et al. (4). To obtain DIG-labeled RNA probes 1 to 4 (locations in the orf189-secA-prfB region are shown in Fig. 1), plasmids pMHP1 to -4 were used as templates for in vitro transcription using a DIG RNA labeling kit (Boehringer Mannheim GmbH, Mannheim, Germany) as instructed by the manufacturer. For detection of hybridization signals, a Boehringer nonradioactive nucleic acid labeling and detection kit was used. Primer extension experiments were performed as described by Sambrook et al. (36). The synthetic oligonucleotide OMKL48 (GTATCTATTCAGCGTACGT), which is complementary to the noncoding strand of the 5' end of the secA gene (corresponding to nucleotides 39 to 57 of the secA structural gene), was used as the primer in the primer extension experiments. Dideoxynucleotide chain termination sequencing reactions (37), using the same primer and an appropriate plasmid DNA (pBO1) as the template, were run in parallel on the gel to allow determination of the endpoints of the extension products.
Other techniques.
-Galactosidase activities of
B. subtilis cells containing transcriptional or
translational secA-lacZ fusions were determined by the
procedure of Nicholson and Setlow (29), using
o-nitrophenyl-
-D-galactopyranoside as the
substrate. The measured
-galactosidase activity was normalized by
the method of Miller (25).
-Amylase secreted into the
culture supernatant of B. subtilis DB104 was assayed by
the method of Bernfeld (2), and the resulting activities
(units) were expressed in terms of micromoles of maltose liberated in
60 min at 37°C by 1 ml of culture supernatant. Total amounts of
secreted proteins in the culture supernatant of DB104 were determined
by the bicinchoninic acid method of Walker (51) after
precipitation of the proteins with trichloroacetic acid (10%, final
concentration). Sodium dodecyl sulfate-polyacrylamide gel
electrophoresis (SDS-PAGE) and Western blotting using
anti-B. subtilis SecA antibodies were performed as
described previously (24).
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RESULTS |
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The B. subtilis secA gene is the first gene in a
bicistronic operon.
The chromosomal organization of
the B. subtilis secA region is shown in Fig. 1. The
secA gene is located downstream of the fliD
operon, whose gene products are involved in the formation of
flagella, and a gene (orf189) of unknown function, which is followed by a putative rho-independent terminator (7).
Downstream of secA, we identified a gene (prfB)
which is preceded by a putative ribosome-binding site and which encodes
a homologue of the E. coli protein release factor 2 (32). No putative promoter or terminator sequences are found
in the secA-prfB intergenic region, suggesting that
secA and prfB may be located in an operon
which is transcribed by a promoter located upstream of secA.
In fact, a promoter sequence (TTGGAA-16 bp-TATGAT) showing good
agreement to the consensus promoter sequence recognized by the major
vegetative sigma factor (
A) (12) was
identified 80 to 107 bp upstream of the secA start codon
(31, 34). In addition, an operon structure
consisting of secA and prfB was also suggested
from computer analyses of the complete nucleotide sequence of the
B. subtilis chromosome (18).
|
A-dependent promoter previously identified by
sequence analysis, our data clearly indicate that this promoter is in
fact the promoter element involved in secA transcription
initiation. We observed that in the primer extension experiments,
as in the Northern blotting experiments, the intensities of the
obtained signals were significantly higher in RNA preparations
extracted from exponentially growing cells (lanes 1 and 2) than in RNA
extracted from cells grown to the late exponential (lane 3) or
post-exponential (lane 4) phase. Identical results were obtained for
RNA isolated at comparable time points during growth from cells that
had been grown in sporulation medium (data not shown).
|
Transcription of the secA gene is temporally
regulated.
Since the results described above suggested that
expression of secA is temporally modulated in the cell,
quantitative measurements of secA expression were performed
with transcriptional and translational fusions of the lacZ
reporter gene to 5' fragments of secA. A 456-bp MscI/HindIII DNA fragment from pBO1
(31) containing the orf189-secA intergenic region
and the 5' end of the secA gene was cloned into the
lacZ fusion vector pDG268 (1) in two different
ways. In plasmid pDG268-4, the spoVG-lacZ gene of pDG268 was
placed under the regulatory control of the secA promoter,
resulting in a transcriptional fusion. In pDG268-4T, the 5' end of
secA was fused in frame to the lacZ reporter
gene, resulting in a translational secA-lacZ fusion. Both
fusions were introduced by double-crossover recombination in single
copy into the amyE locus of the chromosome of B. subtilis DB104, and
-galactosidase activity in the resulting
strains (DB104-4 and DB104-4T) was monitored throughout growth (Fig.
4). In both strains, an
increase in
-galactosidase activity was observed during
exponential growth, reaching a maximal value at the end of the
exponential growth phase (which is defined as
T0). Upon entering the post-exponential phase,
the strains exhibited a relatively sharp decrease of
-galactosidase
activity, reaching a low basal level approximately 2 to 3 h after
T0. The observed patterns were independent of
the growth medium, since similar profiles of
-galactosidase activity
were obtained with both strains in sporulation medium (Fig. 4A and C),
rich medium (Fig. 4B and D), and minimal medium (data not shown). In
addition, these results were in agreement with the temporal effects
observed in the Northern blotting and primer extension experiments,
which also indicated a maximal expression of secA during
exponential growth and a sharp decrease of transcription shortly after
T0. Furthermore, the analysis of
-amylase
secretion (Fig. 4E) and of protein secretion in general (by
measuring the amount of total protein in the supernatant) (Fig.
4F) during growth showed that the time point of maximal
secA expression coincides with the beginning of the
high-level protein secretion period in B. subtilis.
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DISCUSSION |
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The increase in protein secretion activity is, among competence development and sporulation, one of the various possible post-exponential growth means by which B. subtilis and related Bacillus species adapt to unfavorable growth conditions, such as nutrient limitation (42). Synthesis of the precursor forms of the secreted proteins drastically increases at the level of transcription of the corresponding genes upon transition from exponential to stationary growth, and this increase is controlled by complex regulatory networks (11). It remains an open question whether the number of protein export sites normally present in low-level secreting exponentially growing cells is sufficient to allow the effective translocation of the abundance of exoproteins in the postexponential growth phase or whether the amounts of one or several components of the protein secretion apparatus must be adapted to this elevated secretion activity.
In this report, we have shown that the secA gene, encoding
one of the central components of the B. subtilis
preprotein translocase, is transcribed predominantly in the exponential
growth phase. This result is in agreement with our finding that the
secA gene, together with the prfB gene which is
located downstream of secA, is transcribed from a promoter
with a sequence very similar to promoter sequences recognized by
A, the major vegetative sigma factor of B. subtilis (12). Maximum secA expression is
reached at the end of the exponential growth phase, almost precisely at
the time point corresponding to T0. Surprisingly, upon transition to the stationary growth phase, de novo
transcription of the secA gene sharply decreases to a low
basal level. Despite this fact, significant amounts of SecA protein can
be detected also at much later time points of growth, probably due to
the long half-life of the SecA protein in B. subtilis (46). Upon abrupt shutoff of secA transcription
at the transition to stationary growth phase, the slow decrease in the
amount of SecA protein that is observed at later time points can be
explained by a dilution of the presynthesized SecA protein to the
daughter cells during the remainder of cell divisions after
T0; possibly some residual de novo synthesis may
also occur. With respect to the time period of high-level protein
secretion, which extends from approximately T0
to T4/T5 (33, 38), it is
worth emphasizing that maximal secA gene expression and, as
a consequence, the highest amount of SecA protein is reached at the
beginning of the period of elevated secretion activity. This implies
that the amount of SecA protein synthesized up to this point is
sufficient to ensure effective protein translocation during the entire
high-level secretion period. Besides its role as a membrane-associated
energy-coupling subunit of preprotein translocase, SecA can most likely
in its soluble form (6, 22), interact also with precursor
proteins occurring free in the cytosol (45). One might
speculate that the high amount of SecA at the beginning of the
high-level secretion period can function as a kind of a secretory
protein-specific chaperone buffer which helps to maintain the massive
amounts of precursor proteins in an export-competent state for their
subsequent membrane translocation.
In E. coli, secA expression is coupled to the
secretion status of the cell by an autoregulatory mechanism
(30). Under normal protein export conditions, excess SecA
binds to its own mRNA, thereby autorepressing its translation. Under
conditions of limiting protein export, the mRNA-bound SecA is released
(possibly by a titration mechanism) and translation of secA
mRNA increases 10- to 20-fold (23, 35, 40). So far, we have
found no evidence for a comparable autoregulation of secA
expression in B. subtilis. High-level expression of a
secretory protein (
-amylase AmyL of B. licheniformis) in B. subtilis, resulting in the
massive accumulation of AmyL precursor in the cytosol, did not lead to
an increase in the amount of SecA protein (13). Furthermore,
overexpression of SecA in B. subtilis DB104, containing
a translational orf189-secA-lacZ fusion integrated in the
amy locus, did not result in a reduced expression of
-galactosidase activity (13). However, since these
observations are negative evidence, the existence of an autoregulatory
mechanism for secA expression in B. subtilis
cannot be totally excluded.
Very little is known about the regulation of other components of the
B. subtilis preprotein translocase. Li et al.
(19) have shown that the B. subtilis secY
gene, which is located within the S10-spc-
region and
encodes one of the central integral membrane components of the
translocase, is primarily cotranscribed within one large (15-kb)
transcriptional unit together with the other (mostly ribosomal) genes
of the S10-spc-
region and that this transcription is
driven by two
A-dependent promoters located upstream of
the S10 gene. In addition, Suh et al. (44)
identified two weak promoter-active regions located within the two
genes immediately upstream of secY, which are able to
stimulate transcription of a lacZ reporter gene mainly in
the stationary growth phase. However, it is unclear whether these weak
promoter sequences significantly contribute to secY gene
expression in the stationary growth phase. Furthermore, since stable
integration of SecY into the cytoplasmic membrane, at least in E. coli, requires a concomitant coexpression of SecE (21), it is also unclear whether the weak transcriptional activity of these
potential secY promoter sequences in the stationary growth phase would in fact result in a significantly elevated level of SecY
protein in the plasma membrane.
Recently, Bolhuis et al. cloned the secDF gene of B. subtilis and analyzed its expression during growth in different media, using a transcriptional secDF-lacZ fusion (3). Whereas secDF expression was more or less constitutive when the cells were grown in minimal medium, a maximum of secDF transcription was found in the early post-exponential growth phase when rich (TY) medium was used for growth. Interestingly, the time point of maximum secDF expression in rich medium is 1 to 2 h later in the growth phase compared to the time point of maximum secA expression.
B. subtilis contains at least four closely related type I signal peptidases (SipS, SipT, SipU, and SipV) which are responsible for the removal of the signal peptides from nonlipoprotein precursor proteins (48). Whereas the sipU and sipV genes are transcribed at a more or less constant level during all growth phases, the transcription of sipS and sipT increases upon transition from exponential to stationary growth. Due to their finding that the increase in sipS and sipT transcription is controlled by the DegU-DegS two-component signal transduction system, which is mainly involved in the upregulation of the synthesis of secreted precursor proteins after T0, the authors (48) speculate that SipS and SipT serve to increase the capacity of B. subtilis for protein secretion concomitantly with the increasing amounts of secretory precursor proteins synthesized in the post-exponential growth phase. Interestingly, in contrast to secA gene expression, which is maximal at the beginning of the secretion period (approximately T0), sipS and sipT transcription is relatively low at T0 and increases steadily throughout the entire period of high-level protein secretion after T0 (48). These findings taken together suggest that at the post-exponential growth phase, B. subtilis adjusts the amount of some of the central components of the protein secretion machinery in relation to the increased demand for protein export. However, differences in the timing of this adjustment seem to exist between different components.
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ACKNOWLEDGMENTS |
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We are very grateful to R. Brückner and K.-L. Schimz for their kind gifts of plasmids and antibodies. We thank H. Sahm for continuous support and A. Bida for technical assistance. Furthermore, we thank the members of the European Bacillus Secretion Group, especially J. M. van Dijl, A. Bolhuis, M. Klose, and J. Meens, for stimulating discussions.
This work was supported by grants from the BMBF and the CEC (biotech grant BIO4-CT96-0097).
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FOOTNOTES |
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* Corresponding author. Mailing address: Institut für Biotechnologie 1, Forschungszentrum Jülich GmbH, D-52425 Jülich, Germany. Phone: (49) 2461-613472. Fax: (49) 2461-612710. E-mail: r.freudl{at}fzjuelich.de.
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