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Journal of Bacteriology, October 1999, p. 6238-6246, Vol. 181, No. 20
0021-9193/99/$04.00+0
Copyright © 1999, American Society for Microbiology. All rights reserved.
Genetic and Biochemical Characterization of a High-Affinity
Betaine Uptake System (BusA) in Lactococcus lactis
Reveals a New Functional Organization within Bacterial
ABC Transporters
David
Obis,1
Alain
Guillot,1
Jean-Claude
Gripon,1
Pierre
Renault,2
Alexander
Bolotin,2 and
Michel-Yves
Mistou1,*
Unité de Biochimie et Structure des
Protéines1 and Unité de
Génétique Microbienne,2 Institut
National de la Recherche Agronomique, 78352 Jouy-en-Josas Cedex, France
Received 20 April 1999/Accepted 30 July 1999
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ABSTRACT |
The cytoplasmic accumulation of exogenous betaine stimulates the
growth of Lactococcus lactis cultivated under hyperosmotic conditions. We report that L. lactis possesses a single
betaine transport system that belongs to the ATP-binding cassette
(ABC) superfamily of transporters. Through transposon mutagenesis,
a mutant deficient in betaine transport was isolated. We
identified two genes, busAA and busAB, grouped
in an operon, busA (betaine uptake system).
The transcription of busA is strongly regulated by the
external osmolality of the medium. The busAA gene codes for
the ATP-binding protein. busAB encodes a 573-residue
polypeptide which presents two striking features: (i) a fusion between
the regions encoding the transmembrane domain (TMD) and the
substrate-binding domain (SBD) and (ii) a swapping of the SBD
subdomains when compared to the Bacillus subtilis
betaine-binding protein, OpuAC. BusA of L. lactis displays
a high affinity towards betaine (Km = 1.7 µM)
and is an osmosensor whose activity is tightly regulated by external
osmolality, leading the betaine uptake capacity of
L. lactis to be under dual control at the biochemical and
genetic levels. A protein presenting the characteristics
predicted for BusAB was detected in the membrane fraction of L. lactis. The fusion between the TMD and the SBD is the first
example of a new organization within prokaryotic ABC transporters.
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INTRODUCTION |
As a consequence of the permeability
of biological membranes to water, the active adaptation to osmotic
changes of the external medium is essential for the maintenance of
homeostasis which characterizes living systems. In nonhalophilic
bacteria, the most efficient strategy to cope with hyperosmotic
conditions consists of the cytoplasmic accumulation of compatible
solutes. According to a recent definition, a compatible solute is a
"cytoplasmic cosolvent (solute) whose levels can be modulated over a
broad range without disrupting cellular function" (51). A
large set of organic molecules have been found to possess such a
property: they include sugars, amino acids and derivatives, tertiary
sulfonium compounds, tetrahydropyrimidines (ectoine), and quaternary
ammonium compounds (9). Betaine
(N,N,N-trimethylglycine) belongs to
the last chemical class. The accumulation of betaine upon an osmotic
upshift restores the cellular volume and increases the hydration of the
cytoplasm of Escherichia coli cells (6). Furthermore, this compound is excluded from the hydration shell of
proteins and stabilizes macromolecules against denaturation through its
ability to increase water structure (kosmotrope) (3, 9, 51).
These properties make betaine one of the most potent and universally
compatible solutes that are used by eukaryotic organisms, archea, and
many bacterial species (10, 35). The de novo synthesis of
betaine occurs rarely among microorganisms, which have evolved highly
efficient osmodependent transport systems dedicated to its accumulation.
The mechanisms of adaptation to hyperosmolality through compatible
solute uptake has been extensively studied in E. coli and Salmonella typhimurium, and the data accumulated on these
model organisms furnish the basic concepts of osmoadaptation in
bacteria (7). Two uptake systems have been described as
being responsible for the accumulation of organic compatible solutes: a
secondary transporter, ProP, of relatively broad specificity (proline
and betaine) and a high-affinity betaine uptake system, ProU, which belongs to the superfamily of ATP-binding cassette (ABC) transporters. The activity of these two transporters is modulated by the external osmolality (8, 38) and the expression of proU
increased upon osmotic upshift (26).
Recent studies extended our knowledge of osmoadaptation to
gram-positive organisms, and the description of osmodependent uptake capacities for compatible solutes has been accomplished at the molecular level in Bacillus subtilis and
Corynebacterium glutamicum. B. subtilis was found to possess
four compatible solute uptake systems. OpuA (betaine and related
compounds) and OpuC (betaine and ectoine) are ABC-type transport
systems (15, 18), while OpuD (betaine) and OpuE (proline)
are secondary transporters (17, 49). In C. glutamicum, three secondary transporters have been identified and
characterized: BetP (betaine) and EctP (ectoine, betaine, and proline)
are sodium-solute symporters, and ProP (proline and ectoine), a member
of the major facilitator superfamily, is an H+-compatible
solute cotransporter (31, 32). These transport systems
provide these soil organisms with a large osmoadaptation capacity.
We aimed to characterize the osmoadaptive capacity of Lactococcus
lactis, a low-GC-content gram-positive organism originating from a
different ecological habitat. Dairy products are the main origin of the
presently known biodiversity of the genus Lactococcus, while
plant materials could represent its natural source (41). In
both industrial and natural environments, L. lactis
encounters osmotic challenges. A previous study reported that the ML3
strain of L. lactis accumulated betaine under hyperosmotic
conditions but, intriguingly, the transport system was not found to be
induced or activated by the medium osmolality (29).
In the present work, we focused our attention on the betaine uptake
capacity of L. lactis NCDO763. We report the
characterization of busA, the operon coding for the single
high-affinity betaine transport system of L. lactis. The
betaine transport capacity of L. lactis was found to be
regulated at both the biochemical and genetic levels. Sequence analysis
revealed that BusA belongs to the ABC transporter superfamily, but a
striking genetic organization was observed: the regions encoding
transmembrane- and betaine-binding domains are fused in a single
gene. The biochemical consequences of such a feature are discussed.
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MATERIALS AND METHODS |
Bacterial strains, media, culture conditions, and chemicals.
E. coli TG1 supE hsd
5 thi
(lac-proAB) F' (traD36 proAB+
lacIq lacZ
M15) and TG1rep
(containing a chromosomal copy of the repA gene) were grown
on Luria-Bertani medium (LB) with shaking at 37°C (28).
Erythromycin (Em) (150 µg/ml) was added when required. B. subtilis JH642 was grown on LB or LB plus 0.5 M NaCl at 37°C with shaking. L. lactis subsp. cremoris NCDO763
was grown at 30°C in M17 (44) with 0.5% (wt/vol) glucose
or in chemically defined medium (CDM) containing vitamins, salts,
nucleotides, sodium phosphate buffer (pH 6.5), amino acids, and 0.5%
glucose (wt/vol) as described previously (29), except for
the presence of cysteine (0.17 g/liter) and the absence of proline
unless indicated. When required, CDM was supplemented with 1 mM betaine
(0.117 g/liter) or 5.9 mM proline (0.68 g/liter), and the osmolality of
the medium was raised by the addition of NaCl or sorbitol. All
solutions were sterilized by filtration. Growth rate experiments were
performed with a Microbiology Reader Bioscreen C (Labsystems, Helsinki,
Finland) in 100-well sterile microplates, each well containing 300 µl
of culture medium. The optical density was monitored at 600 nm
(OD600). The osmolality levels of the solutions and media
were measured by freezing-point depression with a digital
micro-osmometer (Hermann Roebling, Berlin, Germany). Betaine and
sorbitol were from Sigma (St. Louis, Mo.). Ectoine was from Bitop
(Witten, Germany). [1-14C]betaine (specific activity, 55 mCi/mmol) was purchased from Isotopchim (Ganagobie-Peyruis, France).
DNA manipulations.
Plasmid DNA manipulation and
transformation of E. coli TG1 and TG1rep were
performed as previously described (40). L. lactis NCDO763 was transformed by electroporation (22). PCR
amplifications were performed on 0.1 µg of chromosomal DNA of NCDO763
by using Taq polymerase (Appligene Oncor, Illkirch, France)
and a GeneAmp PCR system 2400 (Perkin Elmer Corp., Norwalk, Conn.). The
DyeTerminator kit and a 310 Genetic Analyzer (Applied Biosystems,
Foster City, Calif.) were used for DNA sequencing.
Insertional mutagenesis and selection of an osmosensitive
mutant.
Insertional mutagenesis with pGh9:ISS1
(Emr) in L. lactis NCDO763 was performed as
described earlier (27). pGh9:ISS1 transposants were selected at 37°C on M17 plates containing 0.5% glucose and 1 µg of Em per ml. The transposition frequency was found to be 3 · 10
3. Southern hybridization analysis of 12 Emr clones indicated that transposition occurred randomly
and that 9 of them (75%) were monocopy transposition events. We
identified osmosensitive mutants by their inability to grow on replica
CDM plates (1.5% [wt/vol] agar) containing 0.6 M NaCl and 1 mM
betaine. The screening of 5,000 transposants led to the isolation of 42 osmosensitive mutants, including the betaine uptake-deficient mutant
OSM35. To isolate the stable mutant OSM35 (Ems), the
integrated vector was excised as described earlier (27). A
single transposition event and plasmid excision were confirmed by
Southern hybridization analysis.
Cloning and sequencing of busA.
Chromosomal sequences
upstream and downstream of the inserted plasmid pGh9:ISS1
were recovered by plasmid rescue. OSM35 genomic DNA was digested with
PstI or HindIII, and ligated DNA was
transformed in E. coli TG1rep. This procedure
permitted the isolation of chromosomal L. lactis DNA
fragments of 3 and 0.3 kb upstream and downstream of the
pGh9:ISS1 insertion, respectively. L. lactis
NCDO763 DNA fragments were sequenced with oligonucleotide primers
designed in the transposon. Data of the diagnostic sequence of the
genome of L. lactis subsp. lactis IL1403 were
used to design a primer in the 3' part of the operon (4).
After the sequencing of PCR products, a pair of oligonucleotide
primers, OSM-17 (GTT GTT GCA ATT TTA CAG AAT GAA G) and OSM-3446 (TCA
CTG AGA TTT TCT TAG TTA ACT C), were designed for PCR amplification of
the whole region. PCR amplification gave rise to a unique band of 3.4 kb (cycling conditions: 94°C for 1 min, 62°C for 1 min, and 72°C
for 3 min 30 s for 30 cycles). The purified PCR product was cloned
into pGEM-T Easy vector (Promega Corp., Madison, Wis.) and amplified in
E. coli TG1. Sequence data were confirmed on two independent clones sequenced on both strands.
Site-directed inactivation of busA.
busA
disruption mutation was independently reconstructed through plasmid
integration. A 0.98-kb fragment (positions 586 to 1564) of
busAA was cloned into the KpnI site of the
integrative vector pORInewlux (Emr) (39), a
derivative of pORI5 (23). The resulting construction, pTIL451, was used to transform L. lactis NCDO763.
Emr transformants, which harbored a chromosomal copy of
pTIL451, were obtained. The disruption of the busA operon,
located after codon 81 of busAA, was verified by PCR
amplification and Southern hybridization, and a single strain
designated TIL451 was selected. TIL451 and OSM35 displayed the same
phenotype, and TIL451 was deficient in betaine transport capacity.
Northern blot analysis.
L. lactis NCDO763 was grown in
M17 containing 0.5% glucose at 30°C up to an OD600 of
0.5. The culture was split into two aliquots of 35 ml, and 5 ml of
either water or 2.4 M NaCl (0.3 M, final concentration) was added.
After a further incubation of 40 min at 30°C, total RNA was isolated
(2). Then, 10 µg of RNA denatured by the addition of
glyoxal was separated on a 1% agarose gel and transferred to a
Hybond-N+ membrane (Amersham, Uppsala, Sweden). The
membrane was probed with the oligonucleotide EXT1 (GTT CAA TTT TGA CTT
TTA CTG GCA) labeled with [
-32P]ATP by using T4 kinase
(Gibco/BRL, Eggenstein, Germany) (40). Washing and
autoradiography were performed under standard conditions (40).
Preparation of membrane fractions.
L. lactis cells
were grown in M17 without or with 0.3 M NaCl up to an OD600
of 1. Cells were harvested by centrifugation at 5,000 × g for 10 min and washed twice with 25 mM Tris-HCl (pH 8.0).
The cell pellet was resuspended in 25 mM Tris-HCl (pH 8.0) at a final
OD600 of 10. The cells were disrupted with a cell disrupter at a pressure of 2,700 bars (Constant Systems Ltd., Kenilworth, United
Kingdom). The homogenate was centrifuged at 5,000 × g
for 15 min to remove unbroken cells. The supernatant was subjected to
ultracentrifugation at 100,000 × g for 1 h. The
pellet corresponding to the membrane fraction was resuspended at a
protein concentration of 2 to 4 mg/ml in 25 mM Tris-HCl (pH 8.0) and
stored at
20°C until use. Total cell extracts of B. subtilis JH642 were prepared as described earlier (18).
Electrophoresis and Western blotting.
To allow the
solubilization of the membrane proteins before electrophoresis, 30 µg
of protein was resuspended in 20 µl of 25 mM Tris-HCl (pH 8.0)-1%
Triton X-100 containing 1 mM phenylmethylsulfonyl fluoride and
incubated for 3 h at room temperature. Then, 20 µl of
twice-concentrated sample buffer (4 M urea, 2% sodium dodecyl sulfate
[SDS], 0.02% Coomassie blue, and 10% glycerol) was added. Samples
were applied onto a SDS-polyacrylamide gel (3.5%-12.5%) (21), and electrophoresis was performed by using a Bio-Rad
Miniprotean II cell (Bio-Rad Laboratories, Ltd., Hercules, Calif.).
Proteins were then transferred onto a 0.45-µm-pore-size
nitrocellulose membrane (BA85; Schleicher & Schuell) in ice-cold
transfer buffer (25 mM Tris; 192 mM glycine; 20% [vol/vol] methanol;
0.02% [wt/vol] SDS, pH 8.3) at 80 mA of constant current for 2 h. The membrane was blocked for 1 h at room temperature in 10 ml
of PLT (10 mM sodium phosphate, pH 7.4; 145 mM NaCl; 0.2% Tween 20;
3% low-fat milk) and incubated for 1 h at room temperature with a
1:5,000 dilution of a rabbit antiserum raised against the purified
OpuAC protein from B. subtilis (19). The membrane
was washed twice for 10 min with 10 ml of PLT and incubated with 2 µl
of horseradish peroxidase-coupled second goat anti-rabbit antibody
(1:5,000, final dilution) (Bio-Rad) in 10 ml of phosphate-buffered
saline (PBS; 10 mM sodium phosphate, pH 7.4; 145 mM NaCl) for 1 h.
The membrane was washed twice in PBS for 5 min. Detection of the formed complexes was accomplished with the Bio-Rad Opti-4CN substrate kit. A
Bio-Rad prestained SDS-polyacrylamide gel electrophoresis (PAGE)
standard was used as a molecular weight marker.
Analysis and quantification of accumulated amino acids and
betaine.
Cells were grown to exponential phase in CDM with the
indicated additives. Samples (2 to 4 ml) corresponding to 1 mg of
protein were filtered through 0.45-µm-pore-size prewetted cellulose
acetate filters (MillexHA; Millipore, Bedford, Mass.) by using a vacuum manifold 1225 connected to a vacuum pump (
600 mm Hg). Immediately after filtration, filters were washed with 5 ml of 200 mM sodium phosphate buffer with 0.5% glucose (pH 6.5), isoosmotic to CDM and
complemented with NaCl at a final osmolality corresponding to that of
the growth medium. Filters were extensively dried and resuspended in
0.4 ml of HCl at 4 mM. Volumes of 0.3 ml were withdrawn and briefly
centrifuged to remove unbound cells. Supernatants (0.25 ml) were used
for either betaine or amino acid analysis. For the analysis and
quantification of amino acids, samples were diluted 1/1 in 0.16 N
lithium acetate buffer (pH 2.2), and 50 µl was injected onto an amino
acid analyzer, the Biotronix LC 3000 (Biotronik, Hamburg, Germany).
Betaine was quantified by high-pressure liquid chromatography (HPLC)
analysis on a Waters system (Milford). Then, 50 µl of the supernatant
was injected into a strong cation-exchanger column (Protein-Pak SP 8HR,
100 by 5 mm; Waters). The sample elution was isocratic in HCl at 4 mM
at a flow rate of 0.8 ml/min at 40°C. UV detection was performed at
195 nm, and betaine was found to elute at a retention time of 11 min
(capacity factor, k' = 4.8). Quantification was obtained from a standard curve. This method was also used to assess the absence
of betaine in sorbitol solutions. Alternatively, intracellular accumulation of betaine was measured by filtration experiments on cells
grown in the presence of [1-14C]betaine (1 mM; specific
activity, 0.1 mCi/mmol). Cells (3 OD600 U, equivalent to
0.6 mg of protein) were harvested during the culture and immediately
filtered as described above. Filters were immediately washed with 5 ml
of isoosmotic buffer and then dried, and the radioactivity was counted
by liquid scintillation. Both methods were found to give the same results.
Betaine transport assays.
Cells were grown in CDM with
additives (NaCl, sorbitol, betaine, and proline) as indicated in the
legends to the figures. Cells were harvested in exponential phase
(OD600 = 0.8 to 1) by centrifugation and washed twice
in 0.12 osM hypotonic buffer, 50 mM MES
[2-(N-morpholino)ethanesulfonic acid]-NaOH (pH 6.5), at
4°C and containing 0.5% (wt/vol) glucose, which was present in all
further steps. The presence of a metabolizable carbon source (glucose
or lactose) was found to be essential for the betaine transport
activity. Cells were resuspended at a protein concentration of 0.6 to 1 mg/ml in the same buffer and kept on ice. Prior to transport
experiments, the cells were diluted (0.04 to 0.1 mg of protein per ml)
in the same buffer containing chloramphenicol (50 µg/ml). Cells were
preincubated at 30°C for 5 min. Transport was initiated by the
addition of [1-14C]betaine simultaneously with NaCl or
sorbitol. In uptake experiments to equilibrium,
[1-14C]betaine was added at 0.5 mM (0.25 mCi/mmol), and
150-µl portions were withdrawn at the indicated time intervals. For
the determinations of initial rates of uptake,
[1-14C]betaine was added at a final concentration of 20 µM (2.5 mCi/mmol), and aliquots of 500 µl were filtered at time
intervals of 1 min. The rate of betaine uptake was linear for 4 min.
For Km determination experiments, the final
[1-14C]betaine concentration ranged from 0.2 to 50 µM
(2.5 to 55 mCi/mmol). In all experiments, filters were immediately
washed after filtration with 5 ml of the corresponding assay buffer and
dried, and the radioactivity associated was counted by liquid
scintillation. Initial rates of betaine uptake were nonlinearly fitted
to the Michaelis-Menten equation with the computer package SigmaPlot 3.0 (Jandel Scientific).
Miscellaneous.
Protein concentrations were determined by the
method of Lowry et al. (25) with bovine serum albumin as a standard.
Sequence analysis was performed by using the Wisconsin Package, version
9.1 (Genetics Computer Group, Madison, Wis.). For sequence similarity
searches in unfinished microbial genomes, the NCBI BLAST program with
microbial genomes page was used (1, 29a). Sequence
alignments were performed with CLUSTAL W (1.5) (45) and
drawn with GeneDoc, version 2.5.0 (30).
Nucleotide sequence accession number.
The nucleotide
sequence data reported here have been submitted to GenBank under
accession number AF139575.
 |
RESULTS |
Osmoprotective properties of betaine in L. lactis.
The growth of the proline prototroph strain L. lactis NCDO763 under hyperosmotic constraint was studied in CDM in
the absence of proline. Figure 1 reports
the maximal growth rates in a range of osmolality from 0.32 to 2.1 osM
obtained by the addition of NaCl. In the absence of betaine, the growth
rate declined sharply at concentrations greater than 0.1 M NaCl and
growth was totally inhibited in the presence of 0.8 M NaCl. When the
medium was supplemented with 1 mM betaine, the growth rate was restored
to a normal level at up to 0.3 M NaCl (1.1 osM), and the compatible
solute extended the osmotic range of growth to at least 0.9 M NaCl (2.1 osM). The same beneficial effect was also observed with 10 µM betaine (data not shown).

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FIG. 1.
Effect of increased osmolality on the growth rates of
L. lactis NCDO763. Cells were grown in CDM without ( ) or
with ( ) 1 mM betaine. The osmolality was increased by the addition
of NaCl. The inset shows a growth curve ( ) in CDM containing 0.3 M
NaCl and 1 mM betaine, and the intracellular betaine content ( ) was
measured by HPLC analysis at different times.
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HPLC analysis of the cytoplasmic content indicated that the amount of
betaine accumulated remained constant from exponential
phase to
stationary phase (OD
600 = 0.3 to 2) (inset, Fig.
1).
The amount of cytoplasmic betaine was found to be dependent upon
the
osmolality of the growth medium, rising from 520 to 2,000
nmol/mg of
protein at between 0.3 and 0.6 M NaCl (data not shown).
It has
been previously reported that betaine does not confer osmotic
tolerance on
Lactobacillus plantarum or
L. lactis
when the bacteria
are challenged with nonionic solutes (
13,
29). This observation
was confirmed for
L. lactis
NCDO763 grown in the presence of sorbitol.
Betaine was found to
be accumulated in these conditions but at
levels that were consistently
lower than those measured in the
presence of NaCl at the same
osmolality (data not shown). Ectoine,
carnitine, taurine, and the
betaine precursor choline were tested
for their possible
protective properties. None of them conferred
any osmotolerance on
L. lactis cultivated in the presence of salts
or nonionic
solutes (data not shown). These data suggest the existence
of an
osmodependent betaine transport system, which we undertook
to
characterize at the genetic
level.
Identification of a mutant deficient in betaine transport.
To
characterize the betaine transport system(s) of L. lactis,
we constructed a library of transposon mutants, which were
screened for their inability to grow on CDM-NaCl agar plates containing betaine (see Materials and Methods). An osmosensitive mutant
obtained by insertion of the ISS1 element was isolated and
called OSM35. The growth capacity of OSM35 was examined in liquid CDM
under the range of osmolalities tested for the wild-type strain. Figure 2 displays the growth curves of wild-type
and OSM35 cells in three osmotic conditions. In the absence of osmotic
challenge, OSM35 was barely distinguishable from the wild type. At 0.3 M NaCl in the absence of betaine, OSM35 was found to possess a slightly better growth capacity than the wild type (µ = 0.51 versus 0.43 h
1). The most noticeable property of OSM35 was its
inability to take advantage of the presence of betaine. A deficiency of
the betaine uptake system(s) was the most probable explanation for such
a phenotype. We tested this hypothesis by measuring the betaine uptake
activity of whole cells cultivated under osmotic constraint (Figure
3). A strong energy-dependent betaine
uptake activity, measurable in the presence of NaCl or sorbitol was
detected for wild-type cells. No betaine uptake activity was detectable
for OSM35 cells. This result confirmed that the lack of growth
stimulation by betaine in the mutant was due to the abolition of its
transport capacities.

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FIG. 2.
Comparison of the growth curves of L. lactis
NCDO763 wild-type and OSM35 cells. Wild-type (A) and OSM35 (B) cells
were grown at 30°C in CDM ( ), CDM plus 0.3 M NaCl ( ), CDM plus
0.3 M NaCl and 1 mM betaine ( ), CDM plus 0.6 M NaCl ( ), or CDM
plus 0.6 M NaCl and 1 mM betaine ( ).
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FIG. 3.
Betaine uptake activity in L. lactis NCDO763.
Wild-type (circles) and OSM35 (triangles) cells were grown in CDM
containing 0.3 M NaCl (solid) or 0.45 M sorbitol (open) supplemented
with 1 mM betaine. Cells were washed and resuspended in 50 mM MES-NaOH
(pH 6.5) containing 0.5% glucose and 50 µg of chloramphenicol per
ml. After 5 min of preincubation at 30°C, uptake was initiated by the
addition of [1-14C]betaine (final concentration, 0.5 mM)
and 0.3 M NaCl (solid) or 0.45 M sorbitol (open) (final
concentrations).
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Sequence analysis of busA coding for the betaine uptake
system of L. lactis.
The complete nucleotide sequence of a
3.4-kb DNA fragment from L. lactis NCDO763 corresponding to
the chromosome regions surrounding the transposon integration site in
OSM35 was determined after plasmid rescue and with the help of the
diagnostic sequence of L. lactis IL1403 (4).
Sequence analysis revealed two open reading frames (ORFs), named
busAA and busAB for betaine uptake system. The
genetic organization of the busA genes was identical in
L. lactis NCDO763 and IL1403 strains, which share
86.7% identity at the nucleotide level. The first ORF,
busAA, codes for a putative protein 407 residues in length
and was likely to start with a TTG initiation codon. The
ISS1 insertion site was found in this ORF. The second ORF,
busAB, is oriented in the same direction. It potentially
encodes a polypeptide of 573 residues. The first codons of
busAB overlap the last two codons of busAA.
Twenty nucleotides downstream of the stop codon of busAB, a
15-nucleotide inverted repeat (
G =
15.6 kCal/mol) could be
used as a rho-independent terminator. Altogether, these data suggest
that busAA and busAB constitute an operon. To
verify that the sole busA inactivation was responsible of
the OSM35 phenotype, directed disruption was performed. The
resulting mutant, TIL451, exhibited the same phenotype as OSM35 (data
not shown; see Materials and Methods). BusAA (407 amino acids;
Mr, 45,679) shared strong similarities with the
ATP-binding proteins OpuAA (417 amino acids) and ProV (400 amino acids) of the high-affinity betaine ABC transporters
B. subtilis OpuA and E. coli ProU, respectively.
The sequence alignment of the three proteins was straightforward, with
the L. lactis and B. subtilis proteins showing
56% identical amino acids.
BusAB (573 amino acids;
Mr, 61,996), the protein
encoded by the second ORF of
busA, presents a surprising
organization. It
is composed of a hydrophobic N-terminal part and a
hydrophilic
C-terminal part, which correspond to two functional
domains, expressed
as distinct polypeptides in the prokaryotic ABC
transporters characterized
so far. The C-terminal part of BusAB,
probably corresponding to
the substrate-binding domain (SBD), showed
significant similarity
to the betaine-binding protein of
B. subtilis, OpuAC (Fig.
4).
However,
the subdomain organization was inverted: residues 313
to 423 of BusAB
aligned with residues 163 to 273 of OpuAC (43%
identity; Fig.
4B), and
residues 424 to 573 of BusAB aligned with
residues 1 to 162 of OpuAC
(45% identity; Fig.
4A). The 282 N-terminal
residues of BusAB can be
aligned with OpuAB and ProW, the transmembrane
components of the
high-affinity betaine ABC transporters of
B. subtilis and
E. coli, respectively. The hydrophobic profile of
the
N-terminal domain of BusAB displayed striking similarity to
OpuAB and
ProW, which is a seven-membrane-spanning segment permease
(
14) (Fig.
5A). Interestingly,
in the region encompassing residues
295 to 315 of BusAB, an additional
potential membrane-spanning
segment was detected, which linked the
transmembrane N-terminal
domain (TMD) to its hydrophilic C-terminal
part (residues 316
to 573) (Fig.
5A). The protein organization of BusA
is summarized
Fig.
5B and is compared with that of OpuA, the
high-affinity betaine
ABC transporter of
B. subtilis.

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FIG. 4.
(A) Alignment of the substrate-binding domain of BusAB
(residues 288 to 573) with the N-terminal part of pro-OpuAC (residues 1 to 182). (B) Alignment of the substrate-binding domain of BusAB
(residues 288 to 573) with the C-terminal part of mature OpuAC
(residues 163 to 273) of B. subtilis.
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FIG. 5.
(A) Hydropathy plot of the transmembrane components of
ProW of E. coli, OpuAB of B. subtilis, and BusAB
of L. lactis NCDO763. The hydrophobicity scale is that of
Kyte and Doolittle (20). The profile was obtained with a
window of seven residues. The hydrophobicity profiles of ProW, OpuAB,
and BusAB were superimposed on the basis of the aligned proteins. The
numbering is that of BusAB. (B) Schematic organization of the
polypeptides encoded by busA and comparison with those of
opuA of B. subtilis. Regions presenting high
similarity scores are filled identically (see the text).
|
|
The biochemical and genetic data indicated that the osmosensitive
phenotype of OSM35 was the consequence of the inactivation
of a gene
coding for a betaine ABC transporter presenting a new
modular
arrangement. The complete abolition of betaine transport
in OSM35
strongly suggested that
L. lactis NCDO763 possesses
only
one osmoregulated betaine transport
system.
Expression of busA is under osmotic control.
The
expression of busA and its induction in response to an
osmotic upshock was examined by Northern analysis. RNA extracted from L. lactis NCDO763 cells grown without or
after a 40-min osmotic upshift were probed with an oligonucleotide
corresponding to a 5' coding segment of busA. A band
corresponding to a 3-kb transcript was detected only on RNA issued from
osmotically shocked cells (Fig. 6, lane
2). An overexposition of the membrane revealed a band of similar size
in lane 1, indicating that a weak expression of busA exists
in cells growing at low osmolality (0.32 osM) (data not shown). This
result confirmed that the busAA and busAB genes are organized in an operon whose expression is under osmotic control.

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FIG. 6.
Induction of the expression of busA in
response to osmotic upshock. RNA was isolated from wild-type cells
grown on M17 glucose (lane 1) or M17 glucose containing 0.3 M NaCl
(lane 2). After electrophoresis, the RNA was transferred to a membrane
and probed with a busA-specific oligonucleotide probe. The
size of the transcript is indicated.
|
|
Immunodetection of BusAB in the membrane fraction of L. lactis.
From the nucleotide sequence, BusAB is expected to be
composed of an integral membrane domain fused to a hydrophilic domain homologous to the betaine-binding protein of B. subtilis, OpuAC. The presence of BusAB in the membrane fractions
and whole cell extracts of L. lactis was verified by
immunodetection by using polyclonal antibodies raised against the OpuAC
protein of B. subtilis (19). Western blotting
revealed the OpuAC protein with the expected size (ca. 30 kDa) in the
control experiment performed on B. subtilis extracts, while
a 55-kDa band was detected in the membrane fraction of L. lactis (Fig. 7). The observed
molecular mass of 55 kDa was consistent with the predicted value of 62 kDa, as it has been widely observed that membrane proteins display an
anomalous rapid migration during SDS-PAGE (36, 38). Since we
did not find any evidence for an isolated SBD, these experiments show
that BusAB is present in the membrane as a fusion between the TMD and the SBD and that no cleavage of the protein occurred during or after membrane translocation. It should be noted that, under the conditions tested, the amount of protein detected was not significantly increased in cells cultivated at high osmolality.

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FIG. 7.
Western blotting of BusAB and OpuAC proteins. Proteins
were separated by SDS-PAGE (12.5% polyacrylamide) and transferred to a
nitrocellulose membrane. Shown are proteins of the membrane fractions
of L. lactis cells grown in M17 (lanes 1) or in M17
containing 0.3 M NaCl (lane 2) and proteins from whole-cell extracts of
B. subtilis JH642 obtained after growth on LB (lane 4) or LB
containing 0.5 M NaCl (lane 5). BusAB and OpuAC were detected with an
antiserum against the purified OpuAC protein of B. subtilis
JH642. The molecular mass marker was from Bio-Rad (lanes S).
|
|
BusA is an osmosensor.
It has been widely observed that the
activity of compatible solute transport systems can be modulated by the
osmotic pressure independently of de novo protein synthesis
(33). This phenomenon, called activation, is a property of
high-affinity betaine ABC transporters characterized to date (5,
8, 11). The activation of BusA was investigated on cells grown in
CDM (unadapted cells) or CDM plus 0.3 M NaCl and betaine (adapted
cells). The initial rates of betaine uptake were measured in the
presence of chloramphenicol, and the osmolality of the assay buffer was
increased by the addition of NaCl (Fig.
8). No net uptake could be measured at
0.12 osM, which corresponded to the osmolality of the assay buffer. The addition of 0.1 M NaCl (0.3 osM) triggered the uptake. At this osmolality, the initial rate was identical for cells cultivated at low
or high osmolality. The activity of BusA increased further with the
osmolality of the assay buffer and reached a maximum in the presence of
0.4 M NaCl (0.84 osM). At between 0.1 and 0.4 M NaCl, the betaine
uptake rate increased 6-fold for cells grown in CDM, while the
activation reached 35-fold for cells adapted to the osmolality. The
presence of a betaine transport capacity in cells grown in CDM
confirmed that BusA was synthesized at a basal level in L. lactis, a result in agreement with Northern blot and
immunodetection experiments. We also observed that the activation of
BusA was obtained to a similar extent by raising the osmolality with a
nonionic solute (data not shown). Altogether, these results indicated
that the activity of BusA was regulated by the external osmolality.

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FIG. 8.
Activation of the betaine uptake system in L. lactis NCDO763 as a function of NaCl concentration. Wild-type
cells were grown in CDM ( ) or CDM-0.3 M NaCl ( ) containing 1 mM
betaine. Cells were harvested (OD600 = 1 to 1.5),
washed twice, and resuspended in 50 mM MES-NaOH (pH 6.5) containing
0.5% glucose and 50 µg of chloramphenicol per ml. After 5 min of
preincubation at 30°C, uptake was initiated by the addition of 20 µM [1-14C]betaine (specific activity, 2.5 mCi/mmol),
and NaCl final concentrations and initial rates of betaine uptake were
determined as indicated.
|
|
Transport parameters of BusA.
The presence of BusA as the sole
betaine transport system in L. lactis facilitated the
determination of its transport parameters. The initial rates of betaine
transport have been measured over a range of substrate concentrations
(0.2 to 50 µM) with cells grown in CDM or CDM-0.3 M NaCl (see
Materials and Methods). Transport assays were performed in the presence
of 0.3 M NaCl. For both kinds of experiments, the saturation curve was
monophasic and was found to obey the Michaelis-Menten equation. The
Kms were 1.7 ± 0.3 and 1.65 ± 0.4 µM for adapted and nonadapted cells, respectively. The maximal
velocity measured in these conditions for adapted cells was
approximately fivefold higher than for unadapted cells (29 versus 5 nmol/min/mg of protein). The similarity between the
Kms was consistent with the idea that the
osmodependent betaine uptake capacity of L. lactis NCDO763
is dependent upon the activity of a single, high-affinity transport system.
Osmodependent proline transport through BusA activity.
The
role of proline as a compatible solute has been established in
many microorganisms (7, 9). Proline can accumulate in the
cytoplasm by de novo synthesis like in B. subtilis
(50) or through the activity of uptake systems. In the
latter case, several betaine transporters were found to also display an
osmodependent proline transport activity (7, 9). However, it
was not possible to measure a [14C]proline uptake
activity by the filter-binding assay in L. lactis. To gain
evidence concerning the potential role of BusA as a proline uptake
system, we undertook a comparison of the growth properties of
wild-type and OSM35 strains in various media with or without proline
and then analyzed the cytoplasmic content of amino acids and betaine.
For this analysis, we took advantage of the observation made on
bacterial cells from various origins that hypoosmotic washes cause the
release of solutes accumulated during growth (12, 16, 46).
The growth-stimulatory property of proline on L. lactis
NCDO763 (Table 1, compare lines 1 and 3),
which was already reported for the ML3 strain (42), did not
allow us to firmly conclude the osmoprotective role of the amino acid. However, a large proline accumulation was found in wild-type cells grown under osmotic constraint. This accumulation was only observed in
the presence of the amino acid in the medium (Table 1, lines 2 and 4),
suggesting that an osmodependent transporter was responsible. On the
other hand, the addition of betaine to proline-containing media (line
6) abolished the proline accumulation and stimulated growth, confirming
the prominent role of betaine as a compatible solute in L. lactis. The amount of betaine accumulated was 2.7-fold in excess
over that measured for proline (lines 4 and 6), which could explain the
poor beneficial effect of the amino acid. The betaine content measured
by HPLC analysis on the same extracts was identical to that found by
the radioactive procedure (Fig. 1), indicating that the quaternary
amine compound was not further metabolized in the cell.
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|
TABLE 1.
Growth rates and proline, betaine, and total amino acid
contents of wild-type and OSM35 cells grown under
various conditionsa
|
|
Similar measurements were done for OSM35. As reported above, the mutant
cultivated under osmotic constraint in the absence
of proline or
betaine (Table
1, line 2) displayed a higher growth
rate than did the
wild type. This behavior was found to be associated
with an increase of
the total amino acid pool. Under these conditions,
it is possible that
the expression of
busA downregulates other
osmoadaptive
processes, such as the accumulation of a larger pool
of amino acids.
The most noticeable result, however, was the absence
of an
osmodependent proline accumulation in OSM35 (line 4). This
observation demonstrated unambiguously that BusA was also
responsible
for the osmodependent proline transport observed in the
wild-type
cells. The absence of a detectable proline uptake activity by
the filter-binding assay in wild-type cells was probably due to
the low affinity of the transporter for proline: a 1,000-times
excess
of proline (50 mM) over betaine in a competition experiment
did not
inhibit betaine uptake (not
shown).
 |
DISCUSSION |
In bacteria, the transport of compatible solute with a quaternary
ammonium group (betaine, choline, and carnitine) occurs through the
activity of either carrier-type transporters, which use energy of
chemiosmotic origin, or through ATP-dependent transporters (7,
51). In the present study we report that the betaine transport
capacity of L. lactis NCDO763 is linked to a single high-affinity ABC transporter, encoded by busA, an operon
composed of only two genes. The betaine transport capacity of L. lactis was found to be under osmotic control at both the genetic
and biochemical levels.
Betaine transport activity in L. lactis is triggered above
an osmolality threshold and is further stimulated by its increase. This
activation of betaine uptake is independent of de novo synthesis and
was demonstrated for secondary transport systems such as ProP or
BetP in E. coli and C. glutamicum,
respectively (32, 38), or ABC transporter-like ProU in
E. coli (8) or QacT in L. plantarum (11). The molecular mechanisms underlying this property are not yet understood. In theory, membrane-embedded osmodependent transport systems could be responsive to many osmotically driven changes of their environment such as altered membrane strain or osmotic
gradient (33, 51). Intriguingly, the activity of the betaine
transporter of L. lactis ML3 was reported not to be
osmotically controlled (29). However, in that study cells
were cultivated in complex media (containing an unknown amount of a
putative compatible solute) or in CDM containing proline.
trans inhibition or feedback regulation of the transport
systems by internalized substrate could explain the apparent lack of
activation (12, 34, 48).
Surprisingly, although the betaine transport activity was fivefold
higher in cells cultivated at 0.3 M NaCl, Western blot experiments did
not show a significant increase in the amount of BusAB in the membrane.
This observation suggests that, besides the transcriptional control
exerted by external osmolality on busA expression,
additional mechanisms are involved in the regulation of the transporter.
The final level of betaine accumulation in the presence of sorbitol was
lower than that measured with NaCl at the same osmolality (Fig. 3). In
L. plantarum, diffusion-controlled transport of sugar into
the cytoplasm counteracts the external osmotic pressure and prevents
betaine accumulation at a high level (13). Our results (Fig.
3), together with the lack of a protective effect of betaine in a
culture performed in the presence of sorbitol, suggest that a similar
mechanism exists in L. lactis NCDO763.
The strong sequence similarities among BusA, OpuA, and ProU indicate
that BusA belongs to the ABC-type superfamily of transporters. Bacterial ATP-driven uptake permeases are typically composed of three
functional modules (24): (i) the ATP-binding-hydrolyzing protein, a homo- or heterodimer whose role is to fuel the transport reaction; (ii) the two integral TMDs, organized as a dimer; and (iii)
the extracytoplasmic substrate-binding protein, which traps the
substrate and delivers it to the transport machinery. The genetic
organization of busA does not correspond to this archetype. The transporter deduced from the sequence of busA is unusual
in two respects: first, there is a fusion between the TMD and SBD, and
second, there is a swapping of the N- and C-terminal subdomains of the
SBD compared to other betaine-binding proteins.
In gram-positive organisms, the substrate-binding proteins of ABC
transporters are synthesized with a precursor signal peptide, which is
cleaved by a specific signal peptidase. After this hydrolysis, the new
N-terminal cysteine is acylated with a fatty acid, a process which is
believed necessary for the membrane anchoring of the protein (19,
43). However, the lipid attachment could not be an absolute
requirement in gram-positive organisms, since a potential
substrate-binding protein of Lactobacillus fermentum was
shown to be anchored to the cell surface through electrostatic interactions (47). At this time, we can speculate on two
possibilities about the biochemical organization of functional BusA.
After its translocation across the membrane, the SBD could be released
outside the cell by an unknown proteolytic event. In that case, the
absence of a lipoprotein consensus sequence in the region preceding the betaine-binding domain makes it unlikely that the N terminus is acylated. The second and more plausible fate of BusAB would be that
both domains remain fused. This hypothesis is reinforced by the
presence of a 55-kDa protein in the membrane fraction of L. lactis cross-reacting with an anti-OpuAC antiserum. These data are
fully consistent with the idea that the functional betaine transporter
of L. lactis involves a bifunctional protein composed of a
TMD and an SBD. Interestingly, the linker region of BusAB connecting
the TMD to the SBD displays sequence similarities to the signal peptide
of OpuAC and its hydropathic properties indicate a
transmembrane-spanning segment. Such an organization would be very
similar to that of an unprocessed OpuAC mutant, for which a normal
betaine uptake activity has been demonstrated in vivo (19). A search in the unfinished bacterial genome
databank indicated that BusAB is not an isolated example of a fusion
between the TMD and SBD coding regions. The putative betaine ABC
transporters of Enterococcus faecalis and
Streptococcus pyogenes, two organisms that are
phylogenetically similar to L. lactis, display
the same features. The polypeptides deduced from these sequences are
similar in size and share more than 60% identity with BusAB (data not shown).
Another interesting characteristic of the polypeptide organization of
BusAB concerns the interchange of the two halves of the SBD compared to
OpuAC. The Km measured for BusA is in the micromolar range and is close to those reported for other betaine transporters, indicating that the betaine-binding capacity is not
affected by the inversion. Although the three-dimensional structure of
a betaine-binding protein has not yet been reported, we can hypothesize
that the global fold conforms to the classical organization and
consists of two hinge-connected lobes, which is the structural
signature for the substrate-binding component of bacterial ABC
transporters (37). On the basis of such a hypothesis, it is
conceivable that the domain swapping observed in the SBD preserves this
spatial arrangement. Furthermore, the sequence inversion is probably
independent from the fusion with the TMD, since the
putative betaine-binding protein of Borrelia
burgdorferi AE001125, which is encoded by a distinct gene,
displays the same permutation. It must also be noted that significant
similarity (30% identical or highly similar residues) was detected
between the two halves of the betaine-binding protein OpuAC of B. subtilis. This property, unusual among substrate-binding proteins,
may indicate that a gene duplication event is at the origin of this set
of proteins.
ABC transporters are encoded by the largest group of
paralogous genes in prokaryotic genomes. Multidomain proteins
arising from gene fusions are well recognized in this
superfamily, but until now the only known cases involved the
ATP-binding domains and the TMDs (24). The new
organization observed for the high-affinity betaine uptake system of
L. lactis might provide an important tool for the
understanding of the control of transport by the substrate-binding
component. Moreover, the association of the transmembrane component
with a hydrophilic domain could help in the crystallization of BusAB,
making BusA an attractive model for further structural study of an ABC transporter.
 |
ACKNOWLEDGMENTS |
This work was supported by the Programme de Recherche
Fondamentale en Microbiologie, Maladies Infectieuses et Parasitaires from the Ministère de l'Education Nationale de la Recherche et de la Technologie (MENRT). D.O. is the recipient of a fellowship from
the MENRT.
We thank S. D. Ehrlich and A. Sorokin for the release of
diagnostic sequence data of L. lactis IL1403. We are
indebted to E. Bremer for the gift of the antiserum raised against
OpuAC. We are grateful to Jamila Anba for her help in RNA isolation and to Emmanuelle Maguin for her advice in the early steps of the mutagenesis experiments.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Unité de
Biochimie et Structure des Protéines, Institut National de la
Recherche Agronomique, 78352 Jouy-en-Josas Cedex, France.
Phone: 33-1-34-65-22-62. Fax: 33-1-34-65-21-63. E-mail:
mistou{at}jouy.inra.fr.
 |
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Journal of Bacteriology, October 1999, p. 6238-6246, Vol. 181, No. 20
0021-9193/99/$04.00+0
Copyright © 1999, American Society for Microbiology. All rights reserved.
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