Department of Life Science and Biotechnology,
Faculty of Life and Environmental Science, Shimane University, 1060 Nishikawatsu, Matsue, Shimane 690-8504, Japan
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INTRODUCTION |
Chitosanase (EC 3.2.1.132) catalyzes
the hydrolysis of glycosidic bonds of chitosan, which is a totally or
partially deacetylated derivative of chitin. Chitin is a
polymer of N-acetylglucosamine. It was proposed that
chitosanases are enzymes that hydrolyze GlcN-GlcN, GlcN-GlcNAc,
and GlcNAc-GlcN bonds but not GlcNAc-GlcNAc bonds (5, 13).
However, the difference between chitosanase and other enzymes, such as
chitinases, lysozymes, and
N-acetyl-
-D-glucosaminidases is sometimes
obscure, especially in the case of enzymes that display activity toward
multiple substrates. It is thought that the ability to hydrolyze a
100% deacetylated chitin is an important criterion for classifying an
enzyme as a chitosanase. Chitosanases are produced by many organisms,
including actinomycetes (2, 17), fungi (4, 27),
plants (6, 18), and bacteria (7, 16, 22, 29, 30).
Bacterial chitosanases have received special attention because they are
important for the maintenance of the ecological balance and have been
used to determine the mechanism of chitosan hydrolysis at both
biochemical and molecular levels. Compared to the numerous reports on
the primary structure and function of chitinases, information on
chitosanases is still relatively limited.
So far, chitosanase genes have been isolated from Bacillus
circulans MH-K1 (1), Nocardioides sp. strain
N106 (12), Streptomyces sp. strain N174
(13), and Fusarium solani (26). Among
these, the former three chitosanases show structural similarity, but the one from F. solani does not. The chitosanase from
Streptomyces sp. is the only example of a chitosanase whose
three-dimensional structure has been determined (11, 23). We
still did not know how many different types of chitosanase exist in
nature. Some chitosanases have hydrolytic activity on substrates other
than chitosan, such as chitin (28) and cellulose
(21). A more detailed knowledge of the structure of a number
of chitosanases will be required for understanding their enzymatic
differences and common structural elements.
We isolated Matsuebacter chitosanotabidus 3001 as a
bacterium that produces chitosanase and classified it as a new genus
and species belonging to the
-subclass of Proteobacteria
(20). In this study, we report the properties of purified
chitosanase from M. chitosanotabidus 3001 and describe the
complete nucleotide sequence of the chitosanase (choA) gene.
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MATERIALS AND METHODS |
Materials.
Various degrees of deacetylated chitosan (70 to
100%) were purchased from Funakoshi Co., Ltd. (Tokyo, Japan). Chitin
was obtained from San-in Kensetsu Co., Ltd. Oligomers of glucosamine
were purchased from Seikagaku Kogyo Co., Ltd. (Tokyo, Japan). Glycol
chitosan was purchased from Wako Pure Chemical Industries, Ltd. (Osaka, Japan). Carboxymethylchitosan and carboxymethylchitin were obtained from Nissui Co., Ltd. (Tokyo, Japan).
ZapII and the packaging kit
were purchased from Stratagene. Ampicillin,
5-bromo-4-chloro-3-indolyl-
-D-galactoside (X-Gal) and
isopropyl-
-D-thiogalactopyranoside (IPTG) were purchased from Takara Biomedicals (Kyoto, Japan). Restriction endonuclease and
bacterial alkaline phosphatase were obtained from Toyobo Co., Ltd.
(Osaka, Japan), or Takara Biomedicals. The cassettes and cassette
primers, 5'-d(GTACATATTGTCGTTAGAACGCGTAATACGACTCA)-3' (C1)
and 5'-d(CGTTAGAACGCGTAATACGACTCACTATAGGGAGA)-3' (C2), were purchased from Takara Biomedicals. All other chemicals were reagent grade or molecular biological grade.
Screening and culture conditions of M. chitosanotabidus.
M. chitosanotabidus 3001 was identified as a novel bacterium
on the basis of its 16S rRNA sequence, morphology, and physiological properties as described previously (20).
For growth in liquid culture, M. chitosanotabidus 3001 was
grown in modified base medium containing 0.4% (wt/vol) colloidal chitosan. For chitosanase production, a single colony of M. chitosanotabidus 3001 was inoculated in 50 ml of colloidal
chitosan liquid medium and grown for 4 days at 30°C with shaking (200 rpm). This medium consisted of 0.4% (wt/vol) colloidal chitosan, 0.5%
MgSO4, 0.3% KH2PO4, 0.7%
K2HPO4, 0.25% yeast extracts, and 0.25%
polypeptone at pH 7.0.
Concentration and purification of chitosanase.
Bacterial
cells were removed from culture broth by centrifugation at 12,000 rpm
for 15 min in a Kubota KR-20000T rotor, and proteins in supernatant
fluids were concentrated with ammonium sulfate (70% saturation). After
incubation at 4°C for 1 h, the precipitates were collected by
centrifugation at 12,000 rpm for 20 min. The precipitates were
dissolved in an appropriate volume of 50 mM Tris-HCl buffer at pH 8.0 and dialyzed against 20 mM Tris-HCl buffer (pH 8.0) at 4°C overnight.
The dialysates were centrifuged to remove the insoluble materials and
were used as crude chitosanolytic enzyme fraction. Crude chitosanolytic
enzyme was purified by isoelectric chromatography on a 110-ml column (LKB-Produkter) with ampholine (Sigma) as the carrier ampholite. Each
fraction was collected, and the chitosanase activity was measured.
Active fractions (numbers 31 and 32) were collected and used as a
source of purified enzyme (Fig. 1).
Proteins eluting from the column were detected by measuring the
absorbance at 280 nm.

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FIG. 1.
Isoelectric-focusing chromatography of chitosanase
produced by M. chitosanotabidus 3001. Open circles
( ) indicate the absorbance at 280 nm, and solid circles ( )
indicate the activity of the enzyme. Fractions 31 and 32 were pooled
and used as a source of purified enzyme.
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Determination of amino acid sequence and immunoblotting.
To
determine internal amino acid sequences, purified chitosanase from
M. chitosanotabidus 3001 was digested with an appropriate concentration of trypsin, and the resulting peptides were separated by
sodium dodecyl sulfate (SDS)-12.5% polyacrylamide gel electrophoresis (PAGE). Chitosanase purified as mature extracellular protein from E. coli expressing the chitosanase gene (choA)
was also used for determining of the N-terminal amino acid sequence.
The enzyme partially digested with trypsin was blotted to
polyvinylidene difluoride (PVDF) membrane (Immobilon-PSQ; pore size,
0.45-µm; IPVH 304FO; Millipore) by using the electroblotting system
according to the manufacturer's instructions (Nippon Millipore Co.).
Amino acid sequencing was performed by using a Shimadzu protein
sequencer (PSQ-10). Rabbit antiserum raised against the chitosanase
(anti-Cho) was prepared by Takara Biomedicals (Kyoto, Japan).
In Western blot analysis, cell extracts were subjected to SDS-PAGE
(12.5%), and the protein bands were electrophoretically transferred
onto a nitrocellulose membrane. For immunolabeling of ChoA,
nitrocellulose membranes were incubated at room temperature with
shaking in TBS-M buffer (20 mM Tris-HCl [pH 7.6], 0.137 M NaCl,
0.25% Tween 20, 5% dried milk) for at least 1 h. Afterwards, the
membranes were rinsed several times with Tris-buffered saline (TBS-T,)
buffer and then incubated for 1 h with rabbit antiserum. After
several rinses in TBS buffer, the membranes were incubated with the
horseradish peroxidase-conjugated second antibody, and the
membrane-bound immunocomplexes were detected on X-ray film by the
enhanced chemiluminescence method, which is based on measuring light
emission from the oxidation of acridinium esters (ECL-Plus System; Amersham).
Construction and expression of ChoA-GFP fusions.
The DNA
fragment corresponding to the N-terminal region of ChoA was amplified
by PCR by using the primer TAGGATCCTATGCAACTTCCTCGACCTGAT (to create a BamHI site in front of the ATG codon) as
the sense primer and TTGAATTCTTGGGGCCGGCCATGCC (to create an
EcoRI site at the codon for the 48-amino-acid segment of
ChoA) or TTGAATTCGGAATCACGCCCGCCGC (to create an
EcoRI at the codon for the 88-amino-acid segment of ChoA) as
the antisense primer. PCR was used to amplify the GFP (green
fluorescent protein) gene from pGP110 by using the primer
ACGAATTCTAGTAAAGGAGAAGAA (to create an EcoRI site
before the ATG codon) and the primer
ATCCCGGGAAGCTTATTTGTATAGTTCATC (to create a
HindIII site at the 3' end) (15). The two DNA
fragments coding for ChoA and GFP were ligated into pBluescript SK(+)
to yield pB48ChG (the N-terminal 48-amino-acid region was fused to GFP)
and pB88ChG (the N-terminal 88-amino-acid region was fused to GFP).
E. coli JM109 harboring pB48ChG or pB88ChG was grown on
Luria-Bertani medium to an optical density at 600 nm of 0.2 to 0.5. The
cells were then further incubated for 2.5 h with 1 mM IPTG. Cells
and supernatant were separated by centrifugation. Protein in the
supernatant was concentrated by ultrafiltration through a Centricon 10 (Amicon) apparatus. E. coli cells were disrupted by
sonication, and undisrupted cells were removed by centrifugation. Proteins (5 µg) were loaded onto each lane and electrophoresed. Western blot analysis was done by using an anti-GFP antibody
(Clontech). Western blot analysis was carried out as described above.
Chitosanase assay.
Chitosanase activity was assayed by using
colloidal chitosan as a substrate. The reaction mixture consisted of
0.5 ml of 0.5% colloidal chitosan, 1 ml of McIlvaine buffer (0.1 M
citrate plus 0.2 M Na2HPO4) at pH 7.0, and 0.5 ml of the enzyme solution, and the mixtures were incubated at 30°C
for 10 min. Reactions were stopped by boiling for 3 min, the reaction
mixtures were centrifuged, and the supernatants were retained. The
amount of reducing sugars produced was determined at
A420 by the modified Schales method (8). One unit of chitosanase activity was taken as the
amount of enzyme that produced 1 µmol of reducing sugars (expressed
as glucosamine equivalents) per min.
DNA manipulations and amplification (PCR) reactions.
Oligonucleotide probes were synthesized by Takara Biomedicals. Standard
procedures for restriction endonuclease digestion, agarose gel
electrophoresis, purification of DNA from agarose gels, DNA ligations,
and other cloning-related techniques were done as described by Sambrook
et al. (24).
PCR amplification of the chitosanase gene was performed by using a DNA
Thermal Cycler (Perkin-Elmer/Cetus). The two primers, designated S1 and
S2 (5'-TCCGACAAGAAC(T)AAG(A)CG(T)CGCG-3' and 5'-GTACTT(C)GTCCTGCTG(T)CGTGT-3'), were used to amplify a
piece of the choA gene from M. chitosanotabidus
3001. The mixtures contained 0.1 nM concentrations of each primer, 2.5 mM concentrations of each deoxynucleoside triphosphate, 100 ng of
template DNA, 0.2 U of Ex-Taq DNA polymerase (Takara
Biomedicals), and a 10× concentration of reaction buffer.
Amplification was allowed to proceed through 30 cycles, where each
cycle consisted of denaturation (94°C, 1 min), primer annealing
(45°C, 2 min), and polymerization (72°C, 3 min). For amplification
of a piece of the choA gene, the cassettes and cassette
primer method (9, 14) were used to amplify a neighboring DNA
of the known DNA region. Chromosomal DNA of M. chitosanotabidus was digested with BamHI and ligated
with double-stranded DNA cassettes possessing BamHI sites.
Then, cassette-ligated DNA was amplified by PCR by using the known
sequence primers (S2, R1) and cassette primers (C1, C2).
Construction of genomic libraries and hybridization
conditions.
In order to construct a genome library, the total
chromosomal DNA from M. chitosanotabidus 3001 was isolated
by the method described by Sambrook et al. (24). Genomic DNA
was completely digested with SacI, and the fractions
containing 2- to 6-kbp DNA fragments were obtained by density gradient
centrifugation. The fragments were cloned into the SacI site
of SacI-digested
ZapII. The PCR-amplified 0.3-kbp DNA
fragment containing a portion of the chitosanase gene of M. chitosanotabidus 3001 was used to probe the genomic library by
plaque hybridization. Southern transfer of DNA onto a nylon membrane
was performed according to the method of ECL Systems (Amersham, United Kingdom).
Competent E. coli XL1-Blue MRF' cells were transfected with
the packaged phage. Approximately 1,800 plaques were obtained, and
these were screened by plaque hybridization with the PCR-amplified 0.3-kbp DNA fragment as a probe. A positive clone that contained the
choA gene was recovered as a plasmid by in vivo excision.
DNA sequencing and analysis.
Nested deletions of pChoU1 were
generated by using the Kilo-Sequence Deletion Kit (Takara). DNA
sequencing was performed on both double-stranded templates obtained
after the subcloning of appropriate segments in the pBluescript II
SK(
) and KS(
) vectors by using the dideoxy DNA sequencing system of
the Ampli CycleR Sequence kit (Perkin-Elmer/Cetus) according to the
procedure supplied by the manufacturer. DNA fragments were analyzed on
an ABI Prism 377 DNA automated sequencer according to the instructions
of the manufacturer. Nucleotide and amino acid sequence comparisons
were made with the help of the GenBank database. The DNA sequence of the choA gene was deposited in the DDBI/EMBL/GenBank data
base with the accession AB010493.
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RESULTS |
Purification of the chitosanase.
M. chitosanotabidus
3001, isolated from soil collected in Matsue, Japan, was selected for
its ability to form clear zones on plates of agar medium containing 1%
colloidal chitosan (20). Apparently, this bacterium was an
active chitosanase producer and was chosen for further studies of this
enzyme. Chitosanase was purified from the supernatant fluids of broth
cultures of M. chitosanotabidus 3001 as described in
Materials and Methods. The steps used to purify the chitosanase
are summarized in Table 1. The specific
activity of the final preparation was 250 U/mg. The homogeneity of the
purified enzyme was verified by SDS-PAGE (Fig.
2A, lane 2). The molecular weight of the
purified chitosanase was estimated to be 34,000. The isoelectric point
(pI) of the enzyme was determined to be 9.6 by isoelectric focusing.

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FIG. 2.
SDS-PAGE (A) and immunoblotting (B) of the purified
enzyme from M. chitosanotabidus. (A) The homogeneity of the
purified enzyme was examined by using SDS-PAGE and staining with
Coomassie brilliant blue R-250 (horizontal arrow). (B) Results of
immunoblots of the purified enzyme and trypsin-digested proteolytic
products. The positions of molecular size standards are indicated to
the left of panel A. A 19-kDa protein is the digested product which was
used to determine the amino acid sequence. Lanes 1, crude proteins (1.0 mg) from culture supernatant; 2, purified chitosanase (30 ng); 3, immunoblot of the purified chitosanase (50 ng) from M. chitosanotabidus 3001; 4, immunoblot of the digested products of
the purified chitosanase.
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To determine the pH dependence of chitosanase activity, McIlvaine
buffer (pH 2.0 to 8.0), Tris-HCl buffer (pH 9.0 to 10.0), and 0.05 M
Na2HPO4 plus 0.1 M NaOH buffer (pH 10.0 to
12.0) were used to create a range of pH values in the reaction
mixtures. The purified chitosanase showed optimal activity at pH 4.0. The stability of the chitosanase was determined in the same
buffers used in the experiments described above. After 30 min of
incubation at 37°C, the residual chitosanase activity was determined
after readjustment of the pH to 4.0 with 0.5 M sodium acetate buffer. Chitosanase activity was found to be stable over a wide range of pH
values, ranging from 4.0 to 9.0 (data not shown).
The optimum temperature of the purified enzyme under standard assay
conditions was 30 to 40°C in the presence of chitosan. To determine
the temperature stability of the purified enzyme, the residual activity
was measured after incubation of the enzyme at various temperatures for
1 h at pH 4.0 in the absence of substrate. Ca. 92, 95, and 95% of
the initial chitosanase activity remained after incubation at 20, 30, and 40°C for 1 h, respectively. At least 35% of the initial
chitosanase activity remained when reaction mixtures were kept at under
50°C (data not shown).
Effects of metal ions on chitosanase activity.
The effect of
several metal ions on the activity of purified chitosanase was tested.
Chitosanolytic activity was assayed after metal ions, including
Ag+, Ba2+, Co2+, Hg2+,
Ca2+, Cu2+, Mg2+, Fe2+,
Mn2+, and Zn2+, were each added to the reaction
mixtures at final concentrations of 1 mM. The enzymatic activity was
assayed after preincubation at 30°C for 30 min. Chitosanolytic
activity was not affected by Ba2+, Co2+,
Hg2+, Ca2+, Cu2+, Mg2+,
Fe2+, Mn2+, or Zn2+, but it was
almost completely inhibited by Ag+ (data not shown).
Specific activities of the purified enzyme with different
substrates.
Various derivatives of chitin and chitosan were used
to determine the specificity of chitosanolytic activity (Table
2). Glycol chitosan and
carboxymethylchitosan showed 113 and 6% susceptibilities to the
enzyme, respectively. Chitin derivatives and cellulose were not
degraded by the purified enzyme. The chitosanolytic enzyme, therefore,
showed high specificity for chitosan and its derivatives. We also
examined the ability of the enzyme to degrade chitosan that had
been subjected to various degrees of deacetylation. Compared to the
90% deacetylated chitosan, 100% deacetylated preparations were poor substrates, as were preparations containing less than 70% deacetylation (Table 2).
Reaction pattern of the chitosanase with chitosan or its
oligosaccharides.
The products of hydrolysis of chitosan and GlcN
oligosaccharides by the purified enzyme were analyzed by thin-layer
chromatography. Table 3 shows the
products of hydrolysis by chitosanase. When 80% deacetylated chitosan
was employed, the amounts of tetramer, pentamer, and hexamer of
glucosamine increased during the first 24 h of incubation, but
their concentrations decreased after 30 h in parallel with the
increase in the concentration of the dimer and trimer. The dimer and
trimer of glucosamine were the final products of chitosan degradation.
The monomer was never detected with the purified enzyme. The purified
chitosanase could not hydrolyze the dimer and the trimer of
glucosamine, but the enzyme could cleave the tetramer, pentamer,
and hexamer into a dimer and a trimer. These results show that the
tetramer is the minimum molecular size necessary for digestion by
chitosanase. These results also suggest that chitosanase from M. chitosanotabidus 3001 is an endosplitting-type chitosanase.
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TABLE 3.
Production of chitosan oligomers in the degradation of
chitosan and glucosamine oligomers with chitosanase
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Immunoblotting and determination of amino acid sequence.
We
next determined the internal amino acid sequence of the purified
enzyme. To determine the internal amino acid sequence, purified
chitosanase was digested with the appropriate concentration of trypsin
and then separated by SDS-12.5% PAGE. Purified enzyme and partially
degraded chitosanase were blotted onto PVDF membrane and then detected
by Western blotting by using an antibody raised against chitosanase
(Fig. 2B). The amino acid sequence of the amino terminus of a 19-kDa
peptide (Fig. 2B, lane 4), which was obtained after treatment with
trypsin, was determined to be SDKNKRAALTKIXGALQSAFDTQQDKY.
Cloning of the chitosanase gene from M. chitosanotabidus 3001.
Based on the 27-amino-acid sequence
described above, a mixture of two oligonucleotide primers,
5'-TCCGACAAGAAC(T)AAG(A)CG(T)CGCG-3' (S1) and
5'-GTACTT(C)GTCCTGCTG(T)CGTGT-3' (S2), was
prepared, and a 80-bp DNA fragment was obtained by PCR amplification
and then cloned into the vector pBluescript II SK(
). The sequence of
this DNA fragment matched the amino-terminal amino acid sequence of the
19-kDa peptide. Then, the cassette-cassette PCR reaction (see Materials
and Methods) was done by using M. chitosanotabidus 3001 genomic DNA to extend the region of the cloned fragment. Two
oligonucleotide primers, S2 and R1 (5'-AGATCTTGGTCAGCGCCG-3'), were used to amplify DNA fragments corresponding to the coding region of the choA gene sequence. The cassette-cassette
primers (C1 and C2) and the S2 and R1 primers were used to amplify
the flanking fragment. A single major band of 300-bp was
amplified by PCR by using the two primers, C2 and R1. Then, this 300-bp was used as a hybridization probe for genomic library screening.
Southern hybridization was performed with total M. chitosanotabidus 3001 DNA digested with several restriction
enzymes by using the PCR products as probes. This resulted in the
appearance of 1.6-, 2.5-, 4.0-, and 10-kb bands after SalI,
SacI, PstI, and EcoRI digestion,
respectively (data not shown). We chose the SacI enzyme to
construct the genomic library. The ~2.5-kbp SacI DNA fragment was isolated from an agarose gel by electroelution and cloned
into
ZapII.
The library was screened by plaque hybridization with the 300-bp
PCR-amplified fragment as a probe. A few positive plaques carried the
2.5-kb fragment in alternative orientations. The DNA in a positive
plaque of
ZapII was changed into a plasmid by the in vivo excision
method, and the plasmid obtained was designated pChoU1. (For a
restriction map of the cloned fragment in pChoU1, see Fig. 3). When
E. coli cells harboring pChoU1 were plated on a medium
containing colloidal chitosan as a sole carbon source for chitosanase
production, a clear degradation zone was observed, confirming that
pChoU1 carries the chitosanase gene.
Deletion analysis and restriction mapping.
To determine the
coding region of the chitosanase gene, we performed deletion analysis.
Clones containing various deletion derivatives from both directions
were obtained (Fig. 3). The number associated with the name of the plasmid indicates the deletion site on
the nucleotide sequence shown in Fig. 4.
These deletion derivatives were transformed into E. coli
DH10B and were tested for their ability to form clear zones on the
colloidal chitosan plate (Fig. 5).

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FIG. 3.
Various plasmid constructions derived from the
choA gene. pChoU1 is the chitosanase-positive clone that
contained a 2.5-kbp SacI fragment. The names of the clones
carrying the various deletion derivatives from pChoU1 are shown on the
right. The direction and coding regions of the choA gene are
indicated by the large arrow. Small arrows indicate the directions of
the lacZ promoter. To determine the chitosanase activity,
E. coli cells carrying pChoU1 or its deletion derivatives
were transferred to the colloidal chitosan plates containing 0.4%
colloidal chitosan and 50 mg of ampicillin per ml. Chitosanase
activities were detected by the ability to form clear halos around the
colonies on colloidal chitosan plates: +, visible halo; , no halo.
pB88ChG and pB48ChG carry the fusion genes that encode the N-terminal
88-amino-acid region and the 48-amino-acid region of ChoA fused to the
GFP protein, respectively. pBG carries only the GFP gene on the
pBluescript SK(+). Restriction sites are designated as follows: Sa,
SacI; SI, SalI; B, BamHI.
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FIG. 4.
Nucleotide sequence and deduced amino acid sequence of
the choA gene from M. chitosanotabidus 3001. The
putative Shine-Dalgarno sequence is indicated by a double underline.
The one-letter amino acid code is aligned below the nucleotide
sequence. The signal peptide sequence is underlined with a dashed line,
and a signal sequence cleavage site is represented by a vertical arrow
between the alanine residues at positions 80 and 81. Boxed amino acids
were determined by N-terminal amino acid sequencing of the purified
chitosanase from E. coli expressing the choA
gene. A wavy line indicates the amino acid sequence obtained from the
purified chitosanase. Two arrows indicate the nucleotide sequence of
the primers that were used for PCR. The single bold arrow indicates the
primer used to amplify the PCR fragment by using the cassette-cassette
primer PCR amplification method.
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FIG. 5.
Detection of chitosanase activity on the chitosanase
medium plate. M. chitosanotabidus 3001 (A) and E. coli carrying the plasmid pChoU1 and its deletion derivatives (B)
were spotted onto the colloidal chitosan plate to assay for chitosanase
expression. The plates were incubated at 30 and 37°C for 3 days,
respectively. Chitosanase activity was identified as a clear zone
around the colony on the colloidal chitosan plate. E. coli
carrying the plasmid pChoU1 and its deletion derivatives are indicated
as follows: 1, pChoU1; 2, pChoU268; 3, pChou396; 4, pChoU541; 5, pBluescript II SK( ); 6, pChoR2552; 7, pChoR1821; and 8, pChoR1482.
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Deletion derivatives containing a 396-bp deletion from upstream to
downstream (pChoU396) and a 733-bp deletion from downstream to upstream
(pChoR1821) were not defective in their ability to form clear zones.
However, deletion derivatives containing a 541-bp deletion (pChoU541)
from upstream to downstream and a 1,072-bp deletion from downstream to
upstream (pChoR1482) did not show any chitosanase activity on the
colloidal chitosan plate (Fig. 5). Therefore, these results indicate
that the chitosanase gene is located in the 1,425-bp region between
positions 396 and 1,821.
Sequence analysis of the chitosanase gene (choA).
The nucleotide sequence of the cloned SacI fragment (2,557 bp) was determined for both strands (Fig. 4). The presumed coding sequence started with initiation codon ATG at position 529, which was
preceded by a putative ribosome-binding site, GGAGAGA, and extended to the stop codon, TGA, located at position 1,702. The open
reading frame of 1,173 bp would code for a 391-amino-acid polypeptide.
The deduced N-terminal 80 amino acids showed the typical features of
signal peptides, such as the presence of hydrophobic amino acids. A
comparison of the signal sequence region of three chitosanases from
M. chitosanotabidus, Nocardioides sp. strain N106, and Streptomyces sp. strain N174 is shown in Fig.
6. Although the signal sequence regions
are similar among these chitosanases, other regions did not show any
significant homologies.

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FIG. 6.
Comparison of the N-terminal amino acid sequences of
three chitosanases. N-terminal amino acid sequences of the chitosanases
from M. chitosanotabidus 3001 (ChitoM),
Nocardioides sp. strain N106 (12) (ChitoN), and
Streptomyces sp. strain N174 (13) (ChitoS) are
shown. Identical amino acids are boxed.
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N-terminal cleavage site of ChoA.
We found that the signal
peptide was cleaved between alanine residues 80 and 81 by determining
the amino-terminal sequence of purified mature chitosanase from
M. chitosanotabidus. Cleavage at amino acid position 80 would result in a protein of 311 amino acids with a calculated
molecular weight of 34,000. This is consistent with the size of the
34-kDa chitosanase estimated by SDS-PAGE. The 15 N-terminal amino acids
of the 34-kDa protein produced by E. coli carrying the
cloned choA gene was determined to be AAAAGVIPVGDSRVY. This
sequence is identical to the one predicted from the choA DNA
sequence and lies between Ala-81 and Tyr-95. The 80-amino-acid sequence is considered to be the signal sequence responsible for the
export of ChoA into the medium both in M. chitosanotabidus and E. coli. We determined the enzymatic activity in a
culture of E. coli expressing choA. Whereas
the extracellular chitosanase activity was 3.4 U/mg, the
cell-associated chitosanase activity was only 0.13 U/mg, indicating
that most of the enzyme had been released.
To verify that the N-terminal signal sequence of ChoA is
functional in E. coli, the N-terminal sequence of ChoA
was fused to GFP. GFP fusions bearing the 48-amino-acid (pB48ChG)
or the 88-amino-acid (pB88ChG) region of ChoA were
constructed and inserted into the expression plasmid (Fig.
3). E. coli cells harboring these plasmids were grown, and
extracellular and intracellular proteins were detected by Western blot
analysis with the GFP antibody. While both of these proteins were
detected intracellularly (Fig. 7, lanes 2, 4, and 6), the extracellular
protein contained the GFP fusion protein with the 88-amino-acid region
(lane 5) but not the GFP fusion protein with the 44-amino-acid region
or GFP alone (lanes 1 and 3). The cleaved ChoA protein was only seen when the 88-amino-acid-GFP fusion was employed, and a fraction of the
extracellular proteins still possessed the signal sequence (lane 5).
These results suggest that the N-terminal signal sequence was
functional in E. coli and that this region needs to be
longer than 48 amino acids to be functional.
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DISCUSSION |
Table 4 summarizes all of the
microbial chitosanases that have been identified to date. The data are
still relatively limited compared to similar data for the many
chitinase genes that have been analyzed thus far (19). The
molecular weights of chitosanase are relatively low (26,000 to 50,000)
compared to those of chitinases (31,000 to 115,000) (19). In
the present study the 34-kDa chitosanase produced by M. chitosanotabidus 3001 was purified and characterized, and
its corresponding gene was cloned. Although the enzymatic properties of M. chitosanotabidus 3001 chitosanase
are similar to those of other chitosanases, the optimal temperature and
pH of our chitosanase were the lowest among known chitosanases (Table 4). The chitosanase from M. chitosanotabidus 3001 is highly
active on glycol chitosan, but it does not hydrolyze
carboxymethylchitosan, colloidal chitin, or carboxymethylchitin. Most
known chitosanases do not hydrolyze 100% chitin or cellulose. However,
a chitosanase from Myxobacter AL-1 (7, 21) has
the unique feature of being able to hydrolyze carboxymethyl cellulose,
and a chitosanase from Acinetobacter sp. strain CHB101
hydrolyzes glycol chitin (28). Recently, a part of the
chitosanase sequence from Myxobacter AL-1 was reported to
have structural similarity to an endoglucanase from Bacillus
subtilis (21). Even though there are widespread similarities in the activities of chitosanases, there seem to be
many different structural types of chitosanases in nature.
Purified chitosanase from M. chitosanotabidus 3001 had
highest activities with 90% deacetylated chitosan and efficiently
hydrolyzed 70 to 100% deacetylated chitosan. The fact that 90%
deacetylated chitosan is more susceptible to hydrolysis than
100% deacetylated chitosan may suggest that
N-acetylglucosamine residues in the chitosan are
important in the recognition mechanism of the substrate by the enzyme.
The ability to degrade 100% deacetylated chitosan is an important
characteristic used to categorize enzymes as chitosanases. However, enzymes in nature have different specificities
depending on the different degrees of deacetylation of chitosan, as
indicated in Table 4.
The chitosanase activity of M. chitosanotabidus 3001 was not
inhibited by Ba2+, Co2+, Hg2+,
Ca2+, Cu2+, Mg2+, Fe2+,
Mn2+, and Zn2+, but it was completely inhibited
by 1 mM Ag+. Chitosanase from Myxobacter AL-1 is
an example of another enzyme inhibited by Ag+ (7,
21). However, this chitosanase differs from that of M. chitosanotabidus 3001 in several ways (Table 4).
The choA gene encoding a 34-kDa chitosanase was cloned into
E. coli, and the complete nucleotide sequence of the gene
was determined. This is the fifth chitosanase whose primary structure has been determined (Table 4). The deduced amino acid sequence of the
choA gene is identical to the amino acid sequence of the purified chitosanase (Fig. 4). The choA gene encodes a
polypeptide of 391 amino acid residues which includes an 80-residue
signal sequence. This 80-residue signal sequence is functional in
E. coli (Fig. 7). Fusion of
the signal sequence of ChoA with GFP suggested that the signal for
excretion required more than 48 amino acids but fewer than 88 amino
acids (Fig. 7). Surprisingly, however, the GFP fusion protein with the
88-amino-acid region, as well as the cleaved protein, was found in both
the intracellular and extracellular fractions. We speculate that the
signal peptidase of E. coli recognizes the cleavage site of
the fusion protein but that the fusion protein may not necessarily have
to be cleaved for excretion.

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FIG. 7.
Western blot analysis of the chitosanase-GFP fusion
proteins. Extracellular proteins (lanes 1, 3, and 5) and intracellular
proteins (lanes 2, 4, and 6) from E. coli JM109 harboring
pBG (lanes 1 and 2), pB48ChG (lanes 3 and 4), or pB88ChG (lanes 5 and
6) were loaded onto the gel. Western blot analysis was done by using an
anti-GFP antibody. The extracellular ChoA-GFP protein was only seen in
lane 5.
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Computer analyses of the deduced amino acid sequence did not reveal a
strong identity with any other protein sequences of glycolytic enzymes,
including the chitosanases, chitinases, and N-acetylglucosaminidases included in protein databases.
Three bacterial chitosanases from B. circulans MH-K1,
Streptomyces sp. strain N174, and Nocardioides
sp. have a common primary structure (3). However, ChoA from
M. chitosanotabidus, as well as a fungal chitosanase, is
different. Thus far, at least three different types of chitosanases
have been identified on the basis of their primary structure.
There is an 80-amino-acid signal polypeptide at the N terminus of ChoA
of M. chitosanotabidus 3001 (Fig. 6). The N-terminal 15-amino-acid sequence determined from the 34-kDa mature chitosanase produced in E. coli was identical to the N-terminal amino
acid sequence of chitosanase from M. chitosanotabidus 3001, indicating that the mature chitosanase is cleaved at the same site in
E. coli. This property will be useful for the mass
production of chitosanase in E. coli.
Boucher et al. (3) suggested that two invariant carboxylic
amino acid residues of Glu22 and Asp40 conserved in N-terminal segments
of chitosanase from Streptomyces sp. strain N174 are essential for its catalytic activity. We have looked for the
corresponding amino acid combination in ChoA of M. chitosanotabidus 3001. There are two candidate residues: residues
Glu121 and Asp139 or residues Glu137 and Asp152. However, since the
regions surrounding these amino acids are not conserved in other
chitosanases, it is difficult to predict whether they may constitute
the catalytic center or not. Further analysis will be required to
define the active region of M. chitosanotabidus
3001 chitosanase.
This work was supported by a grant-in-aid from the Ministry of
Education, Science, and Culture of Japan and by San-in Kensetsu Kogyo
Co., Ltd. J. K. Park was supported by the commemorative foundation
of Yoneyama International Rotary and Iwatanai Naozi.
S. Imamura and F. Ishii participated in some of this work.
| 1.
|
Ando, A.,
K. Noguchi,
M. Yanagi,
H. Shinoyama,
Y. Kagawa,
H. Hirata,
M. Yabuki, and T. Fujii.
1992.
Primary structure of chitosanase produced by Bacillus circulans MH-K1.
J. Gen. Appl. Microbiol.
38:135-144.
|
| 2.
|
Boucher, I.,
A. Dupuy,
P. Vidal,
W. A. Neugebauer, and R. Brzezinski.
1992.
Purification and characterization of a chitosanase from Streptomyces N174.
Appl. Microbiol. Biotechnol.
38:188-193.
|
| 3.
|
Boucher, I.,
T. Fukamizo,
Y. Honda,
G. E. Willick,
W. A. Neugebauer, and R. Brzezinski.
1995.
Site-direct mutagenesis of evolutionary conserved carboxylic amino acids in the chitosanase from Streptomyces sp. N174 reveals two residues essential for catalysis.
J. Biol. Chem.
270:31077-31082[Abstract/Free Full Text].
|
| 4.
|
Fenton, D. M., and D. E. Eveleigh.
1981.
Purification and mode of action of a chitosanase from Penicillium islandicum.
J. Gene. Microbiol.
126:151-165.
|
| 5.
|
Fukamizo, T.,
T. Ohkawa,
Y. Ikeda, and S. Goto.
1994.
Specificity of chitosanase from Bacillus pumilus.
Biochim. Biophys. Acta
1205:183-188[Medline].
|
| 6.
|
Grenier, J.,
N. Benhamou, and A. Asselin.
1991.
Colloidal gold-complexed chitosanase: a new probe for ultrastructural localization of chitosan in fungi.
J. Gen. Microbiol.
137:2007-2015.
|
| 7.
|
Hedges, A., and R. S. Wolfe.
1974.
Extracellular enzyme from Myxobacter AL-1 that exhibits both -1,4-glucanase and chitosanase activities.
J. Bacteriol.
120:844-853[Abstract/Free Full Text].
|
| 8.
|
Imoto, T., and K. Yagishita.
1971.
A simple activity measurement of lysozyme.
Agric. Biol. Chem.
35:1154-1156.
|
| 9.
|
Isegawa, Y.,
J. Sheng,
Y. Sokawa,
K. Yamanishi,
O. Nakagomi, and S. Ueda.
1992.
Selective amplification of cDNA sequence from total RNA by cassette-ligation mediated polymerase chain reaction (PCR): application to sequencing 6.5-kb genome segment of hantavirus strain B-1.
Mol. Cell. Probes
6:467-475[Medline].
|
| 10.
|
Laemmli, U. K.
1970.
Cleavage of structural proteins during the assembly of the head of bacteriophage T4.
Nature (London)
227:680-685[Medline].
|
| 11.
|
Marcotte, E. M.,
A. F. Monzingo,
S. R. Ernst,
R. Brzezinski, and J. D. Robertus.
1996.
X-ray structure of an anti-fungal chitosanase from Streptomyces N174.
Nat. Struct. Biol.
3:155-162[Medline].
|
| 12.
|
Masson, J. Y.,
I. Boucher,
W. A. Neugebauer,
D. Ramotar, and R. Brzezinski.
1995.
A new chitosanase gene from a Nocardioides sp. is a third member of glycosyl hydrolase family 46.
Microbiol.
141:2629-2635[Abstract].
|
| 13.
|
Masson, J. Y.,
F. Denis, and R. Brzezinski.
1994.
Primary sequence of the chitosanase from Streptomyces sp. strain N174 and comparison with other endoglycosidases.
Gene
140:103-107[Medline].
|
| 14.
|
Matsuo, Y.,
M. Kurita,
J. K. Park,
K. Tanaka,
T. Nakagawa,
M. Kawamukai, and H. Matsuda.
1999.
Purification, characterization and gene analysis of N-acetylglucosaminidase from Enterobacter sp. G-1.
Biosci. Biotechnol. Biochem.
63:1261-1268[Medline].
|
| 15.
|
Nabeshima, K.,
S. Saitoh, and M. Yanagida.
1997.
Use of green fluorescent protein for intracellular protein localization in living fission yeast cells.
Methods Enzymol.
283:459-471[Medline].
|
| 16.
|
Okajima, S.,
A. Ando,
H. Shinoyama, and T. Fujii.
1994.
Purification and characterization of an extracellular chitosanase produced by Amycolatopsis sp. CsO-2.
J. Ferment. Bioeng.
77:617-620.
|
| 17.
|
Okajima, S.,
T. Kinouchi,
Y. Mikami, and A. Ando.
1995.
Purification and some properties of a chitosanase of Nocardioides sp.
J. Gen. Appl. Microbiol.
41:351-357.
|
| 18.
|
Osswald, W. F.,
J. P. Shapiro,
H. Doostdar,
R. E. McDonald,
R. P. Niedz,
C. J. Narin,
C. J. Hearn, and R. T. Mayer.
1994.
Identification and characterization of acidic hydrolases with chitinase and chitosanase activities from sweet orange callus tissue.
Plant Cell Physiol.
35:811-820[Abstract/Free Full Text].
|
| 19.
|
Park, J. K.,
K. Morita,
I. Fukumoto,
Y. Yamasaki,
T. Nakagawa,
M. Kawamukai, and H. Matsuda.
1997.
Purification and characterization of the chitinase (ChiA) from Enterobacter sp. G-1.
Biosci. Biotechnol. Biochem.
61:684-689.
|
| 20.
| Park, J. K., Y. Matsuo, K. Shimono, K. Tanaka, T. Nakagawa, A. Yokota, H. Matsuda, and M. Kawamukai. Matsuebacter
chitosanotabidus gen. nov., sp. nov., an aerobic chitosanase
producing gram-negative bacterium belonging to the beta subclass of
Proteobacteria. Submitted for publication.
|
| 21.
|
Pedraza-Reyes, M., and F. Gutierrez-Corona.
1997.
The bifunctional enzyme chitosanase-cellulase produced by the gram-negative microorganism Myxobacter sp. AL-1 is highly similar to Bacillus subtilis endoglucanases.
Arch. Microbiol.
168:321-327[Medline].
|
| 22.
|
Pelletier, A., and J. Sygusch.
1990.
Purification and characterization of three chitosanase activities from Bacillus megaterium P1.
Appl. Environ. Microbiol.
56:844-848[Abstract/Free Full Text].
|
| 23.
|
Robertus, J. D.,
A. F. Monzingo,
E. M. Marcotte, and P. J. Hart.
1998.
Structural analysis shows five glycohydrolase families diverged from a common ancestor.
J. Exp. Zool.
282:127-132[Medline].
|
| 24.
|
Sambrook, J.,
E. F. Fritsch, and T. Maniatis.
1989.
Molecular cloning: a laboratory manual, 2nd ed.
Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y
|
| 25.
|
Sanger, F.,
S. Nicklen, and A. R. Coulson.
1977.
DNA sequencing with chain-terminating inhibitors.
Proc. Natl. Acad. Sci. USA
74:5463-5467[Abstract/Free Full Text].
|
| 26.
|
Shimosaka, M.,
M. Kumehara,
X. Y. Zhang,
M. Nogawa, and M. Okazaki.
1996.
Cloning and characterization of a chitosanase gene from the plant pathogenic fungus Fusarium solani.
J. Ferment. Bioeng.
82:426-431.
|
| 27.
|
Shimosaka, M.,
M. Nogawa,
Y. Ohno, and M. Okazaki.
1993.
Chitosanase from the plant pathogenic fungus, Fusarium solani f. sp. phaseoli: purification and some properties.
Biosci. Biotechnol. Biochem.
57:231-235.
|
| 28.
|
Shimosaka, M.,
M. Nogawa,
X. Y. Wang,
M. Kumehara, and M. Okazaki.
1995.
Production of two chitosanases from a chitosan-assimilating bacterium, Acinetobacter sp. strain CHB101.
Appl. Environ. Microbiol.
61:438-442[Abstract].
|
| 29.
|
Yabuki, M.,
A. Uchiyama,
K. Suzuki,
A. Ando, and T. Fujii.
1988.
Purification and properties of chitosanase from Bacillus circulans MH-K1.
J. Gen. Appl. Microbiol.
34:255-270.
|
| 30.
|
Yamasaki, Y.,
I. Hayashi,
Y. Ohta,
T. Nakagawa,
M. Kawamukai, and H. Matsuda.
1993.
Purification and mode of action of chitosanolytic enzyme from Enterobacter sp. G-1.
Biosci. Biotechnol. Biochem.
57:444-449.
|