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Journal of Bacteriology, February 1999, p. 791-798, Vol. 181, No. 3
0021-9193/99/$04.00+0
Copyright © 1999, American Society for Microbiology. All rights reserved.
Excretion of Endogenous Cadaverine Leads to a
Decrease in Porin-Mediated Outer Membrane Permeability
Hrissi
Samartzidou and
Anne H.
Delcour*
Department of Biology and Biochemistry,
University of Houston, Houston, Texas 77204-5513
Received 25 August 1998/Accepted 19 November 1998
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ABSTRACT |
The permeability of the outer membrane of Escherichia
coli to hydrophilic compounds is controlled by porin channels.
Electrophysiological experiments showed that polyamines inhibit ionic
flux through cationic porins when applied to either side of the
membrane. Externally added polyamines, such as cadaverine, decrease
porin-mediated fluxes of
-lactam antibiotics in live cells. Here we
tested the effects of endogenously expressed cadaverine on the rate of
permeation of cephaloridine through porins, by manipulating in a
pH-independent way the expression of the cadBA operon,
which encodes proteins involved in the decarboxylation of lysine to
cadaverine and in cadaverine excretion. We report that increased levels
of excreted cadaverine correlate with a decreased outer membrane
permeability to cephaloridine, without any change in porin expression.
Cadaverine appears to promote a sustained inhibition of porins, since
the effect remains even after removal of the exogenously added or excreted polyamine. The cadaverine-induced inhibition is sufficient to
provide cells with some resistance to ampicillin but not to hydrophobic
antibiotics. Finally, the mere expression of cadC, in the
absence of cadaverine production, leads to a reduction in the amounts
of OmpF and OmpC proteins, which suggests a novel mechanism for the
environmental control of porin expression. The results presented here
support the notion that polyamines can act as endogenous modulators of
outer membrane permeability, possibly as part of an adaptive response
to acidic conditions.
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INTRODUCTION |
The outer membrane of gram-negative
bacteria forms a natural barrier that protects the cell from harmful
agents such as proteases, some antibiotics, bile salts, and toxins. Its
permeability depends largely on porins, abundant trimeric proteins that
form nonspecific, mostly open channels. These proteins have been
characterized extensively at the biochemical and molecular levels
(33).
-Lactam antibiotics have been shown in intact cells
to permeate the outer membrane through porins at high rates,
strengthening the belief that porins are permanently open pores
(33). Many other biochemical and electrophysiological
studies of reconstituted purified porins have confirmed that porins are
mostly open pores (2, 9, 33). This property along with their
role as molecular filters that discriminate against solutes of high
molecular weight makes porins the major pathway for fast nutrient flux
in a highly protective outer membrane.
Recent patch-clamp studies on reconstituted porins, however, have
revealed that closures of porins are induced in the presence of
polyamines or membrane-derived oligosaccharides applied to the
periplasmic side (7, 9, 20). In addition, externally applied
polyamines inhibit the flux of
-lactam antibiotics through porins
and thus decrease the permeability of the outer membrane (8).
Polyamines are a class of naturally occurring polycationic molecules
that have been implicated in a wide range of biological phenomena,
including modulation of ion channels of heart, muscles, and neurons
(11, 22, 27). They are associated with the outer membrane of
Escherichia coli and are likely to accumulate in the periplasmic space during their synthesis and transport (4, 23, 25,
30). Cadaverine, one of the smallest polyamines, is the end
product of a pH-induced lysine decarboxylation. The E. coli
cadBA operon encodes a lysine decarboxylase (cadA) and a lysine-cadaverine antiporter (cadB) and is coinduced by
external low pH, anaerobiosis, and lysine (36, 40). A
positive regulator of cadBA expression has been identified
as the membrane-bound protein CadC, whose gene lies upstream to the
cadBA operon (10, 31, 32). The periplasmic domain
of CadC senses both external pH and lysine as positive regulators and
possibly cadaverine as a negative regulator of cadBA
(10, 32). Upon induction, CadC binds the cadBA
promoter and activates the operon. It is proposed that the acid-induced
synthesis of cadaverine from lysine by CadA and its subsequent
excretion through the lysine-cadaverine antiporter CadB lead to some
neutralization of the external pH, thus protecting the cell from the
acidic conditions. Under this mechanism, the levels of the endogenously
expressed and excreted cadaverine are increased during
cadBA-inducing conditions (28).
The study reported here was undertaken with the goal of understanding
the physiological relevance of porin inhibition by polyamines. Based on
our observations that polyamines inhibit porins from both membrane
sides (20) and that external polyamines decrease porin-mediated flux of antibiotics (8), we hypothesized that endogenous cadaverine should also affect the porin-mediated outer membrane permeability as it transits the periplasm and/or becomes excreted. To test this hypothesis, we induced the synthesis of cadaverine in three ways: (i) by low-pH induction, (ii) by placing both
cadA and cadB under the control of an
isopropyl-
-D-thiogalactopyranoside (IPTG)-inducible
promoter, and (iii) by constitutive cadBA expression from a
pH-independent cadC mutant. The results suggest that
multiple pathways are used for the decrease in outer membrane
permeability induced at acidic pH, including a reduction in porin
expression and a cadaverine-dependent inhibition of porin-mediated fluxes.
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MATERIALS AND METHODS |
Strains and plasmids.
E. coli K-12 strains were used,
and their relevant characteristics are shown in Table
1. Strains HS200, EP243, EP247, and EP314
are all derived from wild-type strain W3110 and are therefore isogenic
except for the genes being manipulated or a deletion of the
lac operon. For most of the antibiotic permeation assays, the
-lactamase-encoding R471a factor (15) was
introduced into the strains by conjugation as previously described
(6). Strain HN37 (kindly provided by H. Nikaido) was used as
the donor for the R factor, and the conjugants were selected on plates
containing mitomycin C (1 µg/ml) and ampicillin (100 µg/ml). For
antibiotic permeation assays on strains carrying plasmid pCADA (Table
1), the
-lactamase was produced from either the R471a
factor or a pBR322 plasmid. Other plasmids are described in Table 1. To
acquire a better control of lac promoter-dependent
expression of cadA and cadB, a
lacIq gene on an F factor was introduced in
strains harboring plasmids pCADA and/or pCADB by mating with E. coli XL1 (5). Successful conjugants (HS200) were
selected on minimal medium plates with lactose as the sole carbon
source and in the presence of tetracycline (15 µg/ml).
HS111, a strain deficient in OmpC and OmpF, was constructed as follows.
Strain AW739 (
19) was transformed with the replication
temperature-sensitive plasmid pMAK705 (
12) on which
ompF had
been cloned. P1 transduction was then used to move
an
ompC deletion
from strain AW738 (
ompC
zei::Tn
10) (
19) into the
chromosome.
The resulting strain expressed
ompF only when
grown at a temperature
permissive for maintenance of plasmid pMAK705
(30°C). To obtain
an
ompC ompF mutant strain, the cells
were grown at the nonpermissive
temperature (42°C) for 6 h in
liquid medium and then plated on
modified Luria-Bertani (MLB) plates in
the absence of antibiotics.
After overnight incubation at 30°C, 50 colonies were tested for
sensitivity to chloramphenicol (the antibiotic
marker carried
by pMAK705). Clones that did not grow in the presence of
the antibiotic
were identified and designated
HS111.
Growth conditions.
E. coli was normally grown in MLB
containing 1% tryptone, 0.5% yeast extract, and 0.5% NaCl, with the
pH adjusted to 7.0 with NaOH. For experiments where the effects of
growth at pH 7.6 and 5.8 were compared, cells were first grown for
1 h in MLB at pH 7.6 and harvested by centrifugation in two
centrifuge tubes. The pelleted cells were then resuspended in the same
volume of fresh MLB either at pH 7.6 or at pH 5.8 and allowed to grow
for 30 more min at 32°C before being harvested again for the various
assays. Buffering of MLB was done at pH 7.6 with 100 mM MOPS
[3-(N-morpholino)propanesulfonic acid] or at pH 5.8 with
100 mM MES [2-(N-morpholino)ethanesulfonic acid]
(10). For the experiments with strains carrying plasmids with lac-controlled genes, cells were grown in MLB at pH 7.6 to an optical density at 650 nm (OD650) of 0.3 before the
addition of IPTG at a final concentration of 1 mM. After growing
further to an OD650 of 0.6 (~1 h), the cells were
harvested for assay. Strains that express cadA from plasmid
pCADA grow as fast as the wild-type strain, but strains that
overexpress cadA and cadB grow slowly.
Plasmid-containing cells were grown in the presence of the appropriate
antibiotic at the following concentration: ampicillin
sodium salt, 100 µg/ml; kanamycin sulfate or spectinomycin, 50
µg/ml; or
tetracycline, 15 µg/ml. All cultures, solid and liquid,
were
maintained at 32°C. This was necessary for maintenance of
the Mu
dI
1734 prophage in strains EP243 and EP314 and thus was
used
for growth of all strains. Antibiotics and organic chemicals
were
purchased from Sigma Chemical Co., inorganic chemicals were
purchased
from Fisher Scientific, and medium components were purchased
from Difco
Laboratories.
Preparation of porin extracts and SDS-urea-PAGE.
Cells from
overnight cultures were washed in 30 mM Tris (pH 8.1) and broken by
Tris-EDTA-lysozyme treatment followed by sonication (three 20-s
bursts). After removal of the unbroken cells, the supernatant was
centrifuged again at 65,000 rpm for 15 min, to collect the cell
envelopes. The final pellet was resuspended in 50 mM KCl-5 mM HEPES-1
mM K-EGTA (pH 7.2); 30 µg of protein was analyzed by sodium dodecyl
sulfate-urea (6 M)-polyacrylamide gel electrophoresis (SDS-urea-PAGE).
The level of porin expression was quantified with an EagleEye
densitometer and calculated relative to OmpA (standard control).
Antibiotic permeation assays.
The rates of permeation of the
-lactam antibiotic cephaloridine were determined as described
elsewhere (35). Fifteen-milliliter cultures were inoculated
from overnight cultures and grown at 32°C in MLB supplemented with 5 mM MgCl2 to an OD650 of 0.6. The cells were
harvested, washed twice in permeability buffer (10 mM
NaH2PO4, 5 mM MgCl2 [pH 6.0]),
and resuspended in 6 ml of the same buffer. One hundred microliters of
cells was mixed with 300 µl of permeability buffer and 100 µl of a
5 mM cephaloridine stock solution; 400 µl of the mixture was
transferred immediately to a 1-mm-path-length quartz cuvette, and the
rate of cephaloridine degradation by the periplasmic
-lactamase was
measured as a decrease in A260 in a Unikon 810 double-beam spectrophotometer (Kontron Instruments). Continuous
readings were taken for 4 min following addition of the antibiotic.
Such measurements were performed with both intact cells and cell-free
culture supernatants as a control for any possible enzyme leakage from
the periplasm. Typically, supernatant values were less than 5% of the
rate measured with intact cells, and the measured rates were not
corrected for leakage.
Cadaverine excretion assay.
Fresh cultures inoculated from
overnight cultures were grown at 32°C with shaking to an
OD650 of 0.6. The cells were then pelleted, and the
supernatant was tested for cadaverine content. All reagents and
procedures were as described elsewhere (37), with the
following modifications. One milliliter of culture supernatant was
mixed with 1 ml of K2CO3 and 1 ml of 10.2 mM of
2',4',6'-trinitrobenzylsulfonic acid, and the mixture was incubated for
5 min at 42°C. The colored product,
N,N'-bistrinitrophenylcadaverine, was extracted
with 2 ml of toluene after vortexing for 20 s and centrifugation
at 2,500 rpm for 5 min. The A340 of the extract
was read. Appropriate medium blanks were used to verify that trace
amounts of other amines and amino acids present in the supernatant did
not interfere with the cadaverine measurement. Standard curves show
that the assay is linear between absorbance values of 0.1 and 1.0, the latter corresponding to 250 µM cadaverine.
Antibiotic sensitivity assay.
Cells were grown in MLB (pH
7.6) at 32°C. For cells containing pCADA, IPTG was added 1 h
after the growth culture started. When the OD650 of the
culture reached 0.6, the culture was split into two batches, one of
which received the antibiotic to be tested. After a 1-h incubation at
32°C with shaking, each batch was diluted, and a 100-µl aliquot was
plated onto LB plates and maintained at 32°C overnight. A viable
count was obtained from the number of colonies present the next day,
and percent survival in the presence of the antibiotic was calculated.
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RESULTS |
pH-induced decrease in porin expression and outer membrane
permeability.
Growth at pH 5.8 induces a change in outer membrane
composition seen as a reduction in total porin expression. A 30-min
exposure to acidic pH during growth promoted a major (34% ± 18%
[mean ± standard deviation {SD}; n = 3)
decrease in OmpF expression and no significant change in OmpC
expression (decreased by 3% ± 5%, n = 3), as shown
previously (16). These values were obtained by using the
constant levels of OmpA as an internal control. Figure 1A shows that the total amount of porins
(total porin expression = OmpC + OmpF) is reduced by 14% ± 9% at pH 5.8. The flux of cephaloridine measured in cells grown at
this low pH is also lower than that in cells grown at pH 7.6. The 32%
decrease in flux likely arose from not only the reduced abundance of
porins in the membrane but also from the shift in the relative
proportion of OmpC and OmpF in favor of OmpC, which has a narrower
pore.

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FIG. 1.
(A) Effect of acidic pH on outer membrane permeability
and porin expression in E. coli wild-type strain W3110
containing the R471a factor and grown at pH 7.6 (black) or
5.8 (white). The flux rate (absolute value of [5.2 ± 0.3] × 10 5 cm/s) and total porin expression of cells grown at pH
7.6 were set to 100%. Bars for flux data represent the averages of
four experiments (triplicate measurements per experiment), and the
error bars indicate SEM; bars for porin expression data represent the
averages of three experiments (±SD), one of which is shown in panel B. (B) Representative SDS-urea-PAGE analysis of outer membrane proteins
obtained from W3110 grown at pH 7.6 (lane 1) or 5.8 (lane 2).
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A drop in pH is known to have pleiotropic effects on cells (
36,
40). Are there other factors that might contribute to
the flux
reduction when cells have been grown at acidic pH? A
well-documented
response to acidic pH is the induction of the
cad operon,
which leads to the excretion of cadaverine (
28,
36,
40), a
known inhibitor of porin function (
7,
20).
Upon acid
induction in the presence of lysine, the
cadBA operon
activated by the positive regulator CadC expresses large quantities
of
lysine decarboxylase (
32). The low-pH exposure used in the
previous experiments also resulted in the excretion of a large
amount
of cadaverine into the medium. The average concentration
of external
cadaverine in the growth medium of the wild-type strain
W3110 jumped
from 25 to 350 µM (
n = 8) upon a decrease in pH from
7.6 to 5.8. Although no lysine was added directly, sufficient
induction
of the
cadBA can be obtained in LB medium at pH 5.8
(
36a).
The endogenous production of cadaverine decreases outer membrane
permeability.
To determine whether the endogenous production of
cadaverine leads to a decrease in outer membrane permeability
independently from changes in porin levels, we decided to bypass the
induction by pH and test directly the effect of inducing expression of
the cadA and cadB genes.
We introduced into the wild-type strain W3110 an F' episome containing
the
lacIq gene and used this strain (HS200) as a
host for the plasmids
pCADA and pCADB, which encode
cadA and
cadB under the control
of the
lac and
tac promoters, respectively (see Materials and
Methods and
Table
1). All experiments were performed at pH 7.6
to ensure that there
was little expression of the chromosomal
cadBA operon.
Three types of measurements were made: (i) rate of cephaloridine
permeation through porins, (ii) total porin expression, and
(iii)
amounts of cadaverine excreted. Figure
2
shows the results
for cells grown in the presence of 1 mM IPTG.
Expression of both
the
cadA and
cadB genes leads
to a 10-fold increased amount of
excreted cadaverine, with medium
concentrations reaching 200 µM.
Intermediate values are observed when
only the
cadA gene is present.
Presumably, the export of
cadaverine is still possible in these
conditions because of a low-level
expression of chromosomal
cadB or via transporters other
than the lysine-cadaverine exchanger.
The expression of OmpC and OmpF
(normalized to OmpA levels used
as a loading control) is not affected
by the presence of external
cadaverine, as shown in Fig.
2A (the 9% ± 10% increase in the
presence of pCADA and pCADB is not significant;
P > 0.05,
n =
3) and B. The amounts of OmpC and
OmpF relative to OmpA were found
to be, respectively, 1.20 ± 0.50 and 0.73 ± 0.13 for HS200, 1.15
± 0.06 and 0.89 ± 0.16 for HS200/pCADA, and 1.25 ± 0.14 and 0.87
± 0.08 for
HS200/pCADA/pCADB. Although a slight increase in OmpF
expression is
found in the latter two strains, none of the values
obtained from
strains containing the plasmids are significantly
different from those
for the control strain HS200 (
P > 0.05,
n = 3).

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FIG. 2.
(A) Outer membrane permeability, total porin expression,
and excreted cadaverine in strains HS200/pBR322 (black),
HS200/pCADA/pBR322 (white), and HS200/pCADA/pCADB (hatched). The left
ordinate represents the ratio of the flux rate and total porin
expression in the presence of CadA or CadBA to that in the absence of
CadA and CadB. Bars for flux and excreted cadaverine data represent the
averages of four experiments (triplicate measurements per experiment),
and the error bars indicate SEM. Bars for total porin expression
represent the averages of three experiments (error bars indicate SD),
one of which is shown in panel B. The rate of permeation in the control
strain HS200/pBR322 was 5.2 10 5 cm/s. (B) Representative
SDS-urea-PAGE of outer membrane proteins obtained from HS200/pBR322
(lane 1), HS200/pCADA/pBR322 (lane 2), and HS200/pCADA/pCADB (lane 3).
The minus sign in the CadC row indicates that CadC was not activated.
(C) Outer membrane permeability and excreted cadaverine in
HS200/R471a (black) and HS200/R471a/pCADA
(white). The left ordinate represents the ratio of the flux rate in the
presence of CadA to that in the absence of CadA. Bars represent the
averages of three experiments (triplicate measurements per experiment),
and the error bars indicate SEM.
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The extent of

-lactam flux through porins is, however, greatly
inhibited when the
cadA and
cadB genes are
expressed (Fig.
2A). The amounts of excreted cadaverine and maximum
inhibition
are observed under conditions when both the lysine
decarboxylase
and the lysine-cadaverine antiporter are produced. The
strong
correlation between the decrease in flux and increase in
secreted
cadaverine, coupled with the steady levels of porin
expression,
suggests that flux inhibition is mediated through a
cadaverine-dependent
effect on porin function. Reduced cadaverine
excretion (
A340 of
0.1 or 0.3 in the presence of
plasmid pCADA alone or with pCADB,
respectively) and a smaller
inhibition of antibiotic flux (25%
or 30% in the presence of plasmid
pCADA alone or with pCADA and
pCADB, respectively) were also obtained
in the absence of IPTG,
because of the well-known leakiness of these
plasmids (
1a).
Despite the presence of the single copy of
the
lacIq gene, the
lac operon is
intrinsically leaky, especially on high-copy-number
plasmids.
Although plasmids pCADA and pCADB have been used together by others
(
28), there was concern about the validity of the results
in
Fig.
2A and B because the two plasmids share the same origin
of
replication and may be incompatible (both are ColE1 derivatives).
To
address this issue, we grew cells containing the two plasmids
in
exactly the same conditions as used for the flux assays and
plated them
in the presence of either ampicillin or kanamycin
or both. In all
cases, the numbers of CFU were identical. In addition,
we picked the
colonies grown on kanamycin and tested them for
ampicillin sensitivity;
all were found to be resistant. These
experiments clearly indicate that
both plasmids are stably maintained,
which is not surprising because
they are multicopy plasmids and
carry different antibiotic resistance
markers.
Since one might still question whether the results are influenced by
fluctuations in plasmid copy numbers, we repeated the
experiments shown
in Fig.
2A and B with cells that express

-lactamase
from the
R
471a factor and do or do not harbor pCADA as well (the
two
plasmids are compatible). As shown in Fig.
2C, a 50% ± 10%
inhibition of cephaloridine flux is observed concomitantly with
a
6.3-fold increase in cadaverine production in cells that harbor
pCADA.
An SDS-urea-PAGE analysis demonstrated that levels of porin
expression
were identical in cells lacking and cells containing
plasmid pCADA
(total amounts of OmpC plus OmpF relative to OmpA
were 1.25 and 1.34 in
the absence and presence of pCADA, respectively).
These observations
agree with the results in Fig.
2A and B and
demonstrate that cadaverine
inhibits porin function to the same
extent, regardless of the plasmid
combination
used.
To substantiate the above data, we controlled the expression of
cadA differently but still in a pH-independent way. We
transformed
EP247 (CadA
+) and EP314 (CadA

),
two strains derived from the wild-type strain W3110, with plasmid
pCD470, which expresses a constitutively active
cadC mutant
allele
(
cadCc) (Table
1). Both strains have a
transposon insertion in the
chromosomal
cadC gene and thus
produce CadC only from the plasmid-borne
gene
cadCc. This mutant CadC protein is insensitive
to pH and confers permanent
activation of the
cadBA operon
(
10). Figure
3A shows
measurements
of

-lactam flux, total porin expression levels, and
amounts of
excreted cadaverine. Since these two strains have the same
genetic
background, we set to 100% the flux rate and total porin
expression
obtained in the CadA

strain
(EP314/
cadC
c) and plotted the relative values
for the CadA
+ strain (EP247/
cadC
c).
Any observed difference between the two strains can be attributed
solely to the presence of CadA and the resulting cadaverine excretion.

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FIG. 3.
(A) Outer membrane permeability, total porin expression,
and excreted cadaverine in strains EP314/cadCc
(black) and EP247/cadCc (white), containing the
-lactamase-encoding plasmid R471a. The
cadCc allele is constitutive and allows
cadaverine production in EP247 (CadA+). The flux rate
(absolute value of 4.2 10 5 cm/s) and total porin
expression of EP314/cadCc are set to 100%. Bars
for flux and excreted cadaverine data represent the averages of four
experiments (triplicate measurements per experiment), and error bars
indicate SEM; the bars for total protein expression represent the
averages of three experiments (±SD), one of which is shown in panel B. (B) Representative SDS-urea-PAGE analysis of outer membrane proteins
obtained from EP314/cadCc (lane 1) and
EP247/cadCc (lane 2). (C) R471a
factor-containing strains EP314 (CadA CadC ;
black bars) and EP314/pCD470 (CadA CadC+
constitutively; white bars) were grown at pH 7.6. The cephaloridine
flux rate (absolute value of [5.1 ± 0.1] × 10 5
cm/s) and total porin expression in the absence of constitutively
expressed cadC are set to 100%. Bars for flux and
cadaverine data represent the averages of four and three experiments,
respectively (triplicate measurements per experiment), and the error
bars indicate SEM; the bars for total protein expression represent the
averages of three experiments (±SD), one of which is shown in panel D. (D) SDS-urea-PAGE analysis of outer membrane proteins obtained from
EP314 (lane 1) and EP314/cadCc (lane 2).
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Figure
3A shows that the pH-independent expression of
cadA
leads to greatly enhanced excretion of cadaverine (external
concentration
of 200 µM) but no change in the level of porin
expression. The
amounts of OmpC and OmpF relative to OmpA were found to
be, respectively,
0.88 ± 0.07 and 0.67 ± 0.11 for the
CadA

strain (EP314/
cadC
c) and
0.89 ± 0.04 and 0.67 ± 0.18 for the CadA
+
strain (EP247/
cadC
c) (
n = 3 for all).
The excretion of cadaverine is accompanied
by a significant decrease in
porin-mediated cephaloridine flux
(Student
t test,
P < 0.05). These results agree with those shown
in
Fig.
2 and support the hypothesis that the inhibition of porin-mediated
flux is due to cadaverine, not to a reduction in porin amounts.
They
also document that external cadaverine does not regulate
expression of
the
ompC and
ompF
genes.
CadC alone influences porin expression and outer membrane
permeability.
As a control for the experiments described above, we
compared the antibiotic flux rates and porin levels of EP314 in the
presence and the absence of the constitutively expressed
cadCc allele. Figures 3C and D show that,
surprisingly, the mere expression of cadC leads to a
reduction of porin level and the resulting decrease in cephaloridine
flux. It is important to point out that EP314 has a transposon
insertion in cadA, and the resulting CadA
phenotype leads to no cadaverine excretion, even in the presence of
constitutive CadC (Fig. 3C).
Interestingly, the profile of porin expression obtained through a
CadC-dependent means of regulation is slightly different
from that
induced by a drop in pH. The constitutive expression
of
cadC
leads to a decrease in amounts of both OmpF (by 15% ±
5%,
n = 3) and OmpC (by 25% ± 5%,
n = 3), not only OmpF as in
Fig.
1B. The control exerted by CadC over
the expression of porin
genes may originate from cross-talk with the
OmpR regulatory system
(see Discussion). It represents a novel
mechanism by which acidic
pH can control outer membrane
permeability.
Sustained inhibition of porins by cadaverine.
Since the cells
are washed of the externally released cadaverine before the
permeability assay, how can cadaverine still exerts an inhibitory
effect on porin during the measurement of antibiotic permeation?
One possibility is that there is a continuous excretion of cadaverine
during the time required to set up and perform the flux
assay (~10
min). Figure
4A shows that this is not
the case. Immediately
after the cadaverine-excreting cells were washed
twice and resuspended
in permeability buffer (0 min), the amount of
external cadaverine
drops to the background level observed in control
cells that do
not make cadaverine. This low level of cadaverine
extrusion is
maintained for at least 60 min. Thus, the inhibition of
cephaloridine
flux observed after cadaverine-excreting cells had been
resuspended
in permeability buffer for ~10 min (Fig.
2 and
3) cannot
be attributed
to the presence of external cadaverine during the flux
assay.

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FIG. 4.
Measurements of external cadaverine (i) in permeability
buffer at various times after strain HS200/pBR322 (circles) and
HS200/pCADA/pCADB (squares) cells had been washed and resuspended in
this buffer and (ii) in medium at the end of growth (MLB; i.e., 15 min
before resuspension in permeability buffer). Symbols represent the
averages of four experiments (error bars indicate SEM and sometimes lie
within the thickness of the symbol). For panel B, cells were spun at
the 10-min time point (arrow) and resuspended in permeability buffer
containing 10 mM lysine (Lys). The presence of external lysine does not
interfere with the cadaverine assay (37).
|
|
The lysine decarboxylase and lysine-cadaverine antiporter are still
present in the cell though, because a boost in cadaverine
excretion can
be obtained when 10 mM lysine is provided. For the
experiment
represented in Fig.
4B, cells remained in permeability
buffer for 10 minutes and then were spun down and resuspended
in permeability buffer
containing 10 mM lysine (pH adjusted to
6.0). Within 20 min after
lysine addition, the amount of excreted
cadaverine had increased more
than 20-fold. Interestingly, the
extent of antibiotic flux inhibition
remained unchanged after
the lysine-induced boost in cadaverine
excretion (data not
shown).
An alternative explanation for the antibiotic flux reduction is that
the excretion of cadaverine during growth has produced
an effect on
porin function that is retained even after removal
of the external
polyamine. To test this hypothesis, we performed
the following
experiment. We grew the wild-type strain W3110 at
pH 7.6, a condition
in which it does not excrete cadaverine. After
being washed with
permeability buffer, the cells were resuspended
in permeability buffer
with or without 100 mM external cadaverine,
and incubated for 5 or 30 min. At the end of the incubation period,
an aliquot of cells was
assayed for cephaloridine flux rate in
the presence of the external
cadaverine initially added. The remaining
cells were washed twice of
the external cadaverine, resuspended
in permeability buffer for 5 min,
and then tested for antibiotic
flux rate in the absence of external
cadaverine. Figure
5 shows
that the
presence of 100 mM external cadaverine during the flux
assay has
reduced the cephaloridine rate by ~40%, as shown previously
(
8), and that the inhibition is maintained even after the
external
cadaverine has been removed by washing.

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|
FIG. 5.
Cadaverine induces a sustained inhibition of porins.
Cephaloridine flux rates were obtained from wild-type strain W3110
containing the R471a factor. The following treatments were
carried out in parallel for each batch of cells: (i) cells were
incubated in permeability buffer in the presence (black) or absence
(white) of 100 mM cadaverine for the times indicated and assayed
immediately thereafter in the same solution; and (ii) cells were
incubated in permeability buffer in the presence (horizontal stripes)
or the absence (hatched) of 100 mM external cadaverine for the times
indicated, spun down, resuspended in permeability buffer only, and
assayed in permeability buffer only. Values are the averages of four
experiments (triplicate measurements per experiment), and error bars
represent SEM.
|
|
This experiment shows that a prolonged effect on outer membrane
permeability is elicited by the presence of external cadaverine
and
retained after removal of the polyamine. This inhibition is
rapid,
being completed within 5 min, with no additional effect
after 30 min of
incubation. Such apparently irreversible inhibition
is in agreement
with results of our electrophysiology experiments.
When cadaverine is
applied to the periplasmic side of porin-containing
membrane patches, a
rapid decrease in porin-mediated current is
observed due to the
permanent closure or inactivation of a number
of pores. Such an effect
remains even after the polyamine has
been washed away from the patch
(
7,
20). Mechanisms for this
intriguing form of inhibition
are suggested in
Discussion.
Physiological impact.
To assess the extent of outer membrane
permeability in the exact environmental conditions that are experienced
by the cells, we measured the antibiotic flux directly in the growth
medium from which they were harvested. Although the medium is rich in compounds absorbing at 260 nm (the wavelength used for the antibiotic flux assay), we were able to blank the sample successfully, most likely
because of the use of a 1 mm-path-length cuvette. In growth medium, the
flux rate was (2.8 ± 0.2) × 10
5 cm/s for control
cells that do not produce cadaverine (HS200/pBR322; the plasmid encodes
the
-lactamase) and (1.1 ± 0.2) × 10
5 cm/s for
cells that excrete cadaverine (HS200/pCADA/pCADB; average cadaverine
concentration, 200 ± 15 µM [n = 3]). The
reduced cephaloridine flux observed with cells that excrete cadaverine
is comparable whether cells are maintained in their own growth medium
or washed in permeability buffer ([1.8 ± 0.2] × 10
5 cm/s). This result is another example of the
prolonged nature of the inhibition, as discussed above. Even in the
absence of cadaverine, the flux rate measured in growth medium is much
lower than that of the same cells washed in permeability buffer
([5.3 ± 0.8] × 10
5 cm/s). The rate may be lower
in growth medium because many porin channels are occupied by nutrients
fluxing into the periplasm or because of the presence of yet
unidentified inhibitors. It is worth noting that the combined presence
of the medium and the released cadaverine results in 80% reduction in
outer membrane permeability compared to the values traditionally
measured in permeability buffer.
Since

-lactam antibiotics use porins as an uptake pathway, the
cadaverine-induced porin inhibition is expected to restrict
the entry
of these types of antibiotics and possibly to provide
the cells with
some resistance. We tested this hypothesis by measuring
the survival of
cells in the presence of one of the following
antibiotics at a
concentration close to its MIC: ampicillin (5
µg/ml), which uses
porins to gain access to its periplasmic target,
or polymyxin B (2.5 µg/ml) or erythromycin (50 µg/ml), which both
enter the cell
through a lipid-mediated pathway (
13). Percent
survival was
calculated as the ratio of viable counts from cells
grown for 1 h
in the presence of the antibiotic to those of cells
grown in the
absence of the antibiotic. We found that only 66%
± 8% of wild-type
(HS200) cells survived in a medium containing
5 µg of ampicillin per
ml, while wild-type cells containing plasmid
pCADA were not affected by
the presence of the antibiotic at this
concentration (109% ± 5%
survival). Cells containing plasmid pCADA
grow as fast as wild-type
cells, and so the resistance of the
cadaverine-producing cells to
ampicillin is not due to changes
in growth rate. The presence of
plasmid pCADA resulted in the
excretion of 125 ± 12 µM
cadaverine (as opposed to 17 ± 12 µM
for cells lacking the
plasmid). Higher concentrations of ampicillin
(>50 µg/ml) were,
however, equally effective at killing cells
regardless of their ability
to produce cadaverine. It is noteworthy
that cadaverine-excreting cells
displayed no change in sensitivity
to 2.5 µg of polymyxin B per ml
(survival of 7% ± 1% in HS200
and 8% ± 1% in HS200/pCADA) or 50 µg of erythromycin per ml (survival
of 47% ± 10% in HS200 and 48% ± 12% in HS200/pCADA), even though
similar amounts of cadaverine had
been released. In conclusion,
the production of cadaverine confers some
resistance specifically
to antibiotics requiring porins for
uptake.
 |
DISCUSSION |
The outer membrane of E. coli behaves as an effective
molecular filter whose permeability depends mostly on porins. We
previously documented that externally applied polyamines, including
cadaverine, effectively decrease outer membrane permeability by
promoting porin closure (7, 20). This observation, in
conjunction with the well-known environmental control of the bacterial
polyamine pools (30, 36, 40), raises some important issues.
Can endogenous polyamines modulate porin activity? Can this modulation
be part of a mechanism to respond to environmental changes? What is the physiological significance of porin inhibition by polyamines? The
present study is an initial attempt to answer such questions.
We assessed outer membrane permeability from the rate of
-lactam
antibiotic permeation, a process that requires the presence of
functional porins for maximum efficiency (14, 34). We chose to manipulate the endogenous levels of cadaverine because this polyamine is the end product of a pH-dependent degradative pathway that
has been well characterized (36, 40). Because of the pleiotropic effect of acidic pH on cells and outer membrane function in
particular (16, 26, 36, 39, 40), we designed strategies that
bypassed the drop in pH to isolate effects on porins that are due
solely to the production of cadaverine. Our results clearly demonstrate
that increased synthesis and excretion of cadaverine in these
conditions correlate with a decreased porin-mediated outer membrane
permeability, independently of the method used to induce the production
of endogenous cadaverine. The cadaverine-mediated inhibition of outer
membrane permeability resulted solely from a modulation of porin
function, not from a cadaverine-dependent modification in porin expression.
Our results suggest that cadaverine triggers a form of sustained
inactivation of porins. This phenomenon is seen in electrophysiological experiments (7, 20) as well as in antibiotic flux assays with cadaverine added exogenously or produced endogenously. The retention of the inactivation is prolonged and does not require the
continued excretion of the polyamine, since we have measured inhibited
flux rates even 60 min after the cadaverine has been washed away. The
molecular nature of this puzzling form of inhibition is unclear, and we
can only offer some speculative explanations at this point.
Patch-clamp experiments show a lack of effectiveness of cadaverine when
applied to the extracellular side of the patch and suggest that the
polyamine may exert its effect by binding to a periplasmic site
(20). Thus, we propose that in the experiments described
here, the transit of cadaverine through the porins and/or the binding
of cadaverine to a periplasmic site is responsible for the inhibition.
It is difficult to imagine that the irreversibility of the effect stems
from cadaverine being trapped in the periplasm because the molecular
mass of cadaverine (102 Da) is below the 600-Da cutoff for permeation
through porin. In addition, a porin-deficient strain (HS111 [Table
1]) is still capable of excreting substantial amount of cadaverine (up
to 450 µM) in low-pH conditions through an OmpF/C-independent
pathway. Therefore, the sustained inhibition of porin may be due either
to an extremely tight binding of cadaverine to the protein or to an
irreversible conformational change that was triggered by the
interaction between porin and the polyamine. Alternatively, despite
their low molecular weight, cadaverine molecules might still become
stuck during their passage through porins as their interactions with
the pore lead to conformational changes that trap them. It is
noteworthy that some drugs can become trapped inside some types of
eukaryotic ion channels (17, 18).
From the results presented here, we propose that multiple pathways
exist for the reduction of outer membrane permeability in response to
acidic conditions. Some forms of modulation of outer membrane
permeability, such as the envZ-dependent shutdown of porin
expression (16) and the functional closure of open porin
pores (26, 39) at acidic pH, have been already documented. Here we propose that two additional mechanisms play a part in the
overall response to acidic conditions: porin inhibition by cadaverine,
and a cadC-dependent reduction in porin expression. Both
processes affect only a fraction of the porin population, leaving
enough open pores for nutrient import.
The inhibition of OmpC and OmpF expression triggered by the presence of
the constitutive cadCc allele in a
cadA mutant background prompted us to search for sequence
identities in the promoter regions of ompC, ompF,
and the cadBA operon. Figure 6
shows an alignment of the
77 to
157 region of the cadBA
operon with upstream regions of ompC and ompF. The underlined nucleotides of the cadBA promoter region
represent the essential residues required for acid induction of the
operon (29), which presumably interact with the CadC
protein. The sequence alignment yields 58 or 63% identity between the
77 to
157 region of cadBA and the
118 to
201 region
of ompC or the
105 to
189 region of ompF,
respectively. One of the underlined sequences of cadBA
(TTTATCTTTT) is almost completely conserved in the upstream sequences of ompC and ompF. This cadBA
motif was shown to be the one most essential for regulation of
cadBA expression (29). Thus, it seems likely that
CadC interacts with these ompC and ompF sequences
in a fashion that leads to regulation of porin expression. It is
noteworthy that these sequences lie further upstream than important
regions for the transcriptional control exerted by OmpR on the
ompF and ompC genes (38). In addition, some level of homology is found between the cadBA motif and
the Fa and Fd boxes of ompF and ompC,
respectively. These F boxes form part of the binding site for OmpR on
the porin gene (38). Thus, in addition to a specific
interaction of CadC with the porin promoters, cross-talk with the
OmpR-dependent pathway may also occur. Alternatively, stimuli that feed
onto OmpR may also influence CadC-dependent promoters. Interestingly,
amino acid sequence homologies have been found between the DNA-binding
regions of CadC, OmpR, and ToxR, suggesting that CadC may belong to a
family of two-component regulators (41).

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|
FIG. 6.
Nucleotide sequence alignment of promoter regions of
ompC, ompF, and the cadBA operon. The
sequences were aligned by performing pairwise comparisons with the
ALIGN program (University of Wisconsin Genetics Computer Group
software), with some minor adjustments made by visual inspection. Dots
mark positions of identical nucleotides; underlined nucleotides
represent the motif essential for acid induction of the
cadBA operon (29).
|
|
It is generally supposed that polyamines might help survival at low pH
because their excretion would lead to a neutralization of the external
milieu (36, 40). This hypothesis is difficult to reconcile
with our finding that the pH of the medium is slightly decreased even
when large amounts of cadaverine are excreted, probably because the
CO2 released by the pH-induced decarboxylation of amino
acids leads to further acidification. Thus, the role for polyamines in
the pH response might be other than acid neutralization. Polyamine-mediated response to low pH appears to involve a combination of accumulation of cadaverine and other polyamines in the periplasm, porin inhibition, export through the remaining open porins and other
porin-independent pathways, and accumulation in the external milieu.
The results presented here support the proposition that cadaverine can
act as an endogenous modulator of porin-mediated outer membrane
permeability. Porin inhibition by periplasmic cadaverine or by
cadaverine in transit is likely to take place before large amounts of
the polyamine have diffused outside. The presence of the polyamine
molecules in the medium might be an epiphenomenon of their accumulation
in the periplasm, without a direct physiological role; alternatively,
their association with the external lipopolysaccharides (25)
may help stabilize and tighten the outer membrane. This sequence of
events may represent one of the strategies in the defense and
adaptation mechanisms to acidic stress. The assessment of the
contribution of porin inhibition to the overall adaptive response will
emerge from future studies with polyamine-resistant porin mutants.
 |
ACKNOWLEDGMENTS |
We gratefully acknowledge the gift of strains and plasmids from
Eric Olson, Herbert Tabor, George Bennett, and Hiroshi Nikaido. We
thank Michael Benedik for useful discussions and reading the manuscript, and we thank Bill Widger for the use of the spectrophotometer.
This work was supported by NIH grant AI34905.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Department of
Biology and Biochemistry, University of Houston, Houston, TX
77204-5513. Phone: (713) 743-2684. Fax: (713) 743-2636. E-mail:
adelcour{at}uh.edu.
 |
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Journal of Bacteriology, February 1999, p. 791-798, Vol. 181, No. 3
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Copyright © 1999, American Society for Microbiology. All rights reserved.
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