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Journal of Bacteriology, May 2000, p. 2696-2701, Vol. 182, No. 10
Department of Bioengineering, Tokyo Institute
of Technology, Nagatsuta, Midori-ku, Yokohama 226-8501, Japan
Received 15 September 1999/Accepted 11 February 2000
The Corynebacterium glutamicum mutant KY9714,
originally isolated as a lysozyme-sensitive mutant, does not grow at
37°C. Complementation tests and DNA sequencing analysis revealed that
a mutation in a single gene of 1,920 bp, ltsA (lysozyme and
temperature sensitive), was responsible for its lysozyme sensitivity
and temperature sensitivity. The ltsA gene encodes a
protein homologous to the glutamine-dependent asparagine synthetases of
various organisms, but it could not rescue the asparagine auxotrophy of
an Escherichia coli asnA asnB double mutant. Replacement of
the N-terminal Cys residue (which is conserved in glutamine-dependent
amidotransferases and is essential for enzyme activity) by an Ala
residue resulted in the loss of complementation in C. glutamicum. The mutant ltsA gene has an amber
mutation, and the disruption of the ltsA gene caused
lysozyme and temperature sensitivity similar to that in the KY9714
mutant. L-Glutamate production was induced by elevating
growth temperature in the disruptant. These results indicate that the
ltsA gene encodes a novel glutamine-dependent
amidotransferase that is involved in the mechanisms of formation of
rigid cell wall structure and in the L-glutamate production
of C. glutamicum.
Coryneform bacteria are rod-shaped,
nonsporulating, gram-positive bacteria that are widely distributed in
nature. The nonpathogenic species Corynebacterium
glutamicum, Brevibacterium lactofermentum, and
Brevibacterium flavum are used for fermentative production of amino acids such as L-glutamic acid (16),
L-lysine (21), and L-threonine
(26). Recently, B. lactofermentum and B. flavum were reclassified as C. glutamicum
(18).
C. glutamicum was originally isolated as a
glutamate-producing bacterium (16, 30). Induction of
glutamate excretion by C. glutamicum requires biotin
limitation (27) or treatment with penicillin (22)
or a fatty acid ester surfactant (28). Since these
treatments correlated with alterations in cell surface structure, it
had been thought that glutamate leaks passively through a membrane. Recently, several findings that do not agree with the leakage model
have been reported (9, 12, 15). However, the mechanism of
the glutamate production and excretion of C. glutamicum is still unknown.
Coryneform bacteria have thick cell walls consisting of two layers. The
inner layer, which consists mainly of peptidoglycan, invaginates to
form the septum. The outer layer, which consists mainly of mycolic
acid, breaks after cell division, resulting in postfission movement and
the cell arrangements characteristic of these bacteria. C. glutamicum shows high tolerance to lysis by lytic enzymes, such as
egg white lysozyme, that catalyze hydrolysis of the As the first step in analyzing the cell wall structure of coryneform
bacteria and the relationship between glutamate production and the
treatments that affect cell surface integrity, we analyzed lysozyme-sensitive mutants of C. glutamicum.
Bacterial strains, growth condition, and plasmids.
C.
glutamicum wild-type strain KY9611 and lysozyme-sensitive mutant
KY9714 were obtained from Kyowa Hakko Kogyo Co., Ltd. (Tokyo, Japan).
The method for isolation of lysozyme-sensitive mutants was described by
Katsumata et al. (13). Escherichia coli K-12
strain JM109 [recA1 endA1 gyrA96 thi hsdR17 supE44 relA1
0021-9193/00/$04.00+0
Copyright © 2000, American Society for Microbiology. All rights reserved.
A Mutation in the Corynebacterium glutamicum ltsA Gene
Causes Susceptibility to Lysozyme, Temperature-Sensitive
Growth, and L-Glutamate Production
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ABSTRACT
Top
Abstract
Introduction
Materials and Methods
Results
Discussion
References
![]()
INTRODUCTION
Top
Abstract
Introduction
Materials and Methods
Results
Discussion
References
-1,4 glycoside
bond between the N-acetylglucosamine and N-acetylmuramic acid of peptidoglycan. This is probably
because the outer layer, mainly consisting of mycolic acid, gives
enough resistance against cell lysis to this bacterium and/or functions as a permeability barrier.
![]()
MATERIALS AND METHODS
Top
Abstract
Introduction
Materials and Methods
Results
Discussion
References
(lac-proAB)/F' (traD36 proAB+
lacIq lacZ
M15)]
(33) was used for recombinant DNA procedures. For the
preparation of plasmid DNA for the transformation of C. glutamicum, JM110 [dam dcm supE44 hsdR17 thi leu rpsL1 lacY
galK galT ara tonA thr tsx
(lac-proAB)/F'
(traD36 proAB+ lacIq
lacZ
M15)] (33) was used to escape
from the restriction system of C. glutamicum. E. coli ER strain (asnA31 asnB32 thi) (3, 31)
was used as an asparagine auxotroph mutant.
1 for
C. glutamicum and 20 µg of kanamycin ml
1, 25 µg of ampicillin ml
1, or 40 µg of chloramphenicol
ml
1 for E. coli.
Lysozyme sensitivity and temperature sensitivity checks.
For
the temperature sensitivity check, 10-fold serial dilutions of cultures
were spotted onto L plates, and the plates were incubated at 30 or
37°C for 24 h. For the lysozyme sensitivity check, L plates
containing 50 µg of lysozyme ml
1 were used and plates
were incubated at 30°C.
Cloning of the ltsA gene.
Chromosomal DNA of the
C. glutamicum wild-type strain KY9611 was isolated following
the method described by Sambrook et al. (23), with the
concentration of lysozyme modified to 2.5 µg ml
1
(32). Chromosomal DNA was digested with the restriction
enzyme EcoRI and then ligated with EcoRI-digested
shuttle vector pC2, which is composed of E. coli vector
pHSG298 and B. lactofermentum cryptic plasmid pBL1
(8). The ligated mixture was directly introduced into KY9714
mutant cells by electroporation, and transformants were selected on L
plates containing 5 µg of kanamycin ml
1 at the
restrictive temperature 37°C.
DNA sequencing. DNA sequencing was carried out by the methods of Sanger et al. (24) using the Thermo Sequenase fluorescent-labeled primer-cycle sequencing kit with 7-deaza-dGTP (Amersham Pharmacia Biotech UK Ltd.) with an automated DNA sequencer, DSQ-1000L (Shimadzu Co., Kyoto, Japan).
Construction of ltsA (C2A) mutant gene. The mutant ltsA gene in which the N-terminal second cysteine residue was replaced by alanine residue, named ltsA (C2A), was amplified by PCR using primers 5'-TTTGAATTCAGGAGGATTTTTCATTCATGGCAGGC-3' and 5'-CTCCTTCAACTAAAGAGGATCCGTT-3'. The PCR products were cloned into the EcoRI and BamHI sites of shuttle vector pC2. Since these PCR products do not include their own promoter sequence, the ltsA (C2A) mutant gene was expressed from the E. coli lac promoter on shuttle vector pC2. The resulting plasmid was named pLtsA-C2A. Plasmid pLtsA carrying the wild-type gene of the same construct was prepared similarly using primers 5'-TTTGAATTCAGGAGGATTTTTCATT-3' and 5'-CTCCTTCAACTAAAGAGGATCCGTT-3'.
PCR was carried out using the LA PCR kit, version 2.1 (TaKaRa Shuzo Co., Ltd.) and a programmable thermal cycler, PTC-100 (MJ Research, Watertown, Mass.).In vitro protein synthesis.
For in vitro protein synthesis,
the isolated fragments were recloned on E. coli vector
plasmid pMW119. In vitro protein synthesis using the system of De Vries
and Zubay (5) was performed with the E. coli S30
extract system for circular DNA (Promega Co., Madison, Wis.) and
L-[4,5-3H]leucine (2.22 to 4.44 TBq
mmol
1; Moravek Biochemicals, Inc., Brea, Calif.).
Determination of a mutation point of the ltsA gene in KY9714. A fragment of about 0.8 kb encompassing SacI and AgeI sites in the ltsA gene was amplified from the chromosomal DNA of KY9611 (wild-type) or KY9714 (mutant) by PCR using primers 5'-TGAACCCGACCGCATGCCAATGACT-3' and 5'-TCCAAGGTCGACATGATCTTAGGAA-3'. PCR products were cloned into SphI-SalI sites of pHSG398. Three clones independently isolated were sequenced for both wild-type and mutant genes.
Construction of an ltsA disruptant.
A
PstI-SalI fragment of about 1.2 kb, in which both
the N-terminal and C-terminal portions of the ltsA gene were
truncated, was cloned into the PstI-SalI sites of
the E. coli vector plasmid pHSG298. The constructed plasmid,
pSLP2, was introduced into the C. glutamicum wild-type
strain KY9611 by electroporation, and kanamycin-resistant colonies were
selected at 30°C on L plates containing 10 µg of kanamycin
ml
1. In kanamycin-resistant colonies, pSLP2 should be
integrated into the host chromosome by homologous recombination at the
ltsA locus because pSLP2 cannot replicate in C. glutamicum. The chromosomal disruption of the ltsA gene
was checked by PCR using primer 5'-TGAACCCGACCGCATGCCAATGACT-3', which anneals to the ltsA gene sequence, and primer
5'-CAGGAAACAGCTATGAC-3', which anneals to the pHSG298
sequence (data not shown).
Measurement of L-glutamate production and glucose consumption. Overnight cultures of KY9761, KY9714, or the ltsA disruptant were inoculated in BS medium and cells were grown at 30°C to an OD660 of about 0.4. Then cultures were shifted to 30, 35, or 37°C and incubated for 24 h. After cells were removed by centrifugation, concentrations of L-glutamate and glucose in the medium were measured with a Biotech-Analyzer AS-210 (Sakura Seiki, Tokyo, Japan) using glutamate oxidase sensor or glucose oxidase sensor. In the case of penicillin induction, 1 µM penicillin G was added to the culture of KY9611 at an OD660 of about 0.4 and cells were cultured at 30°C for 24 h.
Nucleotide sequence accession number. The nucleotide sequence data reported in this paper will appear in the DDBJ/EMBL/GenBank nucleotide sequence databases with accession number AB029550.
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RESULTS |
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Physiological characterization of the C. glutamicum
lysozyme-sensitive mutant KY9714.
We determined growth
patterns of the C. glutamicum KY9714 mutant strain, which
was originally isolated as a lysozyme-sensitive mutant following
N-methyl-N'-nitro-N-nitrosoguanidine
mutagenesis (13). It is known that coryneform bacteria, such
as C. glutamicum, are highly resistant to lysozyme. Growth
of a wild-type strain of C. glutamicum, KY9611, was not
affected by treatment with 12.5 µg of lysozyme ml
1.
Growth was inhibited by treatment with 400 µg of lysozyme
ml
1 but the turbidity of the culture did not decrease,
indicating that cells so treated did not lyse (Fig.
1A). This was confirmed by microscopic
observation. On the other hand, growth of the mutant strain KY9714 was
inhibited by treatment with 12.5 µg of lysozyme ml
1.
The turbidity of the culture decreased soon after the addition of
lysozyme, indicating that cells were lysing (Fig. 1B).
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Cloning of a gene involved in the lysozyme and temperature
sensitivity of the C. glutamicum KY9714 mutant.
We
shotgun cloned a gene involved in the lysozyme and temperature
sensitivity of a KY9714 mutant. An EcoRI library of
wild-type C. glutamicum chromosome DNA in the E. coli-C. glutamicum shuttle vector pC2 (8)
was introduced directly into KY9714, and temperature-resistant clones
were selected at 37°C as described in Materials and Methods. Two
clones, pHLS2 and pHLS4, which carried the same EcoRI
fragment of about 4 kb in different orientations, were isolated. These plasmids could complement not only the temperature sensitivity but also
the lysozyme sensitivity of the KY9714 mutant (Fig.
4).
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Nucleotide sequencing analysis and homology search. The nucleotide sequence of the cloned EcoRI fragment was determined by the dideoxy method (24). The EcoRI fragment contained two open reading frames (ORFs). The longer one (1,920 bp), which contained both SacI and KpnI sites, encodes a protein of 640 amino acid residues with a predicted molecular mass of 72,443 Da, and the shorter one (342 bp) encodes a protein of 114 amino acids with a molecular mass of 12,094 Da and is downstream of the longer ORF in the opposite direction. Judging from the results of complementation tests, we concluded that the longer ORF is the gene that complemented the phenotypes of the KY9714 mutant, and we designated it ltsA. This was confirmed by a complementation test with pLtsA carrying only the ltsA gene and by determination of the mutation point as mentioned below.
The deduced amino acid sequence of the ltsA gene product shows significant similarity to the glutamine-dependent asparagine synthetases of various organisms, such as E. coli (accession number J05554), humans (M27396), the yeast Saccharomyces cerevisiae (Z48675), and the pea Pisum sativum (X52179). However, the ltsA gene was unable to complement asparagine auxotrophy of the E. coli asnA asnB double mutant strain ER (data not shown). Glutamine-dependent asparagine synthetase belongs to purF-type glutamine-dependent amidotransferase (25, 29). Its N-terminal second cysteine residue is absolutely required for enzyme activity in the amidotransfer reaction (1, 11, 34). To confirm that the ltsA gene product is a member of the purF-type amidotransferase family, we replaced the N-terminal second cysteine residue of the LtsA protein by alanine residue, as described in Materials and Methods. The mutant ltsA gene, named ltsA (C2A), could not complement the temperature-sensitive growth and the lysozyme sensitivity of the KY9714 mutant, although recombinants with wild-type phenotypes were generated at low frequency, as in the case of pHLS4K and pHLS2S (Fig. 4). These results strongly suggest that the ltsA gene does not encode an asparagine synthetase but encodes another glutamine-dependent amidotransferase activity which is probably responsible for the synthesis of cell wall components of C. glutamicum. The gene product of the shorter ORF shows homology with the hypothetical proteins Rv2204c of Mycobacterium tuberculosis (4), YadR of E. coli (7), and HI1723 of Haemophilus influenzae (6), etc., but the functions of these gene products have not been determined. We examined the gene products of the cloned EcoRI fragment and its deletion derivatives by in vitro protein synthesis using an E. coli S30 extract system (5). The results indicate that the 61-kDa protein corresponds to the product of ltsA gene, although the measured molecular mass of this protein is a little lower than that calculated from the nucleotide sequence (72,443 Da). The 15-kDa product corresponds to that of the shorter ORF, but the molecular mass was a little higher than that calculated from the nucleotide sequence (12,094 Da) (data not shown).Identification of mutation of ltsA gene in KY9714
mutant and ltsA gene disruption.
Judging from the
results of recombinational complementation of the KY9714 mutant by
using several deletion derivatives of pHLS2 and pHLS4, strain KY9714
has a mutation(s) in the 0.8-kb SacI-AgeI
fragment encoding the N-terminal portion of the LtsA protein (data not
shown). We amplified by PCR the corresponding DNA region and sequenced
it as described in Materials and Methods. Surprisingly, the codon TGG
of Trp132 was changed to a stop codon (TAG), that is, an amber
mutation. This means that the KY9714 mutant produces only the
N-terminal 1/5 portion of the LtsA protein. This G:C
A:T transition
is as expected from the mutation spectrum caused by
N-methyl-N'-nitro-N-nitrosoguanidine.
Glutamic acid production by ltsA mutant and
disruptant.
It is well known that L-glutamate
production by C. glutamicum is induced by treatment with
penicillin, an inhibitor of cell wall peptidoglycan synthesis. However,
its mechanism has not been clarified. To examine whether the
ltsA gene is involved in L-glutamate production
by this organism, we studied L-glutamate production by the
KY9714 mutant and the ltsA disruptant at various
temperatures (Fig. 5). Both the KY9714
mutant and the disruptant began to produce L-glutamate when
the growth temperature was raised. The ltsA disruptant produced an especially large amount of L-glutamate at
37°C (Fig. 5C), almost comparable to that produced by the wild-type
strain treated with penicillin (Fig. 5A). In the case of the KY9714
mutant, L-glutamate production was higher at 35 than at
37°C (Fig. 5B). The differences in the effect of temperature on
L-glutamate production between the KY9714 mutant and the
disruptant are probably due to the extent of leakiness of the
phenotypes. Since growth yields as well as glucose consumptions of
KY9714 at higher temperatures were much lower than those of the
wild-type and the disruptant (Fig. 5), a severe defect of the
ltsA gene function may inhibit not only cell growth but also
intracellular metabolism due to a loss of cell integrity.
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DISCUSSION |
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C. glutamicum was originally isolated as an L-glutamic acid producer (16, 30). However, C. glutamicum does not excrete L-glutamic acid under normal growth conditions. Treatment with penicillin or surfactants, which decreases cell surface integrity and often causes cell lysis in bacteria, induces production of L-glutamic acid in this microorganism (22, 28). It is also known that C. glutamicum is highly resistant to treatment with lysozyme. We assume that this nonlytic phenotype is closely related to the mechanism of L-glutamic acid production by C. glutamicum. To study the relationship between cell wall structure and L-glutamic acid production, we analyzed C. glutamicum mutant strain KY9714, which was originally isolated as a lysozyme-sensitive mutant. We isolated a novel gene, ltsA, which encodes a purF-type glutamine-dependent amidotransferase and complements the lysozyme sensitivity and temperature sensitivity of KY9714.
The ltsA gene product shows significant sequence similarity
to glutamine-dependent asparagine synthetases of various organisms that
catalyze the transfer of the
amino residue of glutamine to
the carboxyl residue of aspartate (19).
Glutamine-dependent asparagine synthetase belongs to the
purF-type amidotransferase (25, 29). The
purF-type amidotransferases have 12 conserved amino acid
residues in the glutamine amide transfer domain of about 200 amino acid
residues (2). These 12 amino acid residues are also found in
LtsA protein. The N-terminal cysteine residue is absolutely required
for enzyme activity of the amidotransfer reaction (1, 11,
34). Replacement of this cysteine residue by alanine results in
loss of complementation ability, indicating that the LtsA is indeed a
purF-type amidotransferase. However, the C. glutamicum
ltsA gene does not complement asparagine auxotrophy of the
E. coli mutant strain ER (asnA asnB double
mutant). Since it was reported that even the human gene encoding
glutamine-dependent asparagine synthetase could complement asparagine
auxotrophy of E. coli mutant JE6279, a derivative of the ER
strain (10), it is very likely that the LtsA protein is not
an asparagine synthetase. Genome projects revealed that M. tuberculosis and Bacillus subtilis have the putative
asnB genes (4, 17). However, these putative gene
products show greater similarity to the LtsA than to asparagine synthetases such as E. coli AsnB (data not shown).
Therefore, it is likely that these putative genes encode proteins with
functions similar to those of the C. glutamicum ltsA gene
product and not to asparagine synthetase activity.
The facts that the C. glutamicum KY9714 mutant has an amber mutation in the ltsA gene and that an ltsA disruptant could be constructed indicated that the ltsA gene is not essential for growth at 30°C. It seems that the ltsA gene product is required for formation or maintenance of the rigid cell wall structure of C. glutamicum. Swollen cell morphology of the mutant at the restrictive temperature and the suppression of temperature sensitivity and lysozyme sensitivity by 20% sucrose also support this notion. The ltsA gene product may catalyze the amido-transfer reaction from glutamine onto some unknown cell surface component(s), which is now under investigation.
The ltsA disruptant produced a significant amount of L-glutamate at high temperature, nearly comparable to that obtained by penicillin treatment. Cell morphology and suppression of the mutant phenotypes by 20% sucrose strongly suggest that the ltsA gene is involved in cell wall formation in C. glutamicum. A defect of the ltsA gene function resulted in L-glutamate production, leading us to expect that further investigation of this gene may give us a clue to the relationship between cell wall synthesis and L-glutamate production. Strains used for industrial production of glutamic acid have been constructed by classical genetic methods, that is, repeated mutagenesis and selection of improved strains. Mutations of these strains that contribute to glutamate production have not been elucidated to date. Analysis of the ltsA locus in these strains would be of interest. It is also possible that introduction of ltsA mutations into the industrial strains would improve their glutamate production.
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ACKNOWLEDGMENTS |
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We thank M. Schaechter for critical reading of the manuscript and Kyowa Hakko Kogyo Co., Ltd. for providing C. glutamicum strains.
This work was partly supported by a Grant-in-Aid for Scientific Research on Priority Areas (08277104) and a Grant-in-Aid for Scientific Research (A) (11356003) from the Ministry of Education, Science, Sports, and Culture of Japan and a research grant from the Japan Bioindustry Association.
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FOOTNOTES |
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* Corresponding author. Mailing address: Department of Bioengineering, Tokyo Institute of Technology, 4259 Nagatsuta, Midori-ku, Yokohama 226-8501, Japan. Phone: 81-45-924-5770. Fax: 81-45-924-5820. E-mail: mwachi{at}bio.titech.ac.jp.
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