Journal of Bacteriology, July 2000, p. 4051-4058, Vol. 182, No. 14
0021-9193/00/$04.00+0
Copyright © 2000, American Society for Microbiology. All rights reserved.
Laboratoire d'Ingéniérie des Systèmes Macromoléculaires, UPR9027,1 and Laboratoire d'Architecture et Fonction des Macromolécules Biologiques, UPR9039,3 IBSM/CNRS, 13402 Marseille Cedex 20, and UMR 5539 CNRS, Département Biologie-Santé, Case 107, Université Montpellier II, 34905 Montpellier Cedex 05,2 France
Received 9 February 2000/Accepted 21 April 2000
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ABSTRACT |
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Pseudomonas aeruginosa is a gram-negative bacterium
that secretes many proteins into the extracellular medium via the Xcp machinery. This pathway, conserved in gram-negative bacteria, is called
the type II pathway. The exoproteins contain information in their amino
acid sequence to allow targeting to their secretion machinery. This
information may be present within a conformational motif. The nature of
this signal has been examined for P. aeruginosa exotoxin A
(PE). Previous studies failed to identify a common minimal motif
required for Xcp-dependent recognition and secretion of PE. One
study identified a motif at the N terminus of the protein, whereas
another one found additional information at the C terminus. In this
study, we assess the role of the central PE domain II composed of six
-helices (A to F). The secretion behavior of PE derivatives,
individually deleted for each helix, was analyzed. Helix E deletion has
a drastic effect on secretion of PE, which accumulates within the
periplasm. The conformational rearrangement induced in this variant is
predicted from the three-dimensional PE structure, and the molecular
modification is confirmed by gel filtration experiments. Helix E is in
the core of the molecule and creates close contact with other domains
(I and III). Deletion of the surface-exposed helix F has no effect on
secretion, indicating that no secretion information is contained in
this helix. Finally, we concluded that disruption of a structured
domain II yields an extended form of the molecule and prevents
formation of the conformational secretion motif.
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INTRODUCTION |
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Pseudomonas aeruginosa is a gram-negative bacterium and opportunistic human pathogen that produces several extracellular proteins that contribute to its virulence (10). Those exoproteins are involved in alteration of the host tissues and in the disorganization of cellular functions. The secreted proteins include degradative enzymes such as elastase and toxins such as exotoxin A (PE), an ADP-ribosyltransferase (45). The secretion into the extracellular medium of the majority of these virulence factors, including elastase and PE, requires the so-called general secretory pathway (32). This pathway is widely conserved in gram-negative bacteria, i.e., Klebsiella oxytoca (Pul) (33), Erwinia species (Out) (24, 36), Vibrio cholerae (Eps) (39), Aeromonas species (Exe) (19, 21), Xanthomonas campestris (Xps) (5), Legionella pneumophila (Lsp) (14, 23), Escherichia coli (Gsp) (11), and Pseudomonas species (Xcp) (4, 9, 13). Briefly, the exoproteins using this pathway are synthesized as precursors with an N-terminal signal peptide which is cleaved off during translocation across the cytoplasmic membrane via the Sec machinery (6). The proteins are subsequently released into the periplasm, where they fold into what appears to be their final conformation. Several studies have demonstrated that disulfide bond formation and chaperone-assisted folding are crucial steps in the generation of a protein competent for the final step in the secretion process (2, 3, 7, 31). During this step, the folded mature proteins are translocated across the outer membrane via a specialized machinery called Xcp in P. aeruginosa, i.e., the main terminal branch of the general secretory pathway, or type II pathway (10). This machinery is composed of 12 xcp gene products (XcpP to XcpZ and XcpA) distributed within the bacterial cell envelope. The unravelling of protein-protein interactions within this macromolecular complex is one of the major issues addressed by researchers in the field.
In addition to the interactions required for the assembly and functioning of the machinery, the mechanism allowing specific recognition of secreted substrates as distinct from periplasmic resident proteins appears to be a key event. Indeed, translocation across the outer membrane is a highly specific process that requires targeting features for the unambiguous recognition of the secreted protein by the secretion machinery. The features permitting specific exoprotein recognition by the Xcp and "Xcp-like" machineries in other bacteria are poorly understood. In P. aeruginosa, exoproteins are structurally highly diverse (e.g., PE, elastase, and lipase) and do not contain obvious sequence similarities that might constitute a common secretion signal. The absence of obvious linear motifs among various substrates sorted by a common unique machinery and the ability of the Xcp machinery to transport folded polypeptides suggest the existence of a conformational motif, a specific structure found only within the mature, folded protein. Consequently, this secretion signal might be identified in proteins that have known three-dimensional structures.
P. aeruginosa mature PE is a 613-amino-acid protein with a
molecular size of 66,600 Da. The toxin enters eukaryotic cells by
receptor-mediated endocytosis and is then translocated into the cytosol
(22), where it catalyzes ADP-ribosylation of elongation factor 2, resulting in protein synthesis inhibition and cell death. The
three-dimensional structure of PE shows the existence of three distinct
domains (1), the functions of which have been elucidated (20). Domain I, which encompasses amino acids 1 to 252 (Ia) and 365 to 404 (Ib), is responsible for cell recognition; domain II
(residues 253 to 364) is involved in translocation of the toxin across
the membrane of intracellular compartments; and domain III (residues
405 to 613) forms the catalytic domain. Previous studies using hybrid
and truncated proteins have reported the existence of discrete
recognition signals in PE. Those signals map either to domain Ia or to
the 305 C-terminal residues of PE (15, 26, 28). More
particularly, domain I was shown to allow secretion of
-lactamase by
the Xcp system (26). Whether those signals constitute
independent recognition motifs or function synergetically remains to be
elucidated. In order to determine whether other regions of the protein
contain secretion information essential in the recognition process, we
have focused our investigations on central domain II. This domain of PE
is composed of six consecutive
-helices named A to F. We previously
deleted each of these helices independently (43). In this
study we analyzed the effect of these deletions on secretion by
P. aeruginosa and showed that features within domain II are
important for efficient recognition of PE by the Xcp secretion machinery.
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MATERIALS AND METHODS |
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Bacterial strains and culture conditions. Escherichia coli strain TG1, used for propagating recombinant plasmids, was grown at 37°C in L broth for isolation of plasmids. P. aeruginosa strain PAK-NT was used as the standard strain for assaying for protein secretion. PAK-NT is an exotoxin A (toxA) mutant obtained by insertion of a gentamicin resistance gene cassette (42). Recombinant broad-host-range plasmids were introduced into PAK-NT by triparental mating with pRK2013 as a helper plasmid (8). Protein secretion was assayed in plasmid-bearing PAK-NT strains grown at 30°C in L broth. Ampicillin (50 µg/ml for E. coli) and carbenicillin (300 µg/ml for P. aeruginosa) were used where appropriate.
Recombinant DNA techniques, plasmids, and subclones.
General
procedures for the isolation, analysis, and manipulation of DNA were as
described by Sambrook et al. (38). Plasmids encoding PE,
PE-2T, and PE lacking helix A, B, C, D, E, or F from PE domain II have
been previously described (43) and are schematically represented in Fig. 1.
XbaI-EcoRI inserts carrying the genes encoding those PE derivatives were subcloned into the broad-host-range plasmid
pMMB67HE (12) digested with XbaI and
EcoRI, yielding pMRV1PE (PE wild type), pMRV2T (PE-2T),
pMRV1A (PE-delA), pMRV1B (PE-delB), pMRV1C (PE-delC), pMRV1D (PE-delD),
pMRV1E (PE-delE), and pMRV1F (PE-delF). PE-46 has a deletion of
residues 48 to 226 within domain I and was recloned into pMMB67HE,
yielding pMRV46.
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Subcellular fractionation of PE and its derivatives. PAK-NT carrying recombinant plasmids was grown to an optical density at 600 nm (OD600) of 3 to 4 (stationary phase). An equivalent of 3 OD600 units of culture was separated into cell and supernatant by centrifugation. The proteins were precipitated from the supernatants with 15% trichloroacetic acid (TCA) for 30 min at 4°C, resuspended in sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) sample buffer and heated for 7 min at 95°C. Cell pellets were directly resuspended in SDS-PAGE sample buffer and heated. The periplasmic fraction was prepared as described previously (18). Cell pellets were first washed in 50 mM Tris-HCl (pH 7.4), resuspended in 50 mM Tris-HCl (pH 7.4)-200 mM CaCl2 and gently shaken for 30 min at 30°C. Samples were then incubated for 5 min on ice and then for 15 min at room temperature. These incubation steps were repeated once, and finally the cells were pelleted by centrifugation. The supernatants, corresponding to the periplasmic fluid, were precipitated with 15% TCA. Cell pellets and TCA-precipitated supernatants were then resuspended and heated in SDS-PAGE sample buffer as above.
SDS-PAGE and immunoblotting.
Samples were solubilized in
SDS-PAGE sample buffer and separated using 11% polyacrylamide gels
containing SDS. Proteins were then blotted onto nitrocellulose
membranes which were developed using goat or rabbit antiserum directed
against PE, followed by a peroxidase-conjugated rabbit anti-goat or
goat anti-rabbit immunoglobulin G detected by chemiluminescence (kit
from Pierce). To quantify nonspecific leakage, periplasmic
-lactamase was also probed using specific antibodies. Quantitative
estimation of the relative amounts of PE detected was carried out using
the Image Quant program (Molecular Dynamics) after scanning the
chemiluminescence films.
Gel filtration. PE and derivatives were purified as described previously (43). Purified toxins (at ~0.5 mg/ml) were applied (200-µl sample volume) to a Superdex 200 column (HR10/30; Pharmacia). The column was calibrated using yeast alcohol dehydrogenase (150 kDa), human transferrin (80 kDa), bovine serum albumin (66 kDa), and bovine carbonic anhydrase (29 kDa). Proteins were eluted in 750-µl fractions using phosphate-buffered saline at 250 µl/min and monitored at 280 nm.
Graphic computer analysis of PE three-dimensional structure.
The atomic coordinates were kindly provided by David McKay, since the
Protein Data Bank entry only contains the C
positions of domain III.
The graphic inspection and analysis were performed using Turbo-Frodo
(37).
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RESULTS |
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Influence of domain II deletions on PE secretion.
Six PE
variants, each lacking one of the helices from PE domain II, were
constructed previously (43) (Fig. 1). The genes encoding
these truncated forms of PE were cloned in the broad-host-range plasmid
pMMB67HE under control of the tac promoter and introduced into a P. aeruginosa strain, PAK-NT. This strain is an
exotoxin A (toxA) mutant obtained by insertion of a
gentamicin resistance gene cassette (42). PAK-NT cells
carrying each of the truncated PEs were grown to an OD600
of 3 to 4. No addition of isopropyl-
-D-thiogalactoside (IPTG) was required to obtain sufficient expression of PE and its
derivatives in P. aeruginosa. After immunoblotting using an antibody directed against PE, the secretion level of the truncated PE
forms could be evaluated by comparing signals obtained with cell
extracts and precipitated culture supernatants (e.g., Fig. 2A). The only truncated PE form that was
efficiently secreted was the variant lacking helix F (PE-delF).
Inspection of data from three independent experiments indicated that
the truncated PEs fall into distinct categories with respect to their
average secretion level (Fig. 2B). PE-delF is secreted almost as
efficiently as wild-type PE, indicating that this helix has a marginal
role, if any, in the secretion of PE. The PE with a deletion of helix C
(PE-delC) exhibited a greatly reduced level of secretion (10 to 20%)
but was still clearly detectable at levels higher than could be
explained by nonspecific leakage in the supernatant fraction (Fig. 2A).
The PE forms with deletions of helices A, B, and D (PE-delA, PE-delB,
and PE-delD, respectively) were extremely poorly secreted (<5%), but
this amount is significant since no quantifiable amount of the normally
periplasmically located
-lactamase was ever detected in the
supernatant fraction (data not shown). Finally, deletion of helix E
(PE-delE) had the most drastic effect on secretion, since no PE-delE
was ever detected in the supernatant fraction in any of the experiments
performed.
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Nonsecreted PE forms are periplasmically located.
We next
examined whether the lack of secretion was due to inefficient outer
membrane translocation of the PE forms via the Xcp machinery or to a
block in the first step of translocation across the inner membrane via
the Sec machinery. Cells of PAK-NT containing the different PE
derivatives were grown as previously described, and periplasmic
extracts were prepared (see Materials and Methods). Samples were loaded
on SDS-PAGE gels followed by immunoblotting with antibodies directed
against PE. The results obtained indicated that in all cases, the
nonsecreted PE forms were mostly located in the periplasmic fraction
(Fig. 3 and data not shown). It should be
noted that the amount of proteins detected in the cytoplasmic fraction
is due to inefficient release of the periplasmic fraction, as seen for
-lactamase (data not shown). The limiting step in the secretion
process thus appeared to be the Xcp-dependent outer membrane
translocation. This observation confirmed the previously reported data
which showed that the PE derivatives were periplasmic when produced by
E. coli (43). However, the truncated forms of PE
seemed to be more sensitive to proteolytic degradation than the
wild-type PE form (Fig. 3), which suggests a difference in folding
state and structure (see the Discussion section). Interestingly,
full-length PE-delE was clearly detectable in the periplasm but was not
found in the supernatant fraction, indicating that lack of secretion is
not due to proteolytic degradation in the periplasm. Indeed, in the
case of PE-delC, the intact protein was recovered from the supernatant
in spite of the proteolytic degradation (Fig. 3).
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Permissivity of insertion at helix F.
We have shown that
deletion of helix F did not affect secretion of PE. This observation
suggests that no secretion information is contained within this helix
and that this deletion does not disturb the protein's conformation and
subsequently its recognition by the Xcp machinery. The position
occupied by helix F might be a permissive site for the insertion of
protein domains without disturbing the efficient secretion of the
hybrid proteins by the Xcp machinery. We examined the secretion of a
previously engineered PE protein (43) in which a large part
of PE domain II has been duplicated by the insertion of the B, C, D,
and E helices at the position of the F helix (PE-2T) (Fig. 1). The gene
was recloned in the broad-host-range vector pMMB67HE and introduced
into PAK-NT, and secretion was analyzed by immunoblotting as above. The
results (Fig. 4) revealed that PE-2T,
which as expected was larger than wild-type PE, was efficiently
secreted into the extracellular medium even though weakly produced,
indicating that the increased molecular size of the PE derivative PE-2T
(75.6 kDa instead of 66.6 kDa) does not affect secretion.
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Influence of domain II deletions on PE molecular size.
It was
previously reported that some of the truncated PE forms migrated more
slowly than PE on nonreducing gels (43), indicating a
slightly less compact tertiary structure. This was particularly marked
in the case of PE-delE, which is totally secretion defective. We
decided to investigate further the potential relationship between compaction and secretion by analyzing the different variants using gel
filtration on a Superdex 200 column (Fig.
5). The results obtained showed that
PE-delE is the most affected variant form, since it eluted in fraction
14, whereas PE eluted with fraction 20 (Fig. 5C). The shift in position
of the PE-delE elution peak seems to be due to relaxation of the
molecule rather than to the formation of dimers, since this peak is
very sharp, reflecting a homogenous population of molecules. Moreover,
dimers were not observed on nonreducing SDS-PAGE (43).
PE-delF coeluted with PE in fraction 20 (Fig. 5D), indicating that no
major structural changes have occurred in the molecule and in line with
the fact that this variant form conserved all PE biological activities, including the ability to be secreted by the bacterium. PE-delC and
PE-delD, which were both secreted at significant levels, had a high
elution peak in fraction 20 as well (Fig. 5B). In contrast, PE-delA and
PE-delB had more clearly retarded elution peaks (Fig. 5A), which may
indicate why they are poorly, or not, secreted.
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DISCUSSION |
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The type II secretory pathway is widely conserved in gram-negative
bacteria. Yet species specificity appears to be highly stringent, since
heterologous secretion hardly ever occurred, at least efficiently. One
striking example concerns the very similar Cel5 (formerly EGZ)
(41) and CelV cellulases, which cannot be heterologously
secreted by the very closely related producer strains, Erwinia
chrysanthemi and Erwinia carotovora, respectively
(34). There is thus little doubt that specific targeting
signals must be present within the sequence of the substrates secreted
by the type II machinery and that this signal is only efficiently
recognized by the secretion machinery of the organism that produces
this substrate. Though several attempts have been made to define these targeting signals in different systems, no common features have emerged. The use of gene fusions with
-lactamase or alkaline phosphatase allowed the identification of specific regions implicated in the secretion process. The results obtained with Klebsiella oxytoca pullulanase hybrids identified two distal regions within the primary sequence, between residues 1 and 78 and 735 and 814, which
are both necessary to promote secretion of
-lactamase across the
outer membrane (40). In the case of P. aeruginosa
PE, residues 60 to 120 appeared to be sufficient for directing
-lactamase secretion (26). However, in the case of
E. carotovora polygalacturonase (PehA), no more than the
last two amino acids of the PehA could be excluded from a PehA-Bla
hybrid without blocking secretion (29, 30). Passenger
proteins might contain structures incompatible with efficient secretion
by the type II machineries.
Other approaches using simple deletions have also been carried out. In this way, it could be shown that deletions of either of the two previously identified pullulanase secretion motifs reduces but does not abolish secretion (40). In addition, a truncated form of PE containing the N-terminal 30 residues connected to the C-terminal 370 residues, thus lacking the previously mentioned residues 60 to 120, is also secreted (28). These results indicate that more than a single region within the primary sequence might function as a targeting motif. Whether these regions function independently or synergetically remains to be elucidated. Studies done with cellulase Cel5 from E. chrysanthemi previously established that secretability is probably not controlled by a single discrete region but requires information present on the whole length of the protein. Indeed, in this case it appears that information for outer membrane translocation is present in both the catalytic and cellulose-binding domains (35).
Failure to identify discrete elements within the primary sequence of type II-transported substrates led to the hypothesis that the targeting signal might be a conformational motif. This speculation is also strongly supported by the fact that type II-secreted proteins acquire a high level of folding within the periplasm, even before they are translocated across the outer membrane. In particular, it has been shown that disulfide bond formation is a prerequisite for secretion of E. chrysanthemi Cel5 and K. oxytoca pullulanase (2, 31), and aerolysin and cholera toxin oligomerize within the periplasm prior to secretion by the type II machinery (16, 17). The conformational motif could be located in one area of the folded molecule, such an area being generated by residues coming from diverse regions of the primary sequence. This hypothesis may fit with the identification of the two distal motifs within the K. oxytoca pullulanase (40). Alternatively, the motif could be a defined region of the primary sequence but highly dependent on the folding of the molecule for its proper exposition to the secretion machinery.
PE from P. aeruginosa is a single-chain cytotoxin, arranged
into three major structural domains (1) (Fig.
6A). It belongs to the
group of exoproteins secreted by the type II secretion machinery (Xcp)
(10), and it was shown that a periplasmic intermediate is
part of the normal route for its extracellular secretion
(27). We examined the role of domain II, which previous
studies indicated did not contain information needed for secretion.
Domain II is composed of six
-helices (A to F) that form the
translocation domain. We showed that deletion of any of these helices
except F reduces or abolishes secretion of PE. Importantly, we thus
first concluded that no secretion information was contained within
helix F.
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In order to seek an explanation for the observed differences in
secretion level between the truncated PE forms, the three-dimensional structure of PE (1) was inspected by graphic means. We have shown that PE-delE is totally incompetent for secretion to the extracellular medium. The structural evidence that the mutational deletion of helix E in domain II must lead to dramatic changes in the
structure of the protein is illustrated in Fig. 6A and B. Besides the
fact that helix E spans the entire domain II (21 residues), it forms
tight links to the neighboring domains Ib and III (Fig. 6A). Residues
E334 and R337, at the N-terminal end of helix E, are hydrogen bonded to
Q485 of domain III (Fig. 6B). A double-bridged salt link is formed by
E348, at the C-terminal end of helix E, and R467 in domain III (Fig.
6B). Residues E346 and R349 form hydrogen bonds with the main chain N
(L390) and CO (A388) groups of residues, respectively, situated in the
-strand of domain Ib (Fig. 6B). Helix E is also implicated in
numerous hydrophobic contacts, not only with the surrounding helices of the same domain but also with hydrophobic residues in domains Ib and
domain III. The breakdown of all of these stabilizing contacts and
links most probably leads to incorrect folding of domain II and could
also disturb proper domain organization, with domain I and III possibly
falling apart. Helix F, the deletion of which did not interfere with
the secretion properties of the protein, is a very short helix (9.2 Å)
of two complete helical turns. The helix is located at the tip of a
surface loop, is highly surface exposed, and does not make any major
hydrogen bonds with neighboring helices (Fig. 6A). Presumably, the
distance of 9.2 Å, corresponding to the length of helix F, can easily
be bridged by the surrounding residues that are not involved in
secondary structures without perturbing the overall fold. PE-delC is
another form of PE whose secretion is drastically reduced. Helix C is
of an intermediate length (14.8 Å) and exposed at the surface of the
folded PE (Fig. 6A). Within domain II, it is a rather isolated helix
with few close contacts and no particular hydrogen bonds to the
surrounding helices. The residues preceding (301 to 309) and residues
following (318 to 323) helix C (310 to 317) are unstructured loop
regions, and therefore, one can imagine that, with small conformational rearrangements, these stretches could replace helix C without drastically influencing the overall fold of domain II. The presence of
three glycine residues in the loop between helices C and D supports
this hypothesis.
The predicted changes in the structure of domain II caused by all
deletions except that of PE-delF are confirmed by the previous observation that none of the truncated PE forms has a functional domain
II; i.e., none of these variants was transported into the cytosol after
internalization by eukaryotic cells (43). Interestingly, it
was also previously shown that none of these deletions within PE domain
II interfered with cell binding or internalization or enzymatic
activity, indicating that domains I and III are correctly folded
(43). Thus, if there is a secretion signal in domain I or
III and it is sufficient for secretion, the truncated proteins studied
here should be efficiently secreted. This was not the case, however,
even though they were correctly exported to the periplasm. The lack of
translocation across the outer membrane might be due either to the
absence of a secretion motif, contained in domain II and essential for
recognition by the Xcp machinery, or to a default in the presentation
of a secretion signal(s) contained in other domains because of the
incorrect folding of the molecule. Since domain I alone may trigger
-lactamase secretion in an Xcp-dependent fashion (26),
the first alternative appears unlikely. Moreover, when we analyzed the
fate of a protein from which most of domain Ia has been deleted
(residues 48 to 226), all of the molecules were retained within the
cell (Fig. 4). This confirms that information critical for secretion is
contained in this particular domain. The hypothesis that altering
domain II may alter the overall conformation of the molecule and
exposure of the secretion signal is restricted by the observation that
the structures of domains I and III are not altered in these variants
truncated within domain II. Consequently we postulated that the lack of
secretion in this case is due to a separation of the two folded domains
and a change in the molecular dimension due to the formation of a hinge
by the destructured domain II. The fact that truncated PE proteins such
as PE-delE and PE-delC displayed increased susceptibility to
periplasmic proteases favors this hypothesis. Moreover, gel
filtration experiments showed that indeed the Stockes radius of these
molecules is increased. This is obvious for PE-delE, which eluted in a
totally different fraction from wild-type PE (Fig. 5C). Interestingly,
PE-delE is the most affected of the domain II helix deletion mutants
with respect to translocation across the outer membrane. On the other hand, PE-delF, which is the only variant whose secretion is unaffected, has an elution profile identical to that of PE (Fig. 5D). The weakly
secreted PE-delC and PE-delD also have a high peak of elution in the
fraction corresponding to PE (Fig. 5B), in contrast to the nonsecreted
PE-delA and PE-delB forms (Fig. 5A). Thus, the gel filtration data
correlate well with the secretion behavior.
Several lines of evidence presented here suggest that PE domain II is important for secretion of the molecule. Alterations within this domain, although not affecting the folding and function of the other domains of the molecule, yield nonsecretory PE derivatives. However, we suggest that this domain does not contain the targeting signal per se but might be important for the proper positioning of the signal within the molecule and subsequently for its presentation to the secretion machinery. The role of a properly folded domain II might be to keep in close contact domains I and III, both of which have been proposed to contain targeting informations. Thus, modifications in domain II do not influence the structure of the adjacent domains but might disturb the level of compaction of these domains in the overall molecule in which they might be loosely packed, as suggested above for PE-delE. This hypothesis is supported by the analysis of the three-dimensional structure of PE and the structural description of PE-delE and is in line with recently reported data on E. chrysanthemi PelC exoprotein (25). In this study, the authors suggest that an exposed region at the C terminus of the protein contains the targeting information but proper positioning of this signal is dependent on two other regions present within the core of the molecule. The fact that even minor sequence changes, as described for the channel-forming toxin aerolysin (44), can alter presentation of the secretion signal makes our task of identifying the common features of the secretory information among type II-dependent secreted proteins very difficult. One approach which may give fruitful information will be to systematically and randomly mutagenize structural genes for model proteins such as PE, for which the three-dimensional structure is available, in order to identify those critical regions of the molecule. We are currently addressing this issue using P. aeruginosa PE as a model system.
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ACKNOWLEDGMENTS |
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We thank Steve Lory for providing PAK-NT. We are indebted to David McKay for PE atomic coordinates. We thank all members of Andrée Lazdunski's laboratory for helpful discussion and Laurent Roux for his interest in this work. We are grateful to Claude Lazdunski, Tony Pugsley, and Frederic Barras for critical reading of the manuscript.
Romé Voulhoux is supported by the Ministry of Research and Technology and the Fondation pour le Recherche Médicale (FRM). This work was partly supported by the French Cystic Fibrosis Foundation (AFLM), by Biotech Framework grant BIO4-CT960119 from the European Union as part of the Cell Factories Network to A.F., and by a grant from the Association pour la recherche contre le cancer to B.B.
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FOOTNOTES |
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* Corresponding author. Mailing address: Laboratoire d'Ingéniérie des Systèmes Macromoléculaires, UPR9027, IBSM/CNRS, 31 Chemin Joseph Aiguier, 13402 Marseille Cedex 20, France. Phone: (33) (0)491164127. Fax: (33) (0)491712124. E-mail: filloux{at}ibsm.cnrs-mrs.fr.
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REFERENCES |
|---|
|
|
|---|
| 1. |
Allured, V. S.,
R. J. Collier,
S. F. Carroll, and D. B. McKay.
1986.
Structure of exotoxin A of Pseudomonas aeruginosa at 3.0-Angstrom resolution.
Proc. Natl. Acad. Sci. USA
83:1320-1324 |
| 2. | Bortoli-German, I., E. Brun, B. Py, M. Chippaux, and F. Barras. 1994. Periplasmic disulphide bond formation is essential for cellulase secretion by the plant pathogen Erwinia chrysanthemi. Mol. Microbiol. 11:545-553[Medline]. |
| 3. | Braun, P., J. Tommassen, and A. Filloux. 1996. Role of the propeptide in folding and secretion of elastase of Pseudomonas aeruginosa. Mol. Microbiol. 19:297-306[CrossRef][Medline]. |
| 4. | de Groot, A., G. Gerritse, J. Tommassen, A. Lazdunski, and A. Filloux. 1999. Molecular organization of the xcp gene cluster in Pseudomonas putida: absence of an xcpX (gspK) homologue. Gene 226:35-40[CrossRef][Medline]. |
| 5. | Dums, F., J. M. Dow, and M. J. Daniels. 1991. Structural characterization of protein secretion genes of the bacterial phytopathogen Xanthomonas campestris pathovar campestris: relatedness to secretion systems of other gram-negative bacteria. Mol. Gen. Genet. 229:357-364[CrossRef][Medline]. |
| 6. | Economou, A. 1999. Following the leader: bacterial protein export through the Sec pathway. Trends Microbiol. 7:315-320[CrossRef][Medline]. |
| 7. | El Khattabi, M., C. Ockhuijsen, W. Bitter, K. E. Jaeger, and J. Tommassen. 1999. Specificity of the lipase-specific foldases of gram-negative bacteria and the role of the membrane anchor. Mol. Gen. Genet. 261:770-776[CrossRef][Medline]. |
| 8. |
Figurski, D. H., and D. R. Helinski.
1979.
Replication of an origin-containing derivative of plasmid RK2 dependent on a plasmid function provided in trans.
Proc. Natl. Acad. Sci. USA
76:1648-1652 |
| 9. | Filloux, A., M. Bally, G. Ball, M. Akrim, J. Tommassen, and A. Lazdunski. 1990. Protein secretion in gram-negative bacteria: transport across the outer membrane involves common mechanisms in different bacteria. EMBO J. 9:4323-4329[Medline]. |
| 10. | Filloux, A., G. Michel, and M. Bally. 1998. GSP-dependent protein secretion in Gram-negative bacteria: the Xcp system of Pseudomonas aeruginosa. FEMS Microbiol. Rev. 22:177-198[CrossRef][Medline]. |
| 11. |
Francetic, O., and A. P. Pugsley.
1996.
The cryptic general secretory pathway (gsp) operon of Escherichia coli K-12 encodes functional proteins.
J. Bacteriol.
178:3544-3549 |
| 12. | Furste, J. P., W. Pansegrau, R. Frank, H. Blocker, P. Scholz, M. Bagdasarian, and E. Lanka. 1986. Molecular cloning of the plasmid RP4 primase region in a multi-host-range tacP expression vector. Gene 48:119-131[CrossRef][Medline]. |
| 13. | Gerritse, G., R. Ure, F. Bizoullier, and W. J. Quax. 1998. The phenotype enhancement method identifies the Xcp outer membrane secretion machinery from Pseudomonas alcaligenes as a bottleneck for lipase production. J. Biotechnol. 64:23-38[CrossRef][Medline]. |
| 14. |
Hales, L. M., and H. A. Shuman.
1999.
Legionella pneumophila contains a type II general secretion pathway required for growth in amoebae as well as for secretion of the Msp protease.
Infect. Immun.
67:3662-3666 |
| 15. |
Hamood, A. N.,
J. C. Olson,
T. S. Vincent, and B. H. Iglewski.
1989.
Regions of toxin A involved in toxin A excretion in Pseudomonas aeruginosa.
J. Bacteriol.
171:1817-1824 |
| 16. | Hardie, K. R., A. Schulze, M. W. Parker, and J. T. Buckley. 1995. Vibrio spp. secrete proaerolysin as a folded dimer without the need for disulphide bond formation. Mol. Microbiol. 17:1035-1044[CrossRef][Medline]. |
| 17. |
Hirst, T. R., and J. Holmgren.
1987.
Conformation of protein secreted across bacterial outer membranes: a study of enterotoxin translocation from Vibrio cholerae.
Proc. Natl. Acad. Sci. USA
84:7418-7422 |
| 18. |
Hoshino, T., and M. Kageyama.
1980.
Purification and properties of a binding protein for branched-chain amino acids in Pseudomonas aeruginosa.
J. Bacteriol.
141:1055-1063 |
| 19. |
Howard, S. P.,
J. Critch, and A. Bedi.
1993.
Isolation and analysis of eight exe genes and their involvement in extracellular protein secretion and outer membrane assembly in Aeromonas hydrophila.
J. Bacteriol.
175:6695-6703 |
| 20. | Hwang, J., D. J. Fitzgerald, S. Adhya, and I. Pastan. 1987. Functional domains of Pseudomonas exotoxin identified by deletion analysis of the gene expressed in E. coli. Cell 48:129-136[CrossRef][Medline]. |
| 21. | Karlyshev, A. V., and S. MacIntyre. 1995. Cloning and study of the genetic organization of the exe gene cluster of Aeromonas salmonicida. Gene 158:77-82[CrossRef][Medline]. |
| 22. |
Kounnas, M. Z.,
R. E. Morris,
M. R. Thompson,
D. J. FitzGerald,
K. Strickland, and C. B. Saelinger.
1992.
The alpha 2-macroglobulin receptor/low density lipoprotein receptor-related protein binds and internalizes Pseudomonas exotoxin A.
J. Biol. Chem.
267:12420-12423 |
| 23. | Liles, M. R., P. H. Edelstein, and N. P. Cianciotto. 1999. The prepilin peptidase is required for protein secretion by and the virulence of the intracellular pathogen Legionella pneumophila. Mol. Microbiol. 31:959-970[CrossRef][Medline]. |
| 24. |
Lindeberg, M., and A. Collmer.
1992.
Analysis of eight out genes in a cluster required for pectic enzyme secretion by Erwinia chrysanthemi: sequence comparison with secretion genes from other gram-negative bacteria.
J. Bacteriol.
174:7385-7397 |
| 25. |
Lindeberg, M.,
C. M. Boyd,
N. T. Keen, and A. Collmer.
1998.
External loops at the C terminus of Erwinia chrysanthemi pectate lyase C are required for species-specific secretion through the Out type II pathway.
J. Bacteriol.
180:1431-1437 |
| 26. | Lu, H. M., and S. Lory. 1996. A specific targeting domain in mature exotoxin A is required for its extracellular secretion from Pseudomonas aeruginosa. EMBO J. 15:429-436[Medline]. |
| 27. |
Lu, H. M.,
S. Mizushima, and S. Lory.
1993.
A periplasmic intermediate in the extracellular secretion pathway of Pseudomonas aeruginosa exotoxin A.
J. Bacteriol.
175:7463-7467 |
| 28. | McVay, C. S., and A. N. Hamood. 1995. Toxin A secretion in Pseudomonas aeruginosa: the role of the first 30 amino acids of the mature toxin. Mol. Gen. Genet. 249:515-525[CrossRef][Medline]. |
| 29. | Palomaki, T., and H. T. Saarilahti. 1995. The extreme C-terminus is required for secretion of both the native polygalacturonase (PehA) and PehA-Bla hybrid proteins in Erwinia carotovora subsp. carotovora. Mol. Microbiol. 17:449-459[CrossRef][Medline]. |
| 30. | Palomaki, T., and H. T. Saarilahti. 1997. Isolation and characterization of new C-terminal substitution mutations affecting secretion of polygalacturonase in Erwinia carotovora ssp. carotovora. FEBS Lett. 400:122-126[CrossRef][Medline]. |
| 31. |
Pugsley, A. P.
1992.
Translocation of a folded protein across the outer membrane in Escherichia coli.
Proc. Natl. Acad. Sci. USA
89:12058-12062 |
| 32. |
Pugsley, A. P.
1993.
The complete general secretory pathway in gram-negative bacteria.
Microbiol. Rev.
57:50-108 |
| 33. | Pugsley, A. P., O. Francetic, K. Hardie, O. M. Possot, N. Sauvonnet, and A. Seydel. 1997. Pullulanase: model protein substrate for the general secretory pathway of gram-negative bacteria. Folia Microbiol. 42:184-192. |
| 34. | Py, B., G. P. C. Salmond, M. Chippaux, and F. Barras. 1991. Secretion of cellulases in Erwinia chrysanthemi and Erwinia carotovora is species-specific. FEMS Microbiol. Lett. 79:315-322[CrossRef]. |
| 35. | Py, B., M. Chippaux, and F. Barras. 1993. Mutagenesis of cellulase EGZ for studying the general protein secretory pathway in Erwinia chrysanthemi. Mol. Microbiol. 7:785-793[CrossRef][Medline]. |
| 36. | Reeves, P. J., D. Whitcombe, S. Wharam, M. Gibson, G. Allison, N. Bunce, R. Barallon, P. Douglas, V. Mulholland, S. Stevens, D. Walker, and G. P. C. Salmond. 1993. Molecular cloning and characterization of 13 out genes from Erwinia carotovora subspecies carotovora: genes encoding members of a general secretion pathway (GSP) widespread in gram-negative bacteria. Mol. Microbiol. 8:443-456[CrossRef][Medline]. |
| 37. | Roussel, A., and C. Cambillau. 1991. Turbo-Frodo program, p. 86. In Silicon Graphics geometry partners directory. Silicon Graphics, Mountain View, Calif. |
| 38. | Sambrook, J., E. F. Fritsch, and T. Maniatis. 1989. Molecular cloning: a laboratory manual Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y. |
| 39. |
Sandkvist, M.,
L. O. Michel,
L. P. Hough,
V. M. Morales,
M. Bagdasarian,
M. Koomey, and V. J. DiRita.
1997.
General secretion pathway (eps) genes required for toxin secretion and outer membrane biogenesis in Vibrio cholerae.
J. Bacteriol.
179:6994-7003 |
| 40. | Sauvonnet, N., and A. P. Pugsley. 1996. Identification of two regions of Klebsiella oxytoca pullulanase that together are capable of promoting beta-lactamase secretion by the general secretory pathway. Mol. Microbiol. 22:1-7[CrossRef][Medline]. |
| 41. |
Simpson, H., and F. Barras.
1999.
Functional analysis of the carbohydrate-binding domains of Erwinia chrysanthemi Cel5 (endoglucanase Z) and an Escherichia coli putative chitinase.
J. Bacteriol.
181:4611-4616 |
| 42. | Starnbach, M. N., and S. Lory. 1992. The fliA (rpoF) gene of Pseudomonas aeruginosa encodes an alternative sigma factor required for flagellin synthesis. Mol. Microbiol. 6:459-469[Medline]. |
| 43. | Taupiac, M. P., M. Bebien, M. Alami, and B. Beaumelle. 1999. A deletion within the translocation domain of Pseudomonas exotoxin A enhances translocation efficiency and cytotoxicity concomitantly. Mol. Microbiol. 31:1385-1393[CrossRef][Medline]. |
| 44. |
Wong, K. R., and J. T. Buckley.
1991.
Site-directed mutagenesis of a single tryptophan near the middle of the channel-forming toxin aerolysin inhibits its transfer across the outer membrane of Aeromonas salmonicida.
J. Biol. Chem.
266:14451-14456 |
| 45. | Wretlind, B., A. Bjorklind, and O. R. Pavlovskis. 1987. Role of exotoxin A and elastase in the pathogenicity of Pseudomonas aeruginosa strain PAO experimental mouse burn infection. Microb. Pathog. 2:397-404[CrossRef][Medline]. |
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