Journal of Bacteriology, July 2000, p. 4068-4076, Vol. 182, No. 14
0021-9193/00/$04.00+0
Copyright © 2000, American Society for Microbiology. All rights reserved.
Department of Microbiology, Iowa State University, Ames, Iowa 50011
Received 18 December 1998/Accepted 19 January 2000
| |
ABSTRACT |
|---|
|
|
|---|
The use of green fluorescent protein (GFP) as a reporter for
protein localization in Escherichia coli was explored by
creating gene fusions between malE (encoding
maltose-binding protein [MBP]) and a variant of gfp
optimized for fluorescence in bacteria (GFPuv). These constructs encode
hybrid proteins composed of GFP fused to the carboxy-terminal end of
MBP. Fluorescence was not detected when the hybrid protein was
synthesized with the MBP signal sequence. In contrast, when the MBP
signal sequence was deleted, fluorescence was observed. Cell
fractionation studies showed that the fluorescent MBP-GFP hybrid
protein was localized in the cytoplasm, whereas the nonfluorescent
version was localized to the periplasmic space. Smaller MBP-GFP hybrid
proteins, however, exhibited abnormal fractionation. Expression of the
gene fusions in different sec mutants, as well as signal
sequence processing assays, confirmed that the periplasmically localized hybrid proteins were exported by the
sec-dependent pathway. The distinction between fluorescent
and nonfluorescent colonies was exploited as a scorable phenotype to
isolate malE signal sequence mutations. While expression of
hybrid proteins comprised of full-length MBP did not result in
overproduction lethality characteristic of some exported
-galactosidase hybrid proteins, synthesis of shorter, exported
hybrid proteins was toxic to the cells. Purification of MBP-GFP hybrid
protein from the different cellular compartments indicated that GFP is
improperly folded when localized outside of the cytoplasm. These
results suggest that GFP could serve as a useful reporter for genetic
analysis of bacterial protein export and of protein folding.
| |
INTRODUCTION |
|---|
|
|
|---|
The study of bacterial protein
export has been greatly facilitated by the use of reporter genes whose
products serve as enzymatic markers for cellular location. It is well
established that reporter proteins such as alkaline phosphatase
(encoded by phoA) and
-lactamase (encoded by
bla) function optimally only when localized to the periplasmic space. These reporters have been especially valuable in
identifying regions of a protein that promote membrane translocation (6, 24) and allow predictions of membrane topology (37, 38).
-Galactosidase functions in the opposite manner of alkaline
phosphatase and
-lactamase in that it is enzymatically active only
when retained in the cytoplasm (15, 18, 21, 40). When fused
to appropriate export signals,
-galactosidase is localized to
cellular locations that render the enzyme inactive. This phenotype has
been exploited for the isolation of mutants with restored
-galactosidase activity. Many of these mutants ultimately led to the
identification of a number of sec genes that encode
important components of the Escherichia coli protein export
machinery (17, 30, 40).
Another phenotype associated with E. coli strains that
produce exported
-galactosidase fusions is overproduction lethality, resulting from high-level synthesis of the hybrid proteins (3, 13). It has been observed that
-galactosidase is incompatible with components of the export machinery and, as a consequence, the
export pathway becomes "jammed" at the translocation step. This
jamming event appears to be the result of the conformation assumed by
-galactosidase and not of the presence of specific amino acid
sequences that are incompatible with the protein export machinery
(32, 47). Upon sufficient overproduction of
-galactosidase hybrid proteins, the export pathway becomes so
severely jammed that other exported proteins accumulate in the
cytoplasm in their precursor form (3, 13). The
overproduction lethality phenotype has also been exploited to
characterize the protein export pathway. Specifically, mutations that
reverse the lethal effects of hybrid protein overproduction have been
used to reveal important features of the signal sequence of exported
proteins (2, 4, 11, 12).
Despite the successes of using
-galactosidase fusion proteins for
genetic analysis of protein export, biases and limitations to the
genetic selections and screens that use this reporter likely exist,
potentially limiting the spectrum of export mutants that can be
isolated. For example,
-galactosidase fusions have been used in an
attempt to isolate mutants defective in the insertion of integral
membrane proteins. Although this selection yielded an informative class
of mutants defective in disulfide bond formation (1), they
were not revealing as to the cellular components important for membrane translocation.
It is predicted that use of an alternative reporter system may lead to the identification of additional components of the translocation machinery and facilitate better characterization of the components currently known to be important for protein export. In particular, a reporter protein that is efficiently translocated across the cytoplasmic membrane and yet is active only in the cytoplasmic compartment would be useful for initiating new screens for export-defective mutants.
To this end, we have investigated the use of green fluorescent protein
(GFP) from Aequorea victoria as a reporter for protein localization in bacteria. GFP has several features that make it an
attractive candidate for protein localization studies in bacteria. For
example, the protein is active in E. coli, and it has proven to be a useful reporter for a number of investigations in this microorganism, including monitoring gene expression (45),
assessing viability (7), and detecting bacteria in the
environment (33). GFP is active as a chimeric protein and
has provided details of bacterial cell division and chromosome
partitioning (8, 19, 28, 34, 35, 42, 48, 52, 53, 55, 56). An
additional characteristic of GFP that is potentially advantageous for
protein localization studies is that GFP has a molecular mass of 27 kDa, which is significantly smaller than
-galactosidase, whose
molecular mass is ca. 130,000 kDa. GFP also functions as a monomer, in
contrast to the tetrameric configuration required for
-galactosidase
activity. The three-dimensional structure of GFP is also known and
reveals that GFP attains a relatively uncomplicated "
-can"
structure (41, 54) not unlike the structure of bacterial
porin proteins (29). This fact suggests that GFP would
likely be exported from the cytoplasm if fused to appropriate export
signals. Also, GFP emits green light following excitation of an
internal fluorophore composed of a Ser-Tyr-Gly sequence positioned near
the protein's amino terminus. Excitation of GFP-expressing cells can
be performed by exposure to long-wave UV light, making detection of GFP
activity simple and obviating the need for specific substrates.
Although GFP is widely used to probe the events that occur within living cells (39), including protein localization in eukaryotic cells (20, 22, 43), the use of GFP for bacterial protein export studies has not previously been reported. Results presented in this study confirm that GFP can function as a reporter for protein localization in E. coli and hence provides a new tool for the analysis of bacterial protein export.
| |
MATERIALS AND METHODS |
|---|
|
|
|---|
Bacterial strains and plasmids.
MC4100 [araD139
(argF-lac)169 flhD5301 fruA25 relA1 rpsL150
rbsR22] (46) was used as the host for fluorescence
assays and cell fractionations along with the sec
derivatives MM54 [MC4100, secA51(Ts)
leu-59::Tn10] (40), IQ85
[MC100, secY24(Ts)
zhe-33::Tn10] (44),
and CK2163 (MC4100, secBL75Q) (16). DH5
(Gibco-BRL, Gaithersburg, Md.) was used as the host strain for cloning.
XL1-Red (endA1 gyrA96 thi-1 hsdR17 supE44 relA1 lac mutD5 mutS
mutT) (Stratagene, Inc., La Jolla, Calif.) was used as a host for
mutagenesis of plasmid DNA.
Bacterial growth.
Cells were cultured in Luria broth (LB)
(46) or E minimal medium (50) at 30°C.
Ampicillin was added at a concentration of 100 µg/ml when selecting
or maintaining transformants. Transformations were performed as
outlined by Inoue et al. (25). Bacterial growth was
monitored spectrophometrically at an optical density of 600 nm
(OD600). The synthesis of fusion proteins was induced by
addition of 5 µM isopropyl-
-D-thiogalactoside (IPTG).
Cells were also cultured by distributing a lawn of bacteria in LB top
agar (0.7% agar) supplemented with ampicillin onto LB plus ampicillin
plates and positioning a sterile 25-mm filter disk that had been
immersed in dithiothreitol (1 M) at the center of the plate.
Fluorescence assays. Cells were harvested from the surface of LB plates following incubation overnight at 30°C with sterile saline. The cells were washed once in saline, and the OD600 of the cultures was determined. Fluorescence was measured at an excitation wavelength of 365 nm using a Dyna-Quant 200 fluorometer (Amersham Pharmacia Biotech, Piscataway, N.J.) modified with an interference filter (Edmund Scientific, Barrington, N.J.) to detect emission at 509 nm. The fluorescence values of three independently grown cultures were averaged and normalized to the density of the cultures. Fluorescence was expressed as arbitrary units. For comparison between bacterial strains, the fluorescence of MC4100 transformed with pMGC2 was set at a value of 1,000. For detection of fluorescence in colonies, plates were incubated for 3 to 4 days at 30°C. Plates were photographed under UV illumination at 385 nm.
Isolation and identification of export-defective mutants.
pMGP2 was transformed into XL1-Red, and several ampicillin-resistant
colonies were inoculated into 50 ml of LB, cultured overnight and then
subcultured for a second overnight incubation. Plasmid DNA was prepared
from the culture and transformed into DH5
. The transformants were
screened on plates containing 1,000 to 2,000 colonies using a long-wave
UV lamp (395 nm) to identify those that were fluorescent. A
reconstruction experiment was performed by mixing IQ85 and MC4100
transformed with pMGP2 at ratios of 1:1,000 and 1:10,000 and plating
the mixed populations onto LB Amp plates at various concentrations.
After incubation for 4 to 5 days, plates were observed under UV
illumination to identify fluorescent colonies. Both fluorescent and
nonfluorescent colonies were restreaked at 30 and 42°C to test for
temperature sensitivity.
Cell fractionation. Cells were fractionated after growth to an OD of 1.0. Then, 10 ml of cells was pelleted and resuspended in 0.5 ml of periplasting buffer (20% sucrose, 1 mM EDTA, 30,000 U of Ready-Lyse lysozyme [Epicentre Technologies, Madison, Wis.] per ml). Samples were incubated on ice for 5 min. Spheroplasts were then pelleted by centrifugation at 12,000 × g for 2 min. The supernatant was reserved as the periplasmic fraction. The pelleted spheroplasts were lysed in 1 ml of water containing 400 U of Omnicleave endonuclease (Epicentre Technologies) per ml. The samples were incubated for 5 min at room temperature followed by brief sonication at 30 to 40% power. Unlysed cells were removed by centrifugation at 12,000 × g. The supernatant was removed and centrifuged at 138,000 × g for 1 h. The supernatant was reserved as the cytoplasmic fraction, and the pellet containing the membrane fraction was resuspended in 0.5% Sarkosyl, 10 mM Tris-HCl, and 5 mM EDTA. Cells were further fractionated into inner and outer membranes by a modification of the technique described previously (26). Cells were cultured as described above and disrupted by French pressing. The lysate was centrifuged for 20 min at 8,000 × g to remove any unbroken cells. The clarified lysate was layered atop a 15 to 70% discontinuous sucrose gradient and centrifuged at 100,000 × g for 4 h. A band representing the membrane fraction was isolated, diluted 1:2 with 30 mM Tris-HCl (pH 8.0), and then layered on a 53 to 70% discontinuous sucrose gradient and centrifuged at 247,000 × g for 18 h. The fraction representing the inner-membrane proteins was recovered off the top of the 53% sucrose layer, and the outer membrane fraction was collected off the top of the 70% sucrose layer. Each fraction was layered on a second 53 to 70% discontinuous sucrose gradient and centrifuged as described above. The membrane fractions were again diluted, as described above, and centrifuged for 2 h at 100,000 × g to pellet the membrane proteins. The pellets were washed once with 1 M KCl, followed by an additional centrifugation step. The pellets and KCl washes were reserved for analysis by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE).
Cell fractions were analyzed by SDS-PAGE using a standard protocol (23). In brief, proteins were resolved by SDS-12.5% PAGE prior to transfer to nitrocellulose by electroblotting. Immunological detection was performed with rabbit polyclonal antibody specific to either maltose-binding protein (MBP) or GFP (Research Diagnostics, Flanders, N.J.) and alkaline phosphatase-conjugated secondary antibody (Bio-Rad, Inc., Hercules, Calif.). Antibodies to OmpA and ATPase (Research Diagnostics, Flanders, N.J.) were used to monitor fractionation of the outer and inner membranes, respectively.Cell labeling and immune precipitation.
Transformants were
cultured in E minimal medium supplemented with amino acids excluding
methionine and cysteine to an OD600 of 0.3. The cultures
were pulse-labeled with 140 µCi of [35S]methionine and
[35S]cysteine (Amersham Pharmacia Biotech, Piscataway,
N.J.) per ml for 1 min, followed by a 1-min chase using an equal volume of prewarmed E medium containing 0.8% unlabeled methionine and cysteine. Then, 1-ml samples were immediately combined with 50 µl of
ice-cold 100% trichloroacetic acid and incubated on ice for 10 min.
Precipitated proteins were pelleted for 2 min in a microcentrifuge
followed by a wash with cold acetone. The pellet was resuspended in a
solution of 20 mM Tris-HCl (pH 7.5), 2% SDS, and 20 mM EDTA and then
boiled for 2 min. Insoluble material was removed by centrifugation, and
a 30-µl portion was mixed with 650 µl of immunoprecipitation buffer
(50 mM Tris-HCl [pH 8.0], 150 mM EDTA, 2% Triton X-100) and GFP
rabbit antiserum. After 1 h of incubation at 4°C with gentle
mixing, immobilized protein A (Pierce Chemical Co., Rockford, Ill.) was
added, and the samples were incubated for an additional hour at 4°C.
The immune complexes were isolated by centrifugation and washed twice
with immunoprecipitation buffer and twice again with 10 mM Tris-HCl (pH
8.0). The final pellet was resuspended in 50 µl of 10 mM Tris-HCl (pH
8.0) and 50 µl of SDS sample buffer (62.5 mM Tris-HCl [pH 6.8],
20% glycerol, 10%
-mercaptoethanol, 6% SDS, 0.001% bromophenol
blue), boiled for 2 min, and centrifuged for 5 min. Then, 10 µl of
supernatant was resolved by SDS-7.5% PAGE. Immune-precipitated
proteins were visualized using a Bio-Rad GS-363 phosphorimaging system
(Bio-Rad, Inc., Hercules, Calif.).
Hybrid protein purification and characterization.
MBP-GFP
hybrid protein was purified from MC4100 transformed with pMGP2 and
pMGC2. One-liter cultures of each strain were grown in LB supplemented
with glucose at 2 g/liter at 30°C for 24 h. Cells were harvested
by centrifugation, resuspended in 50 ml of column buffer (20 mM
Tris-HCl [pH 7.4], 200 mM NaCl, 1 mM EDTA, 10 mM
-mercaptoethanol), and lysed by French pressing. The resulting cell
lysate was centrifuged for 20 min at 8,000 × g. The
supernatant was then centrifuged for 2 h at 100,000 × g to further clarify the lysate. Then, 3 ml of amylose resin (New
England Biolabs), prepared as described by the manufacturer, was
incubated with the cleared lysate for 20 min at room temperature. The
protein-bound resin was transferred to a 10-ml disposable column and
washed with 50 ml of column buffer. The hybrid protein was eluted with 10 ml of a 10 mM maltose solution and concentrated using a Centricon YM-50 concentrator (Amicon, Inc., Beverly, Mass.). After quantifying the protein spectrophotometrically, samples were diluted to 1 mg/ml in
column buffer. The purity of the protein samples was assessed by
SDS-PAGE and staining with Coomassie dye.
-Mercaptoethanol was
added to the dialyzed protein to a final concentration of 10 mM, and
the sample was incubated for several days at 4°C. The fluorescence of
all samples was monitored using a Fluoreomax-2 spectrofluorometer
(Instruments S.A., JOBIN YVON/SPEX Division, Edison, N.J.). Protein
samples were also transferred to clear, 0.5-ml thin-wall PCR tubes, and
the images were captured using a Kodak DC 260 model digital camera.
| |
RESULTS |
|---|
|
|
|---|
Construction and characterization of MBP-GFP hybrid proteins.
The GFP variant GFPuv (9) was used to test the utility of
GFP as a reporter for protein localization in E. coli. GFPuv was chosen because of its increased intensity of fluorescence relative
to wild-type GFP and the fact that its codon usage has been optimized
for expression in E. coli. MBP from E. coli was used as the target protein for fusion with GFP because it is a well-characterized exported protein normally localized to the periplasmic space. Gene fusions between gfp and
malE were made as described in Materials and Methods,
yielding the constructs shown in Fig. 1A.
One construct, carried by pMGP2, encoded a hybrid protein where GFP was
tagged onto the carboxy terminus of MBP, designated MBP[SS418]-GFP.
Because it was unclear if GFP would function if localized outside of
the cytoplasm, a construct was also assembled where gfp was
fused to a version of malE that lacked a signal sequence.
This gene fusion, carried by pMGC2, encoded the hybrid protein
designated MBP[
SS418]-GFP that was retained in the bacterial
cytoplasm.
|
SS418]-GFP protein was active, as revealed by the green fluorescent colonies of the transformants (Fig.
2). No fluorescent colonies were observed
with the pMGP2 transformants, however, suggesting that export of
MBP-GFP rendered GFP inactive.
|
Localization of MBP-GFP hybrid proteins.
To determine the
cellular location of the MBP-GFP hybrid proteins, cells were
fractionated into cytoplasmic, periplasmic, and membrane samples.
The fractions were resolved by SDS-PAGE and immunoblotted with
antibodies directed against either GFP or MBP. As shown in Fig.
3, MBP[
SS418]-GFP was localized
primarily in the cytoplasm, as was the signal sequenceless MBP species
encoded by pMalc2 (Materials and Methods). In contrast, MBP synthesized with its signal sequence intact, as well as MBP[SS418]-GFP, was localized to the periplasmic space, indicating that GFP hybrid proteins
can be efficiently exported out of the cytoplasmic compartment.
|
Activity of MBP-GFP protein in sec mutants.
To
further characterize the MBP-GFP hybrid proteins with respect to
protein export, the gene fusions were introduced to E. coli
strains known to be defective in protein export. If MBP-GFP is exported
by the normal sec-dependent pathway of protein export, then
it was predicted that fluorescence could be detected if the hybrid proteins were expressed in a sec mutant. The
MBP-GFP-encoding plasmids were transformed into three
well-characterized sec mutants, previously shown to be
important for export of a large number of proteins, including MBP.
Figure 2 shows that fluorescence was detected whenever pMGP2 was
transformed into a secA or secY mutant, even at
30°C, the permissive temperature for growth of these mutants (40, 44). Fluorescence was also detected when pMGP2 was
transformed into a secB mutant. secB is a
nonessential gene involved in the export of MBP, as well as other
E. coli proteins (30, 31). As anticipated,
transformants of pMGC2, encoding MBP[
SS418]-GFP, all remained fluorescent.
|
Construction of additional malE-gfp fusions.
To
further characterize exported GFP hybrid proteins, additional
malE-gfp gene fusions were constructed by deleting the
region between the BglII and the two BamHI sites
on both pMGP2 and pMGC2 (Fig. 1B). Similar to the results seen
with the full-length MBP-GFP hybrids, transformants expressing these
shorter hybrid proteins showed fluorescence only when expressed
without the MBP signal sequence (MBP[
SS128]-GFP) or when the
exported protein (MBP[SS128]-GFP) was expressed in a secY
mutant (Table 1). However, fractionation of the cells revealed that
MBP[SS128]-GFP was not localized to the periplasmic space; rather, it
was consistently detected in the membrane fraction. Additional
fractionation studies revealed that the protein, with a predicted
molecular mass of 40 kDa, fractionated with the outer membrane. In
addition, an apparent breakdown product was found associated with the
inner membrane fraction (Fig. 4). One
possibility considered was that this breakdown product represented GFP
that had been clipped free of the MBP sequences. However, this product
had a molecular mass of 33 kDa, which is significantly larger than GFP.
|
SS128]-GFP, suggesting that the
shorter hybrid protein was extremely unstable when localized out of the cytoplasm.
Expression of full-length MBP-GFP hybrids does not result in
overproduction lethality.
Although GFP behaves similarly to
-galactosidase in that neither protein is active when exported out
of the cytoplasm, it remained to be determined if GFP hybrid proteins
also resulted in an overproduction lethality phenotype characteristic
of exported
-galactosidase fusions. To test the effects of induced
synthesis of MBP-GFP hybrid proteins, we took advantage of the fact
that expression of the malE-gfp gene fusions is under
control of the lac regulatory elements (Fig. 1). We observed
that upon induction of MBP[SS128]-GFP synthesis with IPTG,
transformants continued to grow at a rate similar to cultures grown
without induction (data not shown). Microscopic examination of the
cells also revealed no morphological changes and no evidence of cell
lysis. Induction of hybrid protein synthesis was confirmed by Western
blot analysis (data not shown).
-lactamase). These fusions all exhibit the phenotype associated
with the full-length malE fusions in that they display
fluorescence only when localized to the cytoplasmic compartment, and
their synthesis is not toxic to the cells (B. J. Feilmeier and
G. J. Phillips, unpublished data). Apparently, GFP is not toxic
and can be faithfully localized if a sufficient amount of export
information is provided at the amino-terminal portion of the protein.
In addition, the behavior of these additional hybrid proteins indicates
that the folding of MBP in the periplasmic space does not account for
the lack of GFP fluorescence.
Isolation of export-defective mutants. Since cells expressing GFP localized to the periplasmic space do not fluoresce, we predicted that fluorescence could be used as a phenotype to isolate export-defective mutants. Given our understanding of the protein export process, it was predicted that mutations that map to malE-gfp that block export of the hybrid gene product, including those that alter the signal sequence-encoding region (27), should be isolated.
To test this prediction, pMGP2 was randomly mutagenized by passage through the E. coli mutator strain XL1-Red. Plasmid DNA was prepared from this strain that had been grown for several generations and used to transform DH5
. Several thousand transformants were
screened by visualization with long-wave UV light, and numerous fluorescent colonies were detected. To determine if these transformants fluoresced as a result of a mutation in the malE signal
sequence, a 2-kb EcoRV-BglII restriction fragment
(Fig. 1) was isolated from a number of the mutant pMGP2 plasmids and
used to replace the corresponding segment from unmutagenized pMGP2. The
recombinants obtained all yielded fluorescent transformants. As shown
in Fig. 5, DNA sequence analysis revealed
that the signal sequence was altered in all of the mutants, confirming
the prediction that GFP can serve as a genetic tool for isolation of
export-defective mutants.
|
|
Why doesn't GFP function in the periplasmic space? Although it is not immediately obvious why fluorescence of MBP-GFP is not detected when the hybrid protein is localized to the periplasmic space, a number of possible explanations can be considered. For example, the exported protein could be irreversibly inactivated by modification such as proteolytic cleavage. Although full-length MBP-GFP was detected in immune blot analysis, degradation products related to the hybrid protein were also seen (indicated by the asterisks in Fig. 3). In addition, the amount of full-length MBP-GFP protein detected in the periplasmic space was also substantially reduced in comparison to the cytoplasmic version, perhaps explaining the lack of fluorescence.
To better understand why exported GFP was not fluorescent, we purified the MBP[SS418]-GFP hybrid protein to determine if it displayed fluorescence when no longer confined to the periplasmic space. To accomplish this, we took advantage of the affinity of the MBP moiety for amylose to purify MBP[SS418]-GFP from the periplasmic space, as well as MBP[
SS418]-GFP from the cytoplasmic
compartment. Purified proteins were analyzed by SDS-PAGE and
Western blotting to assess the purity of the proteins. While both the
cytoplasmic and the periplasmic versions of MBP-GFP yielded a single
band of predicted molecular weight, the exported fusion also copurified with a minor fraction of MBP breakdown products (data not shown). As
shown in Fig. 7, illumination of the
samples by UV showed that MBP[
SS418]-GFP isolated from the
cytoplasm was highly fluorescent. In contrast, an equivalent amount of
MBP[SS418]-GFP isolated from the periplasmic space showed no
detectable fluorescence, consistent with the in vivo observations.
These results indicated that the lack of fluorescence in vivo cannot be
attributed solely to diminished levels of the hybrid protein and that
recovery of GFP from the periplasmic environment is not sufficient to
immediately restore fluorescence.
|
SS418]-GFP were treated with acid under conditions
known to denature native GFP, followed by treatment with base to
neutralize the sample and promote refolding of the protein
(51). As anticipated, treatment of the
MBP[
SS418]-GFP protein sample with acid completely
eliminated fluorescence. However, nearly half of the activity was
restored following the addition of base (Fig. 7). Strikingly, GFP
fluorescence was also detected in the sample of MBP-GFP purified from
the periplasmic space following the acid-base treatment regimen. We
attribute the difference in recovery of fluorescence (compare the
scales in Fig. 7), in part, to the higher purity of full-length
MBP[
SS418]-GFP.
Further insight into the properties of MBP-GFP isolated from the
periplasmic space was gained by observing that prolonged incubation of
the protein sample in column buffer (Materials and Methods) alone also
yielded active GFP. A sample of MBP[SS418]-GFP purified from
the periplasmic space was extensively dialyzed against column buffer
without
-mercaptoethanol to remove the reducing agent.
-Mercaptoethanol was added back to a portion of the purified proteins, and the samples were incubated at 4°C for several days. After prolonged incubation (7 days), samples incubated with
-mercaptoethanol fluoresced upon illumination with UV light. In
contrast, samples containing buffer without the reducing agent showed
no detectable levels of fluorescence over the same time period (data
not shown).
The observation that GFP fluorescence could be detected upon prolonged
incubation in buffer containing
-mercaptoethanol suggested that
improper disulfide bond formation is contributing to the misfolding of
GFP. The MBP[SS418]-GFP protein contains two cysteine residues, both located distal to the fusion joint shown in Fig. 1, that could participate in disulfide bond formation, and as a
consequence render GFP inactive. We were, however, unable to detect
fluorescence when MBP[SS418]-GFP was expressed in a
dsbA mutant (1), one known to be defective in
periplasmic disulfide bond formation. Likewise, growth of pMGP2
transformants in the presence of dithiothreitol yielded no fluorescent cells.
| |
DISCUSSION |
|---|
|
|
|---|
We have explored the use of GFP as a reporter for protein localization in E. coli. Because this protein is relatively small and attains a conformation that resembles a porin monomer (41), it was predicted to be compatible with the protein export process of bacteria. To test this prediction and to assess the activity of GFP when localized outside of the cytoplasm, fusions between MBP and GFP (the UV-shifted variant, GFPuv) were constructed. Characterization of these fusions revealed that GFP remained active as long as the protein remained localized to the cytoplasm; export of the protein, however, rendered GFP inactive. Cellular fractionation studies revealed that the MBP[SS418]-GFP hybrid was efficiently exported outside of the cytoplasm. However, although fusions that contained the signal sequence plus 128 amino acids of MBP were exported out of the cytoplasm, they were not faithfully localized to the periplasmic space. Export of the hybrid proteins was also shown to be dependent on the sec pathway since GFP fluorescence was detected in strains carrying different sec alleles. Efficient signal sequence processing of MBP[SS418]-GFP was also confirmed by pulse-chase experiments.
The observation that GFP is active only in the cytoplasm parallels the
observation that
-galactosidase fusions are likewise inactive when
exported out of the cytoplasm. The distinction between Lac+
and Lac
phenotypes has been successfully used to isolate
a number of export-defective mutants. In contrast to
-galactosidase,
however, overproduction of MBP[SS418]-GFP did not cause a
lethal jamming of the protein export machinery. This distinction likely
is attributed to the smaller size and relatively simple conformation of
GFP compared with
-galactosidase. We did observe, however, that
expression of the shorter MBP-GFP hybrid protein
(MBP[SS128]-GFP) was toxic when overproduced. It is not
likely that this toxicity is the result of jamming of the protein
export machinery (3, 12, 32, 47), since the hybrid protein
was found to be efficiently localized outside of the cytoplasm (Fig.
4). Furthermore, export jamming is, in general, reduced when shorter
-galactosidase hybrid proteins are expressed (5), while
the opposite was observed for GFP. The toxic effects of exported
MBP[SS218]-GFP are not unprecedented, however, since
expression of certain LamB fusion proteins is lethal to E. coli by a mechanism that does not involve export jamming
(47). These results indicate that not every GFP fusion
construct may be suitable for analysis of protein export.
The distinction in GFP activity in different subcellular compartments manifests itself in a striking phenotype between fluorescent and nonfluorescent colonies. The ease with which fluorescence can be detected and quantified makes GFP a potentially useful reporter with which to genetically track bacterial protein localization. To test the utility of GFP as a screenable marker for the isolation of export-defective mutants, pMGP2 was randomly mutagenized, and transformants were screened for fluorescent colonies. Fluorescent colonies were shown to carry plasmids where the MBP signal sequence had been mutationally altered, hence blocking entry of MBP[SS128]-GFP into the export pathway. The nature of the signal sequence mutations conformed to those previously isolated for malE (2, 4). The mutations included those that introduced a positive charge to a region of the signal sequence that requires hydrophobicity (Met18 to Lys) and introduction of a proline that could disrupt a requirement for a specific secondary structure (Ser13 to Pro and Leu10 to Pro). We also noted that the Leu10 to Pro mutation is identical to the previously isolated 10-1 malE signal sequence mutation (2, 4, 10).
The sensitivity of GFP as a reporter for export defective mutants was
further tested by performing a reconstruction experiment where mixed
cultures of wild-type E. coli and a secY mutant,
both expressing MBP[SS418]-GFP, were cultured together on an
agar plate. After 3 to 4 days of growth at 30°C, fluorescent colonies
representing the secY mutants were clearly visible. Although
not tested, the sensitivity of detection of mutants could perhaps be
heightened by use of a fluorescence-activated cell sorter to separate
fluorescent from nonfluorescent cells, as has been reported for other
applications (49). Collectively, these results indicate that
GFP can be used as a genetic tool for the isolation of different
classes of export-defective mutants. In addition to the use of GFP to
yield new insights into the protein export process, it also may serve
as a substitute for
-galactosidase as a reporter to determine the
topological orientation of integral membrane proteins (15, 18,
36).
The observation that GFP is active only when localized to the cytoplasm also raises the related question of why the protein is inactive in the periplasmic space. By purifying MBP-GFP protein from both the periplasmic and cytoplasmic compartments, we were able to show that the lack of fluorescence in the periplasmic space could not be attributed solely to diminished levels of the protein. When equivalent amounts of MBP-GFP purified from both the periplasmic space and the cytoplasm were compared, only the GFP isolated from the latter compartment fluoresced. Furthermore, GFP fluorescence was not irreversibly inactivated in the periplasmic space, since fluorescence could be restored to the protein by treatment under conditions known to alter protein conformation, including acid-base treatment and prolonged incubation in the presence of a reducing agent. This latter observation suggests that disulfide bond formation plays a role in inactivation of GFP. Indeed, two cysteine residues are located in the GFP moiety (one in GFP, the other encoded by the region linking malE with gfp) of MBP[SS418]-GFP that could contribute to either intra- or intermolecular disulfide bonds. Altering the reducing environment of the periplasmic space, however, did not restore fluorescence in vivo. Collectively, these results indicate that the periplasmic environment is not suitable for GFP to fold into a conformation required for fluorescent activity. These results further suggest that GFP may also be a useful tool to study protein folding in the periplasmic space.
| |
ACKNOWLEDGMENTS |
|---|
We thank Jim Bardwell, Jon Beckwith, Mary Berlyn, Heather Cook, Laurent Deberault, Alan DiSpirito, Arnold Driessen, Ann Flower, George Georgio, Larry Halverson, Carol Kumomoto, Tom Silhavy, and Martin VanderMortle for helpful discussions, bacterial strains, and reagents.
This study was supported by the National Institutes of Health (GM50836), the Hatch Act, and State of Iowa funds.
| |
ADDENDUM IN PROOF |
|---|
A sensitive screen has recently been described that used lacZ gene fusions to isolate mutants defective in membrane protein localization (H. Tian, D. Boyd, and J. Beckwith, Proc. Natl. Acad. Sci. USA 97:4730-4735, 2000).
| |
FOOTNOTES |
|---|
* Corresponding author. Mailing address: Department of Microbiology, Science I Bldg., Rm. 207, Iowa State University, Ames, IA 50011. Phone: (515) 294-1525. Fax: (515) 294-6019. E-mail: gregory{at}iastate.edu.
Journal Paper no. J-18214 of the Iowa Agriculture and Home
Economics Experiment Station, Ames, Iowa, project no. IOW3220.
| |
REFERENCES |
|---|
|
|
|---|
| 1. | Bardwell, J. C. A., K. McGovern, and J. Beckwith. 1991. Identification of a protein required for disulfide bond formation in vivo. Cell 67:581-589[CrossRef][Medline]. |
| 2. | Bassford, P., and J. Beckwith. 1979. Escherichia coli mutants accumulating the precursor of a secreted protein in the cytoplasm. Nature 277:538-541[CrossRef][Medline]. |
| 3. |
Bassford, P. J., Jr.,
T. J. Silhavy, and J. R. Beckwith.
1979.
Use of gene fusion to study secretion of maltose-binding protein into Escherichia coli periplasm.
J. Bacteriol.
139:19-31 |
| 4. | Bedouelle, H., P. J. Bassford, Jr., A. V. Fowler, I. Zabin, J. Beckwith, and M. Hofnung. 1980. Mutations which alter the function of the signal sequence of the maltose binding protein of Escherichia coli. Nature 285:78-81[CrossRef][Medline]. |
| 5. |
Benson, S. A.,
E. Bremer, and T. J. Silhavy.
1984.
Intragenic regions required for LamB export.
Proc. Natl. Acad. Sci. USA
81:3830-3834 |
| 6. |
Broome-Smith, J. K., and B. G. Spratt.
1986.
A vector for the construction of translational fusions to TEM -lactamase and the analysis of protein export signals and membrane protein topology.
Gene
49:341-349[CrossRef][Medline].
|
| 7. | Casey, W. M., and N. A. Nguyen. 1996. Use of the green fluorescent protein to rapidly assess viability of E. coli in preserved solutions. PDA J. Pharm. Sci. Technol. 50:352-355[Medline]. |
| 8. |
Chen, J. C.,
D. S. Weiss,
J. M. Ghigo, and J. Beckwith.
1999.
Septal localization of FtsQ, an essential cell division protein in Escherichia coli.
J. Bacteriol.
181:521-530 |
| 9. | Crameri, A., E. A. Whitehorn, E. Tate, and W. P. C. Stemmer. 1996. Improved green fluorescent protein by molecular evolution using DNA shuffling. Nat. Biotechnol. 14:315-319[CrossRef][Medline]. |
| 10. |
Emr, S. D., and P. J. Bassford, Jr.
1982.
Localization and processing of outer membrane and periplasmic proteins in Escherichia coli strains harboring export-specific suppressor mutations.
J. Biol. Chem.
257:5852-5860 |
| 11. | Emr, S. D., J. Hedgpeth, J. M. Clement, T. J. Silhavy, and M. Hofnung. 1980. Sequence analysis of mutations that prevent export of lambda receptor, an Escherichia coli outer membrane protein. Nature 285:82-85[CrossRef][Medline]. |
| 12. |
Emr, S. D.,
M. Schwartz, and T. J. Silhavy.
1978.
Mutations altering the cellular localization of the phage lambda receptor, an Escherichia coli outer membrane protein.
Proc. Natl. Acad. Sci. USA
75:5802-5806 |
| 13. | Emr, S. D., and T. J. Silhavy. 1980. Mutations affecting localization of an Escherichia coli outer membrane protein, the bacteriophage lambda receptor. J. Mol. Biol. 141:63-90[CrossRef][Medline]. |
| 14. |
Fikes, J. D., and P. J. Bassford, Jr.
1987.
Export of unprocessed precursor maltose-binding protein to the periplasm of Escherichia coli cells.
J. Bacteriol.
169:2352-2359 |
| 15. | Froshauer, S., G. N. Green, D. Boyd, K. McGovern, and J. Beckwith. 1988. Genetic analysis of the membrane insertion and topology of MalF, a cytoplasmic membrane protein of Escherichia coli. J. Mol. Biol. 200:501-511[CrossRef][Medline]. |
| 16. |
Gannon, P. M., and C. A. Kumamoto.
1993.
Mutations of the molecular chaperone protein SecB, which alter the interaction between SecB and maltose-binding protein.
J. Biol. Chem.
268:1590-1595 |
| 17. |
Gardel, C.,
S. Benson,
J. Hunt,
S. Michaelis, and J. Beckwith.
1987.
secD, a new gene involved in protein export in Escherichia coli.
J. Bacteriol.
169:1286-1290 |
| 18. |
Georgiou, C. D.,
T. J. Dueweke, and R. B. Gennis.
1988.
-Galactosidase gene fusions as probes for the cytoplasmic regions of subunits I and II of the membrane-bound cytochrome d terminal oxidase from Escherichia coli.
J. Biol. Chem.
263:13130-13137 |
| 19. | Ghigo, J. M., D. S. Weiss, J. C. Chen, J. C. Yarrow, and J. Beckwith. 1999. Localization of FtsL to the Escherichia coli septal ring. Mol. Microbiol. 31:725-737[CrossRef][Medline]. |
| 20. | Giorgi, F. D., M. Brini, C. Bastianutto, R. Marsault, M. Montero, P. Pizzo, R. Rosi, and R. Rizzuto. 1996. Targeting aequorin and green fluorescent protein to intracellular organelles. Gene 173:113-117[CrossRef][Medline]. |
| 21. | Hall, M. N., M. Schwartz, and T. J. Silhavy. 1982. Sequence information within the lamB genes is required for proper routing of the bacteriophage lambda receptor protein to the outer membrane of Escherichia coli K-12. J. Mol. Biol. 156:93-112[CrossRef][Medline]. |
| 22. |
Hampton, R. Y.,
A. Koning,
R. Wright, and J. Rine.
1996.
In vivo examination of membrane protein localization and degradation with the green fluorescent protein.
Proc. Natl. Acad. Sci. USA
93:828-833 |
| 23. | Harlow, E., and D. Lane. 1988. Antibodies: a laboratory manual. Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y. |
| 24. |
Hoffman, C. S., and A. Wright.
1985.
Fusions of secreted proteins to alkaline phosphatase: an approach for studying protein secretion.
Proc. Natl. Acad. Sci. USA
82:5107-5111 |
| 25. | Inoue, H., H. Nojima, and H. Okayama. 1990. High efficiency transformation of Escherichia coli with plasmids. Gene 96:23-28[CrossRef][Medline]. |
| 26. | Ito, K., T. Sato, and T. Yura. 1977. Synthesis and assembly of the membrane proteins in E. coli. Cell 11:551-559[CrossRef][Medline]. |
| 27. | Izard, J. W., and D. A. Kendall. 1994. Signal peptides: exquisitely designed transport promoters. Mol. Microbiol. 13:765-773[CrossRef][Medline]. |
| 28. |
Kim, S. K., and J. C. Wang.
1998.
Localization of F plasmid SopB protein to positions near the poles of Escherichia coli cells.
Proc. Natl. Acad. Sci. USA
95:1523-1527 |
| 29. | Kreusch, A., A. Neubuser, E. Schiltz, J. Weckesser, and G. E. Schulz. 1994. Structure of the membrane channel porin from Rhodopseudomonas blastica at 2.0 Å resolution. Protein Sci. 3:58-63[Abstract]. |
| 30. |
Kumamoto, C. A., and J. Beckwith.
1983.
Mutations in a new gene, secB, cause defective protein localization in Escherichia coli.
J. Bacteriol.
154:253-260 |
| 31. |
Kumamoto, C. A., and J. Beckwith.
1985.
Evidence for specificity at an early step in protein export in Escherichia coli.
J. Bacteriol.
163:267-274 |
| 32. |
Lee, C.,
P. Li,
H. Inouye,
E. R. Brickman, and J. Beckwith.
1989.
Genetic studies on the inability of -galactosidase to be translocated across the Escherichia coli cytoplasmic membrane.
J. Bacteriol.
171:4609-4616 |
| 33. | Leff, L. G., and A. A. Leff. 1996. Use of green fluorescent protein to monitor survival of genetically engineered bacteria in aquatic environments. Appl. Environ. Microbiol. 62:3486-3468[Abstract]. |
| 34. |
Ma, X.,
D. W. Ehhardt, and W. Margolin.
1996.
Colocalization of cell division proteins FtsZ and FtsA to cytoskeletal structures in living Escherichia coli cells by using green fluorescent protein.
Proc. Natl. Acad. Sci. USA
93:12998-13003 |
| 35. |
Ma, X.,
Q. Sun,
R. Wang,
G. Singh,
E. L. Jonietz, and W. Margolin.
1997.
Interactions between heterologous FtsA and FtsZ proteins at the FtsZ ring.
J. Bacteriol.
179:6788-6797 |
| 36. |
Manoil, C.
1990.
Analysis of protein localization by use of gene fusions with complementary properties.
J. Bacteriol.
172:1035-1042 |
| 37. |
Manoil, C., and J. Beckwith.
1985.
TnphoA: a transposon probe for protein export signals.
Proc. Natl. Acad. Sci. USA
82:8129-8133 |
| 38. |
Manoil, C., and J. Beckwith.
1986.
A genetic approach to analyzing membrane protein topology.
Science
233:1403-1408 |
| 39. | Misteli, T., and D. L. Spector. 1997. Application of the green fluorescent protein in cell biology and biotechnology. Nat. Biotechnol. 15:961-964[CrossRef][Medline]. |
| 40. | Oliver, D. B., and J. Beckwith. 1981. E. coli mutant pleiotropically defective in the export of secreted proteins. Cell 25:765-772[CrossRef][Medline]. |
| 41. | Ormo, M. B., A. Cubitt, K. Kallio, L. A. Gross, R. Y. Tsien, and S. J. Remington. 1996. Crystal structure of the Aequorea victoria green fluorescent protein. Science 273:1392-1395[Abstract]. |
| 42. | Raskin, D. M., and P. A. de Boer. 1997. The MinE ring: an FtsZ-independent cell structure required for selection of the correct division site in E. coli. Cell 91:685-694[CrossRef][Medline]. |
| 43. | Rizzuto, R., M. Brini, P. Pizzo, M. Murgia, and T. Pozzan. 1995. Chimeric green fluorescent protein: a new tool for visualizing subcellular organelles in living cells. Curr. Biol. 5:635-642[CrossRef][Medline]. |
| 44. | Shiba, K., K. Ito, T. Yura, and D. P. Cerretti. 1984. A defined mutation in the protein export gene within the spc ribosomal protein operon of Escherichia coli: isolation and characterization of a new temperature-sensitive secY mutant. EMBO J. 3:631-635[Medline]. |
| 45. |
Siegele, D. A., and J. C. Hu.
1997.
Gene expression from plasmids containing the araBAD promoter at subsaturating inducer concentrations represents mixed populations.
Proc. Natl. Acad. Sci. USA
94:8168-8172 |
| 46. | Silhavy, T. J., M. L. Berman, and L. W. Enquist. 1984. Experiments with gene fusions. Cold Spring Harbor Press, Cold Spring Harbor, N.Y. |
| 47. |
Snyder, W. B., and T. J. Silhavy.
1995.
-Galactosidase is inactivated by intermolecular disulfide bonds and is toxic when secreted to the periplasm of Escherichia coli.
J. Bacteriol.
177:953-963 |
| 48. |
Sun, Q., and W. Margolin.
1998.
FtsZ dynamics during the division cycle of live Escherichia coli cells.
J. Bacteriol.
180:2050-2056 |
| 49. | Valdivia, R. H., and S. Falkow. 1996. Bacterial genetics by flow cytometry: rapid isolation of Salmonella typhimurium acid-inducible promoters by differential fluorescence induction. Mol. Microbiol. 22:367-378[CrossRef][Medline]. |
| 50. | Vogel, H. J., and D. M. Bonner. 1955. Acetylorornithinase of Escherichia coli: partial purification and some properties. J. Biol. Chem. 218:97-106. |
| 51. | Ward, W. W., and S. H. Bokman. 1982. Reversible denaturation of Aequorea green-fluorescent protein: physical separation and characterization of the renatured protein. Biochemistry 21:4535-4540[CrossRef][Medline]. |
| 52. |
Weiss, D. S.,
J. C. Chen,
J. M. Ghigo,
D. Boyd, and J. Beckwith.
1999.
Localization of FtsI (PBP3) to the septal ring requires its membrane anchor, the Z ring, FtsA, FtsQ, and FtsL.
J. Bacteriol.
181:508-520 |
| 53. | Weiss, D. S., K. Pogliano, M. Carson, L. M. Guzman, C. Fraipont, M. Nguyen-Disteche, R. Losick, and J. Beckwith. 1997. Localization of the Escherichia coli cell division protein Ftsl (PBP3) to the division site and cell pole. Mol. Microbiol. 25:671-681[CrossRef][Medline]. |
| 54. | Yang, F., L. G. Moss, and G. N. Phillips, Jr. 1996. The molecular structure of green fluorescent protein. Nat. Biotechnol. 14:1246-1251[CrossRef][Medline]. |
| 55. | Yu, X. C., and W. Margolin. 1997. Ca2+-mediated GTP-dependent dynamic assembly of bacterial cell division protein FtsZ into asters and polymer networks in vitro. EMBO J. 16:5455-5463[CrossRef][Medline]. |
| 56. |
Yu, X. C.,
A. H. Tran,
Q. Sun, and W. Margolin.
1998.
Localization of cell division protein FtsK to the Escherichia coli septum and identification of a potential N-terminal targeting domain.
J. Bacteriol.
180:1296-1304 |
This article has been cited by other articles: