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Journal of Bacteriology, August 2000, p. 4443-4452, Vol. 182, No. 16
0021-9193/00/$04.00+0
Copyright © 2000, American Society for Microbiology. All rights reserved.
Glucose Transporter Mutants of Escherichia
coli K-12 with Changes in Substrate Recognition of
IICBGlc and Induction Behavior of the
ptsG Gene
Tim
Zeppenfeld,
Christina
Larisch,
Joseph W.
Lengeler, and
Knut
Jahreis*
Arbeitsgruppe Genetik, Fachbereich
Biologie/Chemie, Universität Osnabrück, D-49069
Osnabrück, Germany
Received 31 March 2000/Accepted 22 May 2000
 |
ABSTRACT |
In Escherichia coli K-12, the major glucose transporter
with a central role in carbon catabolite repression and in inducer exclusion is the phosphoenolpyruvate-dependent
glucose:phosphotransferase system (PTS). Its membrane-bound subunit,
IICBGlc, is encoded by the gene ptsG; its
soluble domain, IIAGlc, is encoded by crr,
which is a member of the pts operon. The system is
inducible by D-glucose and, to a lesser degree, by
L-sorbose. The regulation of ptsG transcription
was analyzed by testing the induction of IICBGlc
transporter activity and of a single-copy
(ptsGop-lacZ)
fusion. Among mutations found to affect directly ptsG
expression were those altering the activity of adenylate cyclase
(cyaA), the repressor DgsA (dgsA; also called
Mlc), the general PTS proteins enzyme I (ptsI) and
histidine carrier protein HPr (ptsH), and the
IIAGlc and IIBGlc domains, as well as several
authentic and newly isolated UmgC mutations. The latter, originally
thought to map in the repressor gene umgC outside the
ptsG locus, were found to represent ptsG alleles. These affected invariably the substrate specificity of the
IICBGlc domain, thus allowing efficient transport and
phosphorylation of substrates normally transported very poorly or not
at all by this PTS. Simultaneously, all of these substrates became
inducers for ptsG. From the analysis of the mutants, from
cis-trans dominance tests, and from the identification of
the amino acid residues mutated in the UmgC mutants, a new regulatory
mechanism involved in ptsG induction is postulated.
According to this model, the phosphorylation state of
IIBGlc modulates IICGlc which, directly or
indirectly, controls the repressor DgsA and hence ptsG
expression. By the same mechanism, glucose uptake and phosphorylation
also control the expression of the pts operon and probably
of all operons controlled by the repressor DgsA.
 |
INTRODUCTION |
In Escherichia coli K-12,
D-glucose (Glc) is taken up and concomitantly
phosphorylated either by the glucose-specific enzyme II (EII)
transporter (IIGlc) or the mannose-specific EII
transporter (IIMan) (genes manXYZ) of the
phosphoenolpyruvate-dependent carbohydrate phosphotransferase system
(PTS) (for reviews, see references 10 and
21). As for most other PTS carbohydrates, the
phosphoryl groups are sequentially transferred from PEP through
two common intermediates, enzyme I (EI; gene: ptsI) and the
phosphohistidine carrier protein (HPr; gene: ptsH), to
sugar-specific EII (IICBGlc; see below) and to glucose
(for a review see reference 41).
IIGlc consists of two subunits, IIAGlc
(crr [catabolite repression resistance]) and
membrane-bound IICBGlc (ptsG) (8).
The crr gene is part of the ptsHI crr operon
(46) separated from the ptsG gene, which maps at
25.0 min (4). IIAGlc is a small hydrophilic
protein which has, in addition to its transport function, a central
regulatory role in carbon catabolite repression and inducer exclusion
(for a review, see reference 22). The
IICBGlc subunit is composed of an amino-terminal,
hydrophobic IICGlc domain, which largely determines
substrate specificity, and a carboxy-terminal, hydrophilic
IIBGlc domain, which is phosphorylated at the Cys421
residue (32). The system normally recognizes glucose as well
as methyl-
-D-glucoside (
MG),
5-thio-D-glucoside, L-sorbose and, with a low
affinity, 2-deoxyglucose (2DG) (for a review, see reference
40).
Only little attention has been paid to the regulation of
ptsG expression, although IICBGlc has an
outstanding regulatory function in establishing glucose as a favored
carbon source. Moreover, for both E. coli (45) and Salmonella enterica serovar Typhimurium (55),
it was demonstrated that the activity of IICBGlc is the
rate-limiting step in glucose utilization. Both ptsG
expression (19, 37, 43) and manXYZ expression
(36) are positively regulated by the cyclic AMP (cAMP)-cAMP
receptor protein (CrpA) complex and negatively controlled by the DgsA
(Mlc) protein. The dgsA locus (deoxyglucose sensitive) at
35.9 min on the E. coli chromosome was discovered as a
suppressor mutation that enables ptsG-negative mutants to
grow anaerobically on glucose via a constitutively expressed
IIMan system and enhanced sensitivity to 2DG, a major
substrate of this transport system (44). The DgsA protein
was rediscovered recently and renamed Mlc (making large colonies)
(16). Plumbridge (36) demonstrated that
dgsA and mlc are the same gene; for priority reasons and according to Berlyn (4), we call this gene
dgsA. The DgsA protein represses its own synthesis as well
as the expression of the ptsHI crr operon (18,
38) and the mal regulon (7). It may
represent a novel global repressor and may counteract the global
regulator cAMP-CrpA to ensure the expression of those genes, which are
linked to glucose metabolism (19, 38, 39, 44). The inducer
for DgsA, however, has not been identified.
A different type of ptsG regulatory mutation, called
umgC (uptake of
MG control; umg is the former
name of ptsG), was described by Jones-Mortimer and Kornberg
(17). This mutation, which was claimed to map close to but
not in ptsG, enabled E. coli cells with inactive
IIMan to grow on mannose (Man) and glucosamine (GlcN or
Glm). The authors concluded that mannose and glucosamine are not
inducers of the glucose PTS, that the umgC mutation causes
constitutive ptsG expression, and that umgC
encodes a repressor, UmgC. In this paper, we describe the isolation and
characterization of UmgC-like mutants which were selected as described
by Jones-Mortimer and Kornberg (17). Moreover, we
reinvestigated one of their UmgC mutants and showed that
umgC mutations map within the ptsG allele and
alter characteristically the ptsG induction pattern and
IICBGlc transporter activity.
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MATERIALS AND METHODS |
Bacterial strains, plasmids, and media.
The E. coli K-12 strains and plasmids used in this study are listed in
Table 1. LJ110 (Fnr+) was
obtained from a cross of K-12(P1) with W3110 and by selection for
growth on minimal agar plates supplemented with 0.2% glycerol and 10 mM KNO3 under anaerobic conditions. Cells were routinely grown either in standard phosphate minimal medium (54)
supplemented with 0.2% various carbon sources, in Lennox broth without
glucose and calcium ions, or in 2xTY medium as described by Ausubel et al. (2). The utilization of various carbohydrates was
screened on MacConkey agar plates (Difco) containing 1% of the
indicated carbon source. Antibiotics were used at the following
concentrations: tetracycline, 10 mg/liter; ampicillin, 50 mg/liter;
chloramphenicol, 25 mg/liter; kanamycin, 25 mg/liter; and
spectinomycin, 1,500 mg/liter for the multicopy plasmid system or 100 mg/liter in rich medium and 500 mg/liter in minimal medium for the
single-copy system. Transductions were carried out with P1
vir essentially as described by Arber (1).
Construction of single-copy
(ptsGop-lacZ) and
(ptsHp-lacZ) fusions.
For the construction of a
single-copy
(ptsGop-lacZ) fusion, the promoter-operator
region was amplified from genomic DNA of LJ110 by PCR using the
oligonucleotides ptsG4 (5'-AATCAACCTGCGATGGTTCC-3'; hybridizing to bp
337 to
318 upstream of the ptsG
start codon) and ptsG3 (5'-AATACCTGCGATAGGCAGTACGGATACCGG-3',
hybridizing to codons 19 to 28 for IICBGlc). The
product was treated with Klenow DNA polymerase to produce blunt ends
and was inserted into the EcoRV restriction site of pTIM101.
Vector pTIM101 essentially is a derivative of plasmid pIC-19H
(26) in which the multiple cloning site was deleted. It
carries a truncated Tn1721 transposon (52) which
consists of the inverted repeat regions, the multiple cloning site of
pBluescript II SK(+) (HaeII box) (2), and the
so-called
element of plasmid pHP45
(42). The
element provides transcriptional and translational stop signals to
prevent read-through from any potential upstream promoter and an
spc gene for spectinomycin and streptomycin resistance. The
orientation of the PCR insert was controlled by DNA sequencing. Downstream of the ptsG promoter region, the promoterless
lacZ gene from plasmid pRU869 (53) was inserted
into the HindIII/SalI restriction sites to
produce plasmid pTIM103.
For the construction of a single-copy

(
ptsHp-lacZ)
fusion, the promoter-operator region was amplified from genomic DNA of
LJ110 by PCR using the oligonucleotides pts1
(5'-GATCTCTTCACTGAGAAAGAATTGC-3',
hybridizing to codons 313 to 321 of CysK) and pts2 (5'-ACATTGTATTTCCCCAACTTATAGG-3',
hybridizing to 21 bp upstream of
ptsH and codon 1 of
HPr). The
420-bp fragment was treated with Klenow DNA polymerase to
produce
blunt ends and was inserted into the
EcoRV
restriction site of
pTIM101. The orientation of the PCR insert was
controlled by DNA
sequencing. Downstream of the
ptsH
promoter region, the promoterless
lacZ gene from plasmid
pRU869 was inserted into the
HindIII/
SalI
restriction sites to produce plasmid
pTIM104.
PS8/F'8 (
gal+) (
11) was transformed
with plasmids pTIM103 and pTIM104. To allow transposition onto the F'8
plasmid, cells
were transformed with plasmid pPSO110 (
54),
which carries the
gene for the Tn
1721 transposase. F'
plasmids containing the

(
ptsGop-lacZ)
or

(
ptsHp-lacZ) transcriptional fusions on the truncated,
artificial
transposon were transferred into appropriate test strains.
Loss
of mobilized pTIM103 or pTIM104 was controlled by simultaneous
loss of Ap
r.
Isolation of plasmid DNA, restriction analysis, and cloning
procedures.
All manipulations with recombinant DNA were carried
out using standard procedures as described previously (2).
Plasmid DNA was prepared either by using standard phenol extraction
protocols as described previously (48) or by using the
JETstar DNA purification system (Genomed, Bad Oeynhausen, Germany).
Restriction enzymes were purchased from New England Biolabs
(Schwalbach, Germany). They were used according to the recommendations
of the supplier. Oligonucleotides for sequencing or PCR were purchased
from Interactiva (Ulm, Germany).
Mutation analysis.
DNA amplification of the ptsG
alleles was done as described by Saiki et al. (47) using
Taq DNA polymerase from Roche Diagnostics, Mannheim,
Germany, or Goldstar polymerase from Eurogentec, Seraing, Belgium. The
forward PCR primer ptsG+
(5'-AACTGCAGGTGTTTAAGAATGCATTTGCT-3') for the amplification of ptsG contained an engineered
PstI restriction site (underlined) upstream of an artificial
GTG start codon (boldface; the original ATG was changed to GTG to lower
the levels of expression of ptsG after subcloning into pSU19
[see below]). The reverse PCR primer ptsG
(5'-CTTAAAGCTTAGTGGTTACGGATGTA-3') introduced an
engineered HindIII restriction site (underlined)
immediately downstream of the TAA stop codon (Fig.
1). The reaction profile consisted of 32 cycles of denaturing at 94°C for 1 s, annealing at 50°C for
1 s, and extension at 72°C for 45 s in an Air Thermo-Cycler 1605 from Idaho Technology Inc., Idaho Falls, Idaho. PCR products were
directly purified using a Wizard PCR Preps DNA purification system
(Promega Corp., Mannheim, Germany). All DNA sequencing reactions were
performed by the dideoxy chain termination method (2) using
an ALFexpress AutoRead or dATP labeling mix sequencing kit from
Amersham-Pharmacia Biotech, Freiburg, Germany. The nucleotide sequences
of both strands were determined after subcloning into vector pSU19
(27) using 5' cyanine fluorescent dye (Cy-5)-labeled universal and reverse primers or unlabeled internal ptsG
sequencing oligonucleotides priming about every 250 bp within the gene.
Computer analysis was done with DNASIS sequencing analysis software
(Hitachi) and by using the BLAST programs and database services
provided by the National Center for Biotechnology Information,
Bethesda, Md.

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FIG. 1.
Construction of ptsG expression plasmids. The
ptsG alleles from various strains were amplified by PCR as
described in Materials and Methods, introducing artificial
PstI (upstream) and HindIII (downstream)
restriction sites. The original ATG start codon of ptsG was
changed to GTG (boldface). Fragments were subcloned into pTM30 cut with
PstI and HindIII in frame with an artificial
ATG start codon provided by the expression vector. All constructs
provided three additional, amino-terminal amino acid residues. The
expression vector also provided a strictly regulated tac
promoter-operator (tacpo), a lacIq
gene, and a ribosome binding site (rbs) in an optimal position with
respect to the start codon.
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Construction of defined carboxy-terminal deletions in
IICBGlc.
Plasmid pSTJ30
320 is a derivative of
pTM110 which was digested with restriction enzymes StuI (bp
957 to 963 in ptsG) and HindIII (in the
polylinker region downstream of ptsG) (Fig. 1). DNA was
treated with Klenow DNA polymerase to generate blunt ends and was
religated. The open reading frame encoded a protein which consisted of
up to amino acid 320 of IICBGlc and six additional,
plasmid-encoded amino acids (AWYLTN). All other pSTJ30 deletion
plasmids were generated using pTM110 as a template, the ptsG+ primer as
an upstream primer, and an appropriate downstream primer in a PCR. The
following reverse PCR primers were used for the different deletion
plasmids: for pSTJ30
396, ptsG21
(5'-CCTGAAGCTTTTGCATCTTCAGTCG-3'); for
pSTJ30
436, ptsG22 (5'-TGATAAGCTTTAGACACATCAGCAA-3'); and for
pSTJ30
459, ptsG23 (5'-GAAAAGCTTCTGAACACCAGAACC-3').
All primers created an artificial HindIII
restriction site (underlined). The last number in each plasmid name
indicates the last original PtsG amino acid encoded by the particular
construct. PCR fragments were treated with HindIII and
PstI and cloned into pTM30. All plasmid constructs were
confirmed by DNA sequencing. The addition of at least 50 µM
isopropyl-
-D-thiogalactopyranoside (IPTG) to cells
carrying these deletion plasmids led to complete growth inhibition,
indicating that truncated proteins were expressed from these plasmids
and, like wild-type PtsG, were lethal for the cells (data not shown).
Transport and enzyme assays.
Transport of
-D-[methyl-14C]glucopyranoside
(final concentration, 25 µM) was measured in exponentially grown
cells as described previously (49). Samples were taken after
10, 20, and 30 s. Transport activities were calculated from the
initial uptake rates. The
-galactosidase assay was performed as
described by Pardee and Prestige (34). All enzyme activities
are in nanomoles per milligram of protein per minute.
 |
RESULTS |
Isolation and characterization of UmgC mutants of E. coli.
Our isogenic E. coli derivatives which lack the
IIMan transporter due to a mutation in the manA
locus (genes manXYZ) (9) are unable to utilize
D-glucosamine (GlcN or Glm) or D-mannose (Man) as a sole carbon source (Table 2). Cells
of the ManA
mutants LJ130 and LJ132 had to be incubated
for 3 days at 37°C on minimal glucosamine plates before small
colonies appeared. One hundred of these were isolated, purified, and
tested for their ability to grow on various carbohydrates. The majority
(80%) of the isolated colonies had a pleiotropic phenotype, i.e., they became Glm+ Man+ and at the same time became
sensitive to D-arabinitol (Atls) and ribitol
(Rtls). Each of these four carbohydrates has been discussed
to be a minor gratuitous substrate for IICBGlc, and
transport occurs only when the transporter is expressed constitutively
(reviewed in references 39 and
40). No degradation pathways for Atl-5-phosphate and
Rtl-5-phosphate are present in E. coli K-12, thus explaining
the sensitivity (14). Two mutants, LZ1 and LJ132-3, derived
from LJ130 and LJ132, respectively, were further characterized,
compared to an authentic UmgC mutant (HK727), and used to map the new
mutations (Table 2).
Mapping by P1 transduction for both LZ1 and LJ132-3 placed the new
mutations close to
zce-726::Tn
10 (95%
coupling to
ptsG)
and also close to or in
ptsG
(data not shown). Strain HK727 carries
an authentic UmgC mutation, a
ManA

allele, the
ptsI19(Ts) allele, and a
crr(Ts) mutation, which
prevent growth on PTS carbohydrates
at temperatures above 30°C
(
30,
35). As expected for a
strain lacking II
Man but carrying the UmgC mutation, HK727
is able to grow on GlcN
plates; like LZ1 and LJ132-3, it is also
Man
+ Atl
s Rtl
s. When incubation is
done at 42°C, this phenotype changes to Glm

Man

Atl
r Rtl
r, indicating that
cells are sensitive to the two pentitols only
in the presence of a
functional PTS. To differentiate between
PTS- and UmgC-dependent
effects, the
ptsG727 allele from HK727
was
transduced into LJ130 after the
zce-727::Tn
10 cassette from
CAG12078
was transferred into HK727. The majority (76%) of Tet
r
transductants of LJ130 (e.g., LZ727 in Table
2) exhibited a
temperature-resistant Pts
+ phenotype and were
Glm
+ Man
+ Atl
s Rtl
s,
i.e., the UmgC phenotype. According to these mapping data, mutants
LZ1
and LJ132-3 thus seem to correspond to authentic UmgC mutants.
Any
further attempts to uncouple the
ptsG and
umgC
markers in
LJ132-3, LZ1-2, or LZ727 failed (data not shown). Thus, a
mutation
in
ptsG or a mutation very close to it seems to be
responsible
for GlcN, Man, Rtl, and Atl uptake in the UmgC
mutants.
Exact growth rates were determined for the various wild-type and mutant
strains on different carbon sources (Table
2). Strains
included a
derivative of LJ130 carrying a defined
dgsA::Tn
10kan mutation from KM563. This
mutant, LJ138, did not show a UmgC phenotype,
although it expressed
ptsG in a constitutive way (see below).
Thus, a change in
the substrate specificity of IICB
Glc rather than
constitutive expression of
ptsG was responsible for
the
characteristic change in UmgC mutants. The generation times
for LJ110
and isogenic derivatives on glycerol (90 to 96 min)
and on glucose (72 to 75 min) were almost equal, except for the
DgsA

mutant,
which had a generation time of 115 min on glycerol. This
result seems
to corroborate the hypothesis that DgsA is a global
rather than a
glucose-specific regulator (
7,
38,
39). While
growth on
mannose was relatively similar for a ManA
+ strain and a
UmgC mutant, growth of the latter on glucosamine
was retarded (210 and
280 min compared to 126 min). Finally, the
addition of 1% ribitol or
arabinitol to cells of LZ1 or LJ132-3
growing exponentially on glycerol
caused growth inhibition after
three cell division cycles, while mutant
but not wild-type cells
preinduced with glucose stopped growing almost
immediately (data
not shown). The induction of
ptsG by the
two pentitols in the
mutants but not in the wild type was responsible
for this effect
(see
below).
Induction of ptsG expression in various isogenic
mutants.
To test the ptsG expression levels, various
uninduced and induced strains were tested for
MG uptake (Table
3). IICBGlc activity in the
wild type (LJ130) was induced about threefold by glucose, while LJ138
exhibited the expected constitutive transport activity. LZ1 and LJ132-3
showed increased and decreased uninduced transport activities,
respectively. Both strains could be induced by the addition of glucose
but, interestingly and in contrast to LJ130, also by the addition of
glucosamine, mannose, or ribitol. The induced UmgC mutant LZ1 always
exhibited higher transport activity than LJ130, thus resembling the
DgsA
mutant LJ138. Introduction of the
dgsA::Tn10kan mutation into LZ1
(producing strain LZ170) led to fully constitutive uptake activity
which resembled the fully constitutive ptsG expression of
LZ727 and that of other authentic UmgC strains, e.g., JM1110 (17). Interestingly, the induction levels in the wild type
and the mutants LZ1 and LJ132-3 were always lower than those in the fully constitutive mutants LZ170 and LZ727.
The inducibility of
ptsG expression in LZ1 was confirmed
both by measuring the mRNA levels in cells growing either on glycerol
or glucose (data not shown) and by monitoring the
ptsG
induction
of both wild-type LZ110 and mutants LZ100 and LZ138 by use of
the single-copy

(
ptsGop-lacZ) fusion. At 15 min after the
addition
of glucose, in both wild-type LZ110 and
ptsG1 mutant LZ100,

-galactosidase
activities
started to increase, reaching a maximum at about 120
min after
induction (Fig.
2).

-Galactosidase
activities slowly
decreased at the end of the exponential growth phase
(data not
shown). Basal LacZ activity was slightly higher in LZ100 but
could
be induced threefold, as in the wild-type strain. In the
DgsA

mutant LZ138, maximum enzyme activity was high
compared to those
in LZ110 and LZ100; the addition of glucose caused a
decrease
in

-galactosidase activity probably as a consequence of a
reduction
in the intracellular cAMP level. The

(
ptsGop-lacZ) fusion was
also used to test for induction
by substrates other than glucose
(Table
4). Induction in the wild type occurred
only after the
addition of glucose, whereas
ptsG expression
in LZ100 was also
induced by glucose, glucosamine, mannose, ribitol,
D-fructose
(Fru), and
D-mannitol (Mtl) but not
by the non-PTS carbohydrate
L-arabinose (Ara).

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FIG. 2.
Kinetics of induction of (ptsGop-lacZ) in
strains LZ110 (wild type), LZ100 (ptsG1), and
LZ138 (dgsA::kan). Cells harboring a
single copy of the (ptsGop-lacZ) translational fusion on
F'8 were pregrown overnight in minimal medium with 0.2% glycerol and
used to inoculate fresh medium with 0.2% glycerol. Glucose (0.2%) was
added in the early exponential growth phase at 0 min. Samples were
harvested and analyzed for -galactosidase activity (SpAc). Symbols:
, uninduced LZ110; , induced LZ110; , uninduced LZ100; ,
induced LZ100; , uninduced LZ138; , induced LZ138.
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The fusions were also used to test in our isogenic mutants, all derived
from
E. coli W3110, the influence of defined mutations
known
to affect
ptsG expression (
19,
37). The
cyaA854 mutant
LZ120 and the

(
ptsG::
cat) mutant LZ150 had low
uninduced levels
of

-galactosidase activities that could not be
induced by any
of the tested carbohydrates. This result implies that
the induction
of
ptsG depends on the presence of cAMP-CrpA
and of IICB
Glc, even though glucose can be transported by
the II
Man system in a

(
ptsG::
cat) mutant, as shown by the
ability to grow
on glucose (Table
2). Introduction of a defined

(
ptsHI crr::
kan)
mutation led to
complete derepression of
ptsG expression in LZ140,
whereas
the double mutant LZ160 [

(
ptsHI
crr::
kan)

(
ptsG::
cat)]
exhibited

-galactosidase activity that was below even the basal
expression
level in LZ150. Thus, intracellular glucose is not
sufficient and the
presence of nonphosphorylated IICB
Glc is required for
ptsG induction. Strains carrying the

(
dgsA::
kan)
mutation exhibited
constitutive

-galactosidase activity independently
of the presence
(LZ138) or absence (LZ139) of
ptsG. These results
confirm
and extend data obtained by Plumbridge (
38), who used
strain
JM101 and derivatives thereof for similar experiments (see
Discussion).
Subcloning and sequencing of ptsG alleles from various
IICBGlc mutants.
All carbohydrates (Table 4) that
induce ptsG expression in LZ1 have been postulated to be
substrates of either wild type (40, 41) or mutant
(3) IICBGlc. We speculated that a mutation in
this strain and in the other mutants changing the induction and
substrate specificity of IICBGlc and not overexpression of
the transporter per se was responsible for the UmgC phenotype. This
hypothesis implied that there may be no distinct gene for a UmgC
repressor protein, thus explaining our failure to detect a
umgC gene in the vicinity of ptsG. To test this
hypothesis, the ptsG alleles from all the mutants were amplified by a PCR. Additionally, strain JWL184-1, which was described as being semiconstitutive for ptsG expression
(23), was included in this approach. It exhibited a strong
Glc+ phenotype (55-min generation time) and weak
Man+ and Glm
Atlr
Rtlr phenotypes. The introduction of defined
ptsG or manXYZ mutations revealed that JWL184-1
carries a thus-far-unidentified manXYZ mutation and perhaps
a umgC-like mutation in ptsG (Table 2).
Sequencing analysis showed that each mutant carried a single-base-pair
substitution which caused an amino acid exchange (Table
5). Interestingly, the same Ser169 is
replaced either by a Phe
residue in LZ1 or by a Pro residue in LJ132-3.
The mutation Glu387Gly
in the HK727
ptsG allele is located
in the putative linker region
between the IIC and IIB domains of the
glucose permease (Fig.
3), whereas the
mutation Phe195Leu in JWL184-1 appears to be located
in putative
transmembrane helix 6 of the IIC domain (
5).
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TABLE 5.
Influence of various ptsG alleles on
ptsG induction as measured in LZ150 by the F'8::Tn
(ptsGop-lacZ) test systema
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FIG. 3.
Construction of carboxy-terminal deletions of
IICBGlc and testing of trans-activation of a
(ptsGop-lacZ) fusion. The functional domains of
IICBGlc are indicated as follows: the amino-terminal,
hydrophobic IICGlc domain is shown as a stippled box; the
carboxy-terminal, hydrophilic IIBGlc domain with the
phosphorylated Cys421 residue is shown as a hatched box; and the linker
with the conserved 382-KTPGRED-388 motif is shown as a thin line.
Deletion plasmids are shown as thick lines, and the associated numbers
refer to the first and the last original amino acids of the truncated
IICBGlc protein. Plasmids pJCH and pJBH (kindly provided by
B. Erni) encode six additional His residues. LZ150/F'8::Tn
(ptsGop-lacZ) harboring various plasmids was grown in
liquid minimal medium with 0.2% glycerol, 0.1% Casamino Acids, and 10 mg of ampicillin per liter. Glucose (0.2%) was added after one cell
division cycle where indicated (+Glc). Cells were harvested during
exponential growth. -Galactosidase activities are given as nanomoles
of protein per milligram per minute. The mean values of at least two
measurements are given.
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For a complementation analysis of the various
ptsG alleles,
the genes were cloned and expressed as
PstI/
HindIII fragments
in pTM30 (Fig.
1). The
IICB
Glc quantities expressed from these plasmid constructs
without induction
were as high as those in induced wild-type LJ110, as
indicated
by Western blot analysis with a polyclonal antiserum against
the
IIB
Glc domain (kindly provided by B. Erni). The
addition of at least
50 µM IPTG led to complete growth inhibition
(data not
shown).
The various
ptsG alleles were able to complement the
ptsG manXYZ double mutant LJ121 to a positive phenotype on
MacConkey-Glc
plates. However, only the mutated IICB
Glc
transporters expressed from pTM1, pTM32-3, and pTM727 produced
the
typical UmgC phenotype shown by their parent strains LZ1,
LJ132-3, and
LZ727 (Table
2) and were transdominant over
ptsG+, e.g., in LJ130 (data not shown). LJ121
harboring pTM184 (from
JWL184-1) became Glc
+ and
Man
+ but remained Glm

Atl
r
Rtl
r. These results were further confirmed by measuring the
pattern
of induction of

(
ptsGop-lacZ) expression in
LZ150/F'8::Tn

(
ptsGop-lacZ)
carrying the
various
ptsG alleles on pTM30. In the presence of
the
wild-type allele on pTM110, only glucose (2.5-fold) and perhaps
mannose
(1.7-fold) produced induction (Table
5). The mutated
transporters
expressed from pTM1 and pTM32-3 also caused inducibility
by
glucosamine, mannose, ribitol, mannitol, and fructose but not
by the
non-PTS carbohydrate arabinose, whereas cells harboring
pTM184 were
significantly induced by glucose (4-fold) and mannose
(2.6-fold).
Moreover, by expression of the original UmgC mutant
allele from pTM727,
constitutive

-galactosidase activity was
observed.
These results corroborate the hypothesis that altered
IICB
Glc from LZ1, LJ132-3, and HK727 alone is
responsible for the typical
UmgC phenotype and that no additional
mutation is involved. JWL184-1
carries a different type of
ptsG mutation. The substrate specificity
of this mutated
IICB
Glc is less relaxed than that of the transporters from
the other
mutants in that it results in only enhanced mannose
transport.
It is important to note that the two newly isolated
mutations
from LZ1 and LJ132-3 and the one from JWL184-1 differ from
the
HK727
ptsG allele in that they do not cause
transdominant constitutive
ptsG expression.
Rtl
r derivatives of LZ1 and LJ132-3 were isolated on
MacConkey agar plates with 1% ribitol. The majority (93%) of these
either
had
ptsG completely deleted or inactivated by
IS
10 insertions
or carried other mutations in
ptsG (Glc

Man

Glm

phenotype), as revealed by Southern hybridization and DNA sequencing
analysis (data not shown), confirming that IICB
Glc is the
only transport system for these carbohydrates in our isogenic
strains.
Others (4%) had a pleiotropic negative phenotype for
PTS
carbohydrates, resembling PtsI

and PtsH

mutants (data not shown). Inactivation of
ptsHI crr probably
occurred less frequently than inactivation of
ptsG because
of
the reduced viability of mutants with a lesion in general PTS
proteins.
Three Rtl
r derivatives, LZ22 and LZ23 from LZ1 and LJ333
from LJ132-3, with a Glc
+ Man

Glm

phenotype, were further characterized. DNA sequencing
analysis
of both
ptsG promoter-operator regions and reading
frames revealed
that in each case, the original mutation was still
present. However,
LZ22 showed one base-pair substitution, a T-to-G
transversion
(boldface), in the previously identified

10 region
(TT
TACTCT
to TT
GACTCT)
(
19,
37); this change most likely leads
to a strong
reduction in
ptsG expression. The
ptsG allele of
LZ23
carried an additional Thr246Ser amino acid exchange, whereas LJ333
had additional Ala82Pro and Val83Ile exchanges in IICB
Glc.
These additional mutations apparently reduce transport
activity.
Effects of plasmid-encoded and truncated IICBGlc on the
level of expression of a
(ptsGop-lacZ) fusion in a
(ptsG::cat) strain.
Deletion
of ptsG completely prevented the induction of a
(ptsGop-lacZ) fusion by the addition of glucose, even in
a Man+ strain, or any other tested carbohydrate (Table 4).
We previously reported (T. Zeppenfeld, C. Larisch, J. W. Lengeler,
and K. Jahreis, Abstr. Int. Meet. Fachgr. Biochem. GDCh and SF431, p.
68, 1999) that IICGlc expression in the presence of pJCH
alone (6), which encodes the IICGlc domain and
parts of the linker region (amino acids 1 to 386 plus six additional
His residues), resulted in strong constitutive
-galactosidase
activity (Fig. 3) in LZ150/F'8::Tn
(ptsGop-lacZ). The truncated protein was not capable of
transporting glucose; i.e., there was no complementation for glucose
uptake in the ptsG manXYZ double mutant LJ121 (data not
shown). Plumbridge (38) suggested that the
IIBGlc domain of PtsG may be responsible for generating the
inducing signal for ptsG expression. Therefore, we also
tested plasmid pJBH (6), which encodes the
IIBGlc domain (amino acids 390 to 477 plus six additional
His residues), for transactivation in this assay. Cells harboring pJBH
exhibited only slightly, if any, increased
-galactosidase activity
from the
(ptsGop-lacZ) fusion compared to the wild-type
control. These results correspond to the results obtained by Plumbridge
(38), who also observed only a very weak positive regulatory
effect of overproduction of the IIBGlc domain.
To further investigate what part of the IICB
Glc domain
might be responsible for the interaction with DgsA, we constructed
different
plasmids that encode proteins with defined carboxy-terminal
deletions
within the IIB
Glc domain (Fig.
3). The addition
of 50 µM IPTG to cells harboring
these plasmid constructs led to
immediate growth arrest, providing
some evidence for the production of
the truncated proteins. However,
attempts to detect these truncated
proteins by Western blot analysis
with a polyclonal antiserum against
the hydrophilic IIB
Glc domain failed. None of these
deletion plasmids could complement
for glucose uptake, e.g., in LJ121;
however, like pJBH, all pSTJ30
derivatives slightly increased

-galactosidase activity from a

(
ptsGop-lacZ) fusion in
LZ150, compared to the uninduced wild
type or the pTM30 control (Fig.
3
and Table
5). This increased

-galactosidase activity was independent of the addition of glucose.
Effects of mutated IICBGlc from LZ1 on the level of
expression of a
(ptsHp-lacZ) fusion.
Besides
regulating ptsG expression, DgsA is also involved in the
regulation of the pts operon (18, 38). To test
whether the ptsG1 allele has an effect on the
pts operon, a single-copy
(ptsHp-lacZ) operon
fusion was constructed. In wild-type ptsG+
strain LZ110, ptsH expression was induced about 3.3-fold by
the addition of glucose (Table 6), slightly by mannose and mannitol, but not at all by ribitol. In the ptsG1 mutant
LZ100, the induction pattern changed as described for the
(ptsGop-lacZ) fusion; i.e., the basal expression level
and the level of expression with glucose were increased, and the mutant
was clearly inducible by the addition of mannose, ribitol, and mannitol
(three- to fivefold). These changes, caused by alteration of the
IICBGlc transporter, are consistent with the hypothesis
that the substrate binding and/or transport activities of
IICBGlc directly modulate DgsA binding activity for all
DgsA-regulated operons (see Discussion).
 |
DISCUSSION |
In this study, we were able to show the mechanism of previously
described umuC mutations in E. coli K-12
(17). We provide evidence for the nonexistence of a
postulated distinct umgC regulatory gene for ptsG
expression and show that mutations causing the UmgC phenotype map
within ptsG. From the analysis of existing and newly isolated UmgC mutants emerges a novel regulatory model for
ptsG expression. It contains, besides classical regulatory
proteins, new elements of a glucose sensory system which correspond to
parts of the glucose PTS. Essential components of this new model have been described by Kimata et al. (19) and by Plumbridge
(38).
Central regulatory elements for the ptsG promoter-operator
are the repressor DgsA (also known as Mlc), the PTS-dependent
phosphorylation state of the IICBGlc complex, and the
global cAMP-CrpA activator. As has been shown by direct in vitro
binding assays, ptsG transcription is repressed by DgsA
binding to the operator and activated by cAMP-CrpA (19, 37).
In accordance with the new model, the expression of IICBGlc
cannot be induced above the basal level in a
cyaA
background, whereas it is constitutively high in a
dgsA
cyaA+ background (Table 4). No molecular inducer for
DgsA could be found in gel retardation assays which included glucose
and glucose-6-phosphate (18, 19, 37). The new model
postulates that IICBGlc is the glucose sensor responsible
for the induction of ptsG and that IICGlc occurs
in two conformations: one (IIC) with a low affinity and the other
(IIC*) with a high affinity for DgsA. IIC* prevents DgsA from binding
to the operator, either by competition for a limited amount of DgsA or
by allosterically reducing the affinity of DgsA for the operator. In
the absence of IICBGlc (in a
ptsG strain),
DgsA remains permanently bound to its operator, resulting in complete
repression of transcription. In the absence of the DgsA repressor (in a
dgsA strain), transcription becomes constitutive,
independent of the presence of IICBGlc but still dependent
on activation by cAMP-CrpA. We speculate that phosphorylated
IIBGlc either shifts the equilibrium toward the
low-affinity IICGlc conformation or that phosphorylated
IIBGlc binds to the IICGlc domain and thereby
excludes DgsA from binding. As predicted by the model, mutants with
defects in EI (ptsI), HPr (ptsH), or
IIAGlc (crr) all show constitutive expression of
ptsG, provided an intact or a mutated IICBGlc
complex is also present (Table 4). Thus,
ptsG
pts
mutants are noninducible. Final support for the model comes from the
observation that mutants expressing DgsA and the IICGlc
domain in the absence of the IIBGlc and/or
IIAGlc domain, i.e., the putative IIC* state, show
constitutive ptsG expression (Table 4 and Fig. 3). The
failure of the C-terminal deletion proteins of IICBGlc
encoded by the pSTJ30 deletion derivatives (Fig. 3) to generate (like
pJCH) enhanced constitutive ptsG expression might be caused by a permanent "locked-off" conformation of the IICGlc
domain or by reduced protein stability.
In contrast to the bgl and other operons controlled through
a PTS-dependent antitermination system (reviewed in reference 51), no antiterminator protein is involved in
ptsG control in E. coli, and there is no evidence
thus far for PTS-dependent phosphorylation or dephosphorylation of
either the repressor DgsA (18) or the global activator CrpA.
This observation again corroborates the new model in which the
PTS-dependent phosphorylation of IICBGlc acts through
alteration of the conformation of the inducer domain IICGlc
rather than through phosphotransfer to a cognate regulator. Based on
the new model, the UmgC and other ptsG mutations can now be understood in the following way.
(i) The fully constitutive allele ptsG727 from
the original HK727 mutant is a "locked-in" mutation which blocks
IIC permanently in the IIC* state (Table 5). Moreover, all mutated
ptsG alleles exhibit trans-dominance over the
wild-type ptsG allele. The corresponding E387G mutation
affects a linker motif postulated before as being essential for the
communication between IIBGlc and IICGlc
(5, 6, 24). In E. coli, there is no efficient
ATP-dependent glucosamine kinase which could generate the first
obligatory intermediate, glucosamine-6-phosphate. Furthermore,
glucosamine, normally transported and phosphorylated through
IIMan, is a noninducing and poor substrate for
IICBGlc. Therefore, selecting for Glm+
derivatives in a ManA
mutant selects for mutations
allowing a high level of expression of IICBGlc and
efficient phosphorylation of glucosamine by the glucose PTS. Thus, the
constitutive DgsA mutant (LJ138 in Table 2) remains unable to take up
and phosphorylate this substrate efficiently, while all UmgC-like
mutants accept this substrate fairly well. In contrast, other mutants
are able to grow on D-ribose and D-xylose via
the IICBGlc transporter but in the absence of concomitant
substrate phosphorylation (33). Such mutations always arise
in combination with a dgsA mutation, indicating that
substrates transported through IICBGlc by facilitated
diffusion do not induce ptsG due to the lack of dephosphorylation of IIBGlc during the process.
(ii) Besides the fully constitutive type of UmgC mutations represented
by ptsG727, there are semiconstitutive and
inducible UmgC mutations; i.e., they require the presence of a
substrate which is taken up and phosphorylated by the
IICBGlc transporter for full induction. They range from
efficiently accepting all four substrates and having a clearly
increased (
2-fold) basal induction level (S169F) to allowing only
glucosamine (P238L; data not shown) or mannose (F195L) and not
arabinitol and ribitol transport and phosphorylation. Similar UmgC
mutations, but in different amino acid residues (G176D, A288V, G320S,
and P384R), have been isolated by Notley-McRobb and Ferenci
(31). It is tempting to speculate that all of these
mutations lead to a relaxed substrate specificity of the
IICBGlc transporter. In accordance with this hypothesis,
this group isolated another class of UmgC-like mutants (V12G, V12F, and
G13C) with increased growth on glucosamine and enhanced growth on
glucose and mannose (31).
It is more difficult to explain how mutations (boldface) in the
hydrophilic linker motif (382-KTPGRED-388) cause changes in substrate specificity relative to mutations located in the
membrane-bound IICGlc domain, which is supposed to carry
central parts of the substrate binding and catalytic site. The function
of this interdomain linker in transport was systematically investigated
by alanine-scanning mutagenesis (20). Amino acid
substitutions T383A and G385A caused a strong reduction in
phosphotransfer activity. The linker perhaps plays an important role in
the conformational changes of the protein, precisely coupling the
interaction between the IIBGlc and the IICGlc
domains in the process of phosphotransfer to the substrate bound in
IICGlc (5, 6, 24). Substantial changes in the
conformation of a PTS transporter during the process of substrate
binding and phosphorylation have been reported for IICBAMtl
(28). Using isothermal titration calorimetry, these authors found that approximately 50 to 60 residues are involved in the binding
and phosphorylation of the substrate mannitol and the interaction
between IICMtl and IIBMtl. This interaction
seems to be necessary for phosphotransfer from IIBMtl to
the IICMtl-bound substrate and the release of the
phosphorylated substrate into the cytoplasm. The fact that the E387G
mutant exhibits altered substrate specificity, enhanced transport
activity, and a locked-in conformation for the interaction with DgsA
seems to indicate that substrate binding, dephosphorylation of
IIBGlc, and a change into the inducing conformation (IIC*)
are related processes. The observation that the S169F mutation caused
an increased level of basal expression also fits this hypothesis.
The unexpected finding that our laboratory strain JWL184-1 carries a
mutation in ptsG indicates that other laboratory strains of
E. coli K-12 also may carry unidentified ptsG
mutations. Plumbridge (38), for example, reported that in
her JM101 copy, a
(ptsGop-lacZ) fusion was inducible by
glucose, N-acetylglucosamine, mannitol, trehalose and, to a
lesser extent, glucosamine and mannose. This finding is in contrast to
our finding that the E. coli K-12 reference strain W3110 and
its isogenic derivatives can be induced only by glucose.
Characteristically, older transport studies had indicated D-glucose,
MG, and 5-thio-D-glucoside as the
only substrates for the IICBGlc transporter
(39).
An interesting question is how DgsA could be titrated by
IICBGlc if the dgsA gene itself is
autoregulated. DgsA binding sites cloned on low-copy-number plasmids
indeed do not titrate DgsA and therefore do not lead to constitutive
expression of DgsA-controlled genes (unpublished results). Cloning of
the same DgsA binding sites on a multicopy-number vector, however, led
to titration of DgsA and to constitutive
(ptsGop-lacZ)
expression (38). This result indicates that dgsA
expression is rather limiting and that titration of DgsA by
IICBGlc present at about 2,000 molecules per cell might be possible.
The results presented here extend and contribute to understanding of
the function of IICBGlc not only in glucose transport but
also in glucose sensing and response. In this process, the transport of
glucose triggers a dual-signal transduction pathway. One branch
consists of the glucose-dependent modulation of the level of
phosphorylation of IIAGlc. Unphosphorylated
IIAGlc binds to and reversibly inhibits non-PTS
transporters, e.g., for lactose, maltose, or glycerol (inducer
exclusion); in its phosphorylated form, IIAGlc activates
adenylate cyclase to synthesize cAMP (reviewed in reference 22). In the second branch, the level of
phosphorylation of IICBGlc directly modulates the activity
of the anticatabolite repressor DgsA. DgsA, in interaction with
cAMP-CrpA, can be used by E. coli to precisely regulate
carbon catabolite gene expression.
 |
ACKNOWLEDGMENTS |
We thank H. L. Kornberg, B. Erni, W. Boos, and K. Schmid for
helpful discussions and generous gifts of strains, plasmids, and
antiserum against IICBGlc; T. Ferenci and J. Plumbridge for
helpful discussions of unpublished information; M. Berlyn (E. coli Genetic Stock Center, New Haven, Conn.) and P. Henderson for
donating strains; and S. Tebbe for expert technical help.
We thank the Deutsche Forschungsgemeinschaft for financial support
through SFB171 TP C4 and SFB431 TP K2.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Arbeitsgruppe
Genetik, Fachbereich Biologie/Chemie, Universität
Osnabrück, D-49069 Osnabrück, Germany. Phone:
49-541-969-2288. Fax: 49-541-969-2293. E-mail:
Jahreis{at}Biologie.Uni-Osnabrueck.de.
 |
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Journal of Bacteriology, August 2000, p. 4443-4452, Vol. 182, No. 16
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