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Journal of Bacteriology, September 2000, p. 5046-5051, Vol. 182, No. 18
0021-9193/00/$04.00+0
Copyright © 2000, American Society for Microbiology. All rights reserved.
A Hydrogen Peroxide-Forming NADH Oxidase That Functions as an
Alkyl Hydroperoxide Reductase in Amphibacillus
xylanus
Youichi
Niimura,1,*
Yoshitaka
Nishiyama,1
Daisuke
Saito,1
Hirokazu
Tsuji,1
Makoto
Hidaka,2
Tatsurou
Miyaji,3
Toshiro
Watanabe,3 and
Vincent
Massey4
Department of Bio-Science, Tokyo University
of Agriculture, Setagaya-ku, Tokyo 156-85027,1
Department of Biotechnology, The University of Tokyo, Tokyo
113,2 and Department of Food Science and
Technology, Tokyo University of Agriculture, Abashiri-shi,
Hokkaido 099-2493,3 Japan, and
Department of Biological Chemistry, University of Michigan
Medical School, Ann Arbor, Michigan 48109-06064
Received 6 March 2000/Accepted 6 June 2000
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ABSTRACT |
The Amphibacillus xylanus NADH oxidase, which catalyzes
the reduction of oxygen to hydrogen peroxide with
-NADH, can also reduce hydrogen peroxide to water in the presence of free flavin adenine dinucleotide (FAD) or the small disulfide-containing
Salmonella enterica AhpC protein. The enzyme has two
disulfide bonds, Cys128-Cys131 and Cys337-Cys340, which
can act as redox centers in addition to the enzyme-bound FAD (K. Ohnishi, Y. Niimura, M. Hidaka, H. Masaki, H. Suzuki, T. Uozumi, and T. Nishino, J. Biol. Chem. 270:5812-5817, 1995). The NADH-FAD
reductase activity was directly dependent on the FAD concentration,
with a second-order rate constant of approximately 2.0 × 106 M
1 s
1. Rapid-reaction
studies showed that the reduction of free flavin occurred through
enzyme-bound FAD, which was reduced by NADH. The peroxidase activity of
NADH oxidase in the presence of FAD resulted from reduction of peroxide
by free FADH2 reduced via enzyme-bound FAD. This peroxidase
activity was markedly decreased in the presence of oxygen, since the
free FADH2 is easily oxidized by oxygen, indicating that
this enzyme system is unlikely to be functional in aerobic growing
cells. The A. xylanus ahpC gene was cloned and
overexpressed in Escherichia coli. When the NADH oxidase
was coupled with A. xylanus AhpC, the peroxidase activity was not inhibited by oxygen. The Vmax values
for hydrogen peroxide and cumene hydroperoxide reduction were
both approximately 150 s
1. The Km
values for hydrogen peroxide and cumene hydroperoxide were too
low to allow accurate determination of their values. Both AhpC and NADH
oxidase were induced under aerobic conditions, a clear indication that
these proteins are involved in the removal of peroxides under aerobic
growing conditions.
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INTRODUCTION |
We have reported previously on a new
group of facultatively anaerobic bacteria isolated from
alkaline compost (17). Since the bacteria have unique
phenotypic and chemotaxonomic characteristics (18), as
well as bioenergetic properties (13), we named one of the
isolate Amphibacillus xylanus (18). A. xylanus, which lacks a respiratory system and heme proteins,
including catalase, grows well and has the same growth rate and cell
yield under strictly anaerobic and aerobic conditions (18).
This is due to the presence of anaerobic and aerobic pathways producing
similar amounts of ATP (19). We purified NADH oxidase from
aerobically grown A. xylanus (20) and found that
hydrogen peroxide is formed during the reaction of the NADH oxidase. We
have also found that the enzyme reduces hydrogen peroxide in the
presence of additional free flavin adenine dinucleotide (FAD); this may
be of physiological relevance because of the presence of 13 µM free
FAD in aerobically growing cells. Such behavior indicates that the
A. xylanus NADH oxidase has unique functional properties
that are different from those of other known NADH oxidases (8, 10,
12, 27, 31-33).
The amino acid sequence of A. xylanus NADH oxidase exhibits
up to 51.2% identity to the alkyl hydroperoxide reductase F-52a flavoprotein component (AhpF) from Salmonella enterica
(36), but the ability of the latter to reduce hydrogen
peroxide was not reported (11). We have shown that both
enzymes reduce not only alkyl hydroperoxides but also hydrogen peroxide
in the presence of the 22-kDa protein component (AhpC) of the alkyl
hydroperoxide reductase from Salmonella enterica, and the
turnover numbers of the reactions catalyzed by the NADH oxidase are
extremely high compared with those of known peroxide-reducing enzymes
(21). Complete reduction of the NADH oxidase by dithionite
required 6 electron equivalents/mol of enzyme-bound flavin (25,
26). Such behavior indicated the presence of redox centers in
addition to the FAD, and these were shown to be two disulfides,
Cys128-Cys131 and Cys337-Cys340. To provide information about the
relationship between such high turnover numbers and the three redox
centers of the enzyme, the reductive half-reactions of the wild-type
and the mutant (C337S/C340S) NADH oxidase were investigated and have been reported in a previous publication (22).
Hydrogen peroxide is presumed to be accumulated in aerobically growing
cells of A. xylanus, which lack catalase and a respiratory chain (18), because the NADH oxidase should regenerate
NAD+ from NADH formed in the aerobic pathway and produce
hydrogen peroxide from oxygen. The ability to get rid of hydrogen
peroxide must be high for the cells to be able to survive under aerobic conditions. In the presence of free FAD or the AhpC protein, the NADH
oxidase shows scavenging activity for hydrogen peroxide (21, 23). In this study, we investigated these kinds of peroxide reductase activities, and we discuss them below in terms of their relevance to the aerobic metabolism of the bacteria.
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MATERIALS AND METHODS |
Bacterial growth.
A. xylanus Ep01 was grown
aerobically at 39°C in glucose-containing medium as described
previously (18). The cells were harvested by centrifugation
after 7 h of cultivation (early stationary phase), washed with 50 mM sodium phosphate buffer (pH 7.0), and then stored at
80°C until use.
Enzymes and materials.
8-Dimethylaminoriboflavin
(14) was kindly supplied by Kunio Matsui (Osaka
International University for Women) and Sabu Kasai (Osaka City
University) and converted to the FAD level with the FAD synthase
complex from Brevibacterium ammoniagenes (35). 6-Hydroxy-riboflavin was a gift from Sandro Ghisla (University of
Konstanz) and was converted similarly to FAD. Recombinant NADH oxidase
and its mutants (C337S/C340S) were purified as described previously
(26). Both the NADH oxidase and ahpC genes were
cloned into the pTTQ18 vector and expressed in Escherichia
coli JM109 by addition of 1 mM
isopropyl-
-D-thiogalactopyranoside (IPTG) (final
concentration). Recombinant AhpC and NADH oxidase were purified in a
manner similar to that used for recombinant NADH oxidase, since AhpC
and NADH oxidase were separated by the first step of purification, a
column of DE53 (2.6 by 33 cm) (25). The pools of the
fractions containing AhpC and NADH oxidase after the DE53 purification
were individually subjected to the next purification step as described
previously (25).
Stopped-flow absorbance spectrophotometry.
The stopped-flow
apparatus has been described previously (22). Anaerobiosis
of the flow system was achieved by overnight equilibration with an
anaerobic solution of protocatechuate-3,4-dioxygenase (a generous gift
of David P. Ballou, University of Michigan). Rate constants were
obtained by exponential fitting using the software Program A (developed
by C.-J. Chiu, R. Chung, J. Dinverno, and D. P. Ballou),
which permits the analysis of experimental data by exponential fitting
based on the Marquardt algorithm (3).
Anaerobiosis for flavin reductase activity.
The enzyme
solution (10 ml) containing 50 mM sodium phosphate buffer (pH 7.0), 0.5 mM EDTA, and enzyme (in the concentration range from 0.4 to 1.0 µM)
was loaded into a tonometer. After anaerobiosis was established by
repeated evacuation and equilibration with oxygen-free argon and
equilibration at 25°C, the reaction was started by mixing the enzyme
solution in the stopped-flow spectrophotometer with 20 to 200 µM FAD
solutions containing different concentrations of NADH and monitored at
350 nm (NADH oxidation) and 450 nm (flavin reduction). The FAD
solutions, containing 50 mM sodium phosphate buffer (pH 7.0), 0.5 mM
EDTA, and 5 to 300 µM NADH (the concentrations were halved after
mixing in the stopped-flow spectrophotometer), were made anaerobic by
bubbling with oxygen-free argon at 25°C.
Anaerobiosis for reaction of reduced NADH oxidase with
6-hydroxy-FAD and 8-dimethylamino-FAD.
To 10 ml of ca. 20 µM
NADH oxidase in the main compartment of a tonometer were added 233 µM
xanthine, 2 µM benzyl viologen, and 2 µM methyl viologen. After
anaerobiosis, a catalytic amount of milk xanthine oxidase was added
from the side arm and the reduction was carried out at room
temperature, taking more than 1 to 2 h. The reaction was started
by mixing the enzyme solution with different concentrations of
6-hydroxy-FAD or 8-dimethylamino-FAD. The reaction with 6-hydroxy-FAD
was monitored at 424 nm, and that with 8-dimethylamino-FAD was
monitored at 520 nm.
NADH-dependent oxidase and peroxidase activities.
Oxygen
consumption was determined polarographically at 25°C as described
previously (23). The oxidase activity of NADH oxidase was
measured spectrophotometrically at 340 nm and 25°C as described previously (25). Turnover studies of hydrogen peroxide or
alkyl hydroperoxide reductase were carried out with a stopped-flow
spectrophotometer (Hi-tech SF-61). We found that in the presence of
Amphibacillus AhpC, the peroxide reductase activities were
the same in air-saturated solution as those determined anaerobically
(data not shown); therefore, we did not use an anaerobic stopped-flow
assay system for the routine measurement of peroxide reductase
activity. The enzyme-AhpC mixture (10 ml), containing 50 mM sodium
phosphate buffer (pH 7.0), 0.5 mM EDTA, 300 mM ammonium sulfate, 1.12 µM enzyme, and 70.4 µM AhpC, was loaded into a tonometer. After
equilibration at 25°C, the reaction was started by mixing with
different NADH-peroxide mixtures, and the reaction was monitored at 340 nm. The NADH-peroxide mixtures contained 50 mM sodium phosphate buffer
(pH 7.0), 0.5 mM EDTA, 0.1 to 1 mM hydrogen peroxide or cumene
hydroperoxide, and 30 to 150 µM NADH at 25°C.
SOD activity and various peroxidase activities.
Superoxide
dismutase (SOD) activity was determined by the ferricytochrome
c-xanthine oxidase method (2). One enzyme unit of
SOD was defined as that resulting in 50% inhibition of the detection
reaction under the assay conditions. Each peroxidase activity was
measured at both pH 7.0 (50 mM sodium phosphate buffer) and pH 8.5 (50 mM Tris buffer), because the internal pH of Amphibacillus, when incubated in the growth medium at pH 8.5 and 9.5, was 7.7 and 8.5, respectively. Other assays of peroxidases were performed at 39.5°C by
methods used for: fatty acid peroxidase (4), cytochrome peroxidase (37), peroxidase (30), iodide
peroxidase (1), glutathione peroxidase (16),
chloride peroxidase (15), L-ascorbate peroxidase
(34), and NADH peroxidase (23, 28).
Western blotting (immunoblotting).
Rabbit polyclonal
anti-AhpC antibody and anti-NADH oxidase antibody from A. xylanus were prepared. Cell extracts from anaerobically and
aerobically grown cultures were subjected to sodium dodecyl sulfate
(SDS)-polyacrylamide gel electrophoresis and then transferred to a
polyvinylidene difluoride membrane, which was soaked for 1 h at
room temperature in blocking buffer (0.299 g of
NaH2PO4 · 2H2O, 3.04 g
of Na2HPO4 · 12H2O, and
8.77 g of NaCl in 1 liter [pH 7.2]) containing 5% (wt/vol) skim
milk. The polyvinylidene difluoride membrane was incubated for 1 h
at room temperature with anti-AhpC antibody in blocking buffer
containing 5% (wt/vol) skim milk, washed five times with blocking
buffer, incubated for 1 h with donkey anti-rabbit immunoglobulin G
antibody conjugated with horseradish peroxidase, washed five times with
blocking buffer, and then developed with a solution containing 50 mM
Tris-HCl (pH 7.4), 0.6 mg of 3,3-diaminobenzidine tetrahydrochloride in
1 ml, 0.03% (wt/vol) cobalt chloride, and 0.03% (vol/vol) hydrogen peroxide.
Nucleotide sequence accession number.
The ahpC
gene sequence reported has been entered into the DNA Data Bank of Japan
under accession number AB018435.
 |
RESULTS |
Cloning, and expression of the ahpC gene from A. xylanus.
A partial open reading frame (ORF) homologous to the
S. enterica ahpC structural gene has been found upstream of
the A. xylanus NADH oxidase structural gene (5).
The fragment was contained in a 9-kb EcoRI fragment, which
we had isolated previously from A. xylanus Ep01 chromosomal
DNA (20), and was cloned into plasmid pUC119 to yield pPU9.
Nucleotide sequencing of the fragment revealed an ORF, which is
immediately preceded by a typical ribosomal binding site, GGAGG
(Shine-Dalgarno sequence). The ORF encodes a protein homologous to the
Salmonella AhpC (64.4% [data not shown]). The two ORFs
encoding AhpC and NADH oxidase are separated by 17 bp and would be
transcribed in the same direction. To investigate the possibility that
two ORFs are cotranscribed, we cloned the fragment containing the two
ORFs into the expression vector pTTQ18 as follows. The
EcoRI-BamHI fragment from pPU9 was partially
digested with SspI to release a 2.5-kb fragment. This
fragment was cloned into pTTQ18. The resultant plasmid, pAHNO2.5,
contained the complete AhpC and NADH oxidase gene downstream from the
tac promoter. The plasmid was transformed into E. coli
JM109, which gave consistent IPTG-induced expression of AhpC and NADH
oxidase, confirmed by SDS-polyacrylamide gel electrophoresis, which
revealed 21- and 56-kDa bands after IPTG induction (data not shown).
The above result indicates that both proteins are synthesized from a
single transcript.
Purification of recombinant and native AhpC.
The purification
of recombinant AhpC is based on a method presented in a previous report
(25). The average purification yield from 1 liter of
culture broth of E. coli(pAHNO2.5) was 7 mg.
SDS-polyacrylamide gel electrophoresis analysis of recombinant AhpC
revealed a molecular weight of 21,000 (data not shown), which is
consistent with the calculated value of 20,774. However, under nonreducing conditions, the observed molecular weight was 40,000, corresponding to the molecular size of a dimer (data not shown). This
dimerization was also observed in Salmonella AhpC
(29) and yeast thiol-specific antioxidant (6),
which showed 64.4 and 39.3% homology, respectively, to
Amphibacillus AhpC. AhpC was also partially purified from
aerobically growing cells of A. xylanus Ep01 by the same
purification method as that used for recombinant AhpC. The
N-terminal amino acid sequence of AhpC from Amphibacillus was determined to be SLIGTEVQPFRA, which
is identical to that of recombinant AhpC and indicates that the
initiating methionine of AhpC is removed to give mature AhpC, starting
with the second amino acid, Ser. Removal of the initiating methionine was also observed in Salmonella AhpC (29).
Effect of free FAD or AhpC on oxygen consumption and hydrogen
peroxide reductase activity.
Since the NADH oxidase consumes
oxygen to produce hydrogen peroxide, the addition of catalase at
the end of the reaction results in the release of oxygen
equivalent to half of that consumed (20). As shown in Fig.
1A, such an effect is independent of
whether catalase is added during or at the end of the reaction. In the presence of free FAD, the rate of oxygen consumption was enhanced considerably at all experimentally obtainable concentrations of oxygen
(23). When catalase was added after complete consumption of
oxygen, there was no release of oxygen; however, when it was added
during the course of the reaction, there was partial release of oxygen
(Fig. 1B). In contrast, when the auxiliary protein, AhpC, which binds
with the flavoprotein to constitute a highly reactive alkyl
hydroperoxide reductase was added, catalase had no effect regardless of
the time of its addition (Fig. 1C). The effect of FAD is due to the
ability of NADH oxidase to function as a flavin reductase and to the
ability of reduced flavin to reduce hydrogen peroxide nonenzymatically,
as shown in subsequent sections.

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FIG. 1.
Oxygen consumption during the catalysis of A. xylanus NADH oxidase in the presence of FAD or AhpC. The
reaction mixture (2.5 ml) contained 50 mM sodium phosphate buffer (pH
7.0), 0.5 mM EDTA, 0.02% bovine serum albumin, 2% ammonium sulfate,
and 600 µM NADH, with 50 µM FAD (B), 30 µM AhpC (C), or neither
(A). The reaction was started at 25°C by the addition of 52.8 µg
(A), 5.3 µg (B), or 105.6 µg (C) of NADH oxidase, as indicated by
arrows a. During oxygen consumption, 60 µg of catalase was added, as
indicated by arrows b.
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Flavin reductase activity of NADH oxidase.
The NADH oxidase
was found to be very active as a FAD reductase under anaerobic
conditions. The steady-state kinetics of this reaction were determined
by measuring the initial rates of FAD reduction at various
concentrations of NADH and with a catalytic concentration of enzyme (in
the range from 0.4 to 1.0 µM), utilizing the ability of the
stopped-flow spectrophotometer to operate under anaerobic
conditions. The results of such a study are shown in Fig.
2. From a secondary plot of the primary
intercepts against the reciprocal FAD concentration (Fig. 2 inset),
kcat is estimated to be ~200 s
1,
with Km values of ~100 µM, for both NADH and
FAD. The value of kcat is the same as that for
reduction of the enzyme-bound flavin by NADH (22) and
implies that the reaction of the reduced enzyme with free FAD is
approximately second order:
For such a kinetic mechanism,
kcat =
k3,
Km (NADH) = (
k2 +
k3)/
k1, and
Km (FAD) =
k3/
k5. In previous
studies (
22),
k3 has
been determined
to be 200 s
1 and
Kd for NADH
binding has been determined to be 1.2 × 10
4 M. The
value for
Km (FAD) of ~100 µM would require
a second-order
rate constant (
k5) of ~2 × 10
6 M
1 s
1 for reoxidation of
the reduced enzyme by FAD. Reaction traces
of FAD reduction in the
presence of high concentrations of NADH
in fact show a single
exponential decay, implying a direct relationship
between catalytic
turnover and residual FAD concentration, and
yield a second-order rate
constant of 1.6 × 10
6 M
1
s
1. We made use of the different spectral characteristics
of 6-OH-FAD
(
max = 424 nm) and 8-dimethylamino-FAD
(
max = 505 nm) compared
to that of NADH oxidase
(
max = 448 nm) to measure directly their
reaction
rate constants with reduced NADH oxidase. Second-order
rate constants
at pH 7.0 and 25°C of 1.9 × 10
6 and 1.7 × 10
6 M
1 s
1 were obtained for the
reactions with 6-OH-FAD and 8-dimethylamino-FAD,
respectively (results
not shown).

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FIG. 2.
Steady-state kinetics of NADH-FAD reductase activity.
Initial rates of reduction of FAD were monitored at 450 nm on mixing
1.0 µM NADH oxidase with the concentrations of NADH and FAD shown in
the figure in a stopped-flow spectrophotometer under anaerobic
conditions (the concentrations given are those after mixing). The
enzyme was made anaerobic and stored under argon in a tonometer, and
the NADH-FAD mixtures were made anaerobic by bubbling for 15 min with
argon before introduction into the stopped-flow apparatus. The reaction
conditions were 0.05 M sodium phosphate (pH 7.0), 0.5 mM EDTA, and
25°C.
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Flavin reductase activity of C337S/C340S NADH oxidase.
The
mutant enzyme also catalyzed rapid NADH-FAD reductase activity under
anaerobic conditions. Although a complete steady-state study like that
of Fig. 4 was not carried out, a Vmax value of 42 s
1 and an apparent Km (NADH) of
25 µM were obtained in the presence of 25 µM FAD. These values are
similar to those obtained with wild-type enzyme under similar
conditions (see the results with 22.6 µM FAD in Fig. 2). Thus,
although reducing equivalents from FADH2 are passed rapidly
to the C337-C340 disulfide of the native enzyme (22), it is
clear that the flavin moiety alone is required for the FAD reductase activity.
Reaction of FADH2 with hydrogen peroxide.
From the
results presented in Fig. 1B, it is clear that in the presence of FAD,
hydrogen peroxide accumulates as an intermediate and is only slowly
removed in a subsequent step. This is probably due to the slow
reduction of H2O2 by FADH2 in a
nonenzymatic reaction. We determined by stopped-flow spectrophotometry
that under our standard experimental conditions, i.e., pH 7.0 and
25°C, H2O2 reoxidized FADH2
anaerobically with a rate constant of 21 M
1
s
1 (data not shown). This value is consistent with the
slow reoxidation of reduced flavin by H2O2
reported by Dixon (9).
Stoichiometry of NADH consumption in the presence of FAD and
oxygen.
Under anaerobic conditions the catalytic NADH-FAD
reductase reaction resulted in the consumption of NADH in
stoichiometric amounts with respect to the amount of FAD reduced.
However, in the presence of excess NADH, limiting concentrations
of oxygen, and catalytic amounts of FAD, approximately 2 equivalents of NADH were consumed for reduction of 1 equivalent of
oxygen. Thus, in a solution equilibrated with 5% O2
(O2 concentration, 61 µM) containing 10 µM FAD, 310 µM NADH, and 1.2 µM NADH oxidase, a total of 145 µM NADH was
consumed (half in the first 15 s and the remainder over a period
of 10 min) as estimated by the reduction in absorbance at 340 nm.
After accounting for the 24 µM NADH required for the reduction of FAD
and the enzyme, it can be calculated that almost exactly 2 equivalents
of NADH are consumed for each equivalent of oxygen initially present.
It is of course long established that the reaction of reduced flavin
with O2 gives rise to a stoichiometric amount of
H2O2 and that the latter can be further reduced
to H2O by reduced flavin (9). Therefore, the
NADH-peroxide reductase reaction catalyzed by the NADH oxidase, with
the fast phase represented by the top section and the slower phase by
the lower section, can be formulated as in Fig.
3.
Alkyl hydroperoxide reductase activity in the presence of AhpC from
A. xylanus.
The ability of NADH oxidase to catalyze the
reduction of hydrogen peroxide or alkyl hydroperoxide in the
presence of Amphibacillus AhpC was tested using a
stopped-flow assay system that allowed continuous monitoring of
NADH oxidation in the presence of peroxide substrates such as hydrogen
peroxide or cumene hydroperoxide. The activity was found to be markedly
dependent on the ionic strength, similar to the result previously
found with Salmonella AhpC (21). The data
described below were obtained in the presence of optimal concentrations
of ammonium sulfate (300 mM). NADH oxidase is able to reduce both
hydrogen peroxide and cumene hydroperoxide to give similar turnover
numbers in the presence of Amphibacillus AhpC to those found
previously with Salmonella AhpC. The
Vmax values for hydrogen peroxide and cumene
hydroperoxide were both approximately 150 s
1,
extrapolated to saturating Amphibacillus AhpC concentration (results not shown). These Vmax values are
almost the same as the values in the presence of Salmonella
AhpC (21). The Km values for
Amphibacillus AhpC in the reaction with hydrogen peroxide or
cumene hydroperoxide were 8.9 and 10.0 µM, respectively and were
similar in magnitude to those for Salmonella AhpC. On the other hand, the Km values for hydrogen peroxide,
cumene hydroperoxide, and NADH were too low to allow an accurate
determination of the values by the assay system used; the rates were
the same with hydrogen peroxide or cumene hydroperoxide in the range
from 0.1 to 1 mM and with NADH in the range from 37.5 to 150 µM.
Activity of SOD and the other peroxidases in Cell-Free Extracts of
Amphibacillus.
Strong SOD activity was found in cell
extracts of Amphibacillus. The activity was induced markedly
under aerobic conditions, i.e., 45.8 U/mg of protein under aerobic
conditions and 4.50 U/mg of protein under anaerobic conditions.
Hydrogen peroxide formed by this reaction must be removed in the living
cells of Amphibacillus. The possibility was considered that
some peroxidase might be induced in aerobic growing cells, because the
bacterium lacks catalase. Several kinds of peroxidases have been
purified and characterized from bacteria or mammalian sources (1,
4, 15, 16, 28, 34, 37). Peroxidase activities were tested as
previously described (1, 4, 15, 16, 23, 28, 30, 34, 37), but
no peroxidase activity except NADH:hydrogen peroxide reductase
depending on free FAD or AhpC was detected in cell free extracts of
Amphibacillus. These two peroxidase activities of purified
NADH oxidase have been reported in previous papers (21, 23).
Proposals for their physiological role in aerobic metabolism of
Amphibacillus will be considered in Discussion.
Induction of NADH oxidase and AhpC by oxygen.
Immunoblot
analysis revealed that cell extracts reacted with antibodies against
NADH oxidase from A. xylanus (results not shown). The NADH
oxidase-like protein was induced markedly under aerobic conditions but
not under anaerobic conditions. Immunoblot analysis using antibodies
against AhpC from A. xylanus also show that the AhpC-like
protein was induced significantly under aerobic conditions, indicating
that both proteins are actually involved in aerobic metabolism of
Amphibacillus (see Discussion for further detail).
 |
DISCUSSION |
Although A. xylanus can grow well in aerobic media, no
catalase or known peroxidase activities could be observed in the cells. In a previous study, we found peroxidase activity in the presence of
free FAD and showed that 13 µM free FAD is actually contained in the
cells of A. xylanus (25). The peroxidase activity
results from reduction of peroxide by FADH2 formed from the
flavin reductase activity of the enzyme. The peroxidase activity
exhibited in the presence of FAD is, however, unlikely to be of much
physiological significance, since FADH2 is required for the
reduction of peroxide but this reaction is much slower than the
competing reaction of FADH2 with oxygen to produce
H2O2. In contrast, the peroxidase activity in
the presence of AhpC is not affected by oxygen. A partial ORF
homologous to the Salmonella AhpC structural gene was
previously found upstream of the Amphibacillus NADH oxidase structural gene (5). In fact, AhpC exists in the cells of
A. xylanus, and both AhpC and NADH oxidase are induced
markedly under aerobic conditions. Thus, it seems clear that these
proteins are involved in removing peroxides formed in aerobic metabolism.
High SOD activity was also observed in aerobically growing cells of
A. xylanus. Hydrogen peroxide is formed by the SOD reaction, as well as by other oxidase reactions. The scavenging activity for
hydrogen peroxide produced by such reactions should be high to permit
cells to survive under aerobic conditions. In the presence of
saturating concentrations of AhpC, the Vmax
values for reduction of hydrogen peroxide and alkyl hydroperoxide are
similar to the rate constant for the reduction of the enzyme-bound FAD
by NADH in the NADH oxidase, suggesting that these values may be
limited by the reduction rate of the flavoprotein component. The
Km values for hydrogen peroxide and cumene
hydroperoxide are too low to be determined by the analytical method
employed. The yeast thiol-specific antioxidant (6) which is
39.3% homologous to Amphibacillus AhpC was renamed
thioredoxin peroxidase because it reduced hydrogen peroxide and alkyl
hydroperoxides with thioredoxin, thioredoxin reductase, and NADPH
(7). These activities, however, are low in comparison to
that of the NADH oxidase-AhpC system of Amphibacillus. The
high turnover numbers and low Km values of the
Amphibacillus enzyme system are unusual for known
peroxide-reducing enzymes and provide a rationale for the vigorous
aerobic growth of Amphibacillus, despite its lack of both
catalase and conventional peroxidases.
In our early physiological study of A. xylanus, large
amounts of hydrogen peroxide were presumed to be produced in
aerobically growing cells, because the NADH oxidase must regenerate NAD
from NADH formed in the aerobic pathway of A. xylanus, which
lacks a conventional respiratory chain (see Fig. 4). Hydrogen peroxide must be formed as an intermediate but must be removed by the NADH oxidase-AhpC system as fast as it is formed. Based on a metabolic study
of A. xylanus, we proposed the presence of anaerobic and aerobic pathways producing similar amounts of ATP (Fig.
4) (21). While NADH formed
from NAD+ in the glycolytic pathway is reoxidized by the
functioning of NAD-linked aldehyde dehydrogenase and NAD-linked alcohol
dehydrogenase in anaerobic metabolism, NADH produced both from the
glycolytic pathway and by pyruvate metabolism of the aerobic pathway
(19) is oxidized to NAD during the reduction of oxygen to
water by the NADH oxidase-AhpC system (Fig. 4), which provides
metabolic balance in the aerobic pathway.

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FIG. 4.
Proposed pathway for pyruvate metabolism in
A. xylanus. The NADH oxidase-AhpC system is enclosed
by the solid rectangle. CoA, coenzyme A.
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Previously, we found that the Salmonella alkyl hydroperoxide
reductase system containing AhpC catalyzes the reduction of hydrogen peroxide with a high turnover number (21). However, its NADH oxidase activity is very low compared to that of
Amphibacillus NADH oxidase, indicating that the
Salmonella enzyme system mainly catalyzes the reduction of
hydrogen peroxide. Because Salmonella has a respiratory
chain, providing an effective oxidizing system for NADH, the
Salmonella enzyme probably functions mainly in the reduction
of peroxides rather than in the regeneration of NAD. Sporolactobacillus inulinus, lacking a respiratory system,
catalase, and peroxidases, grows well under both anaerobic and aerobic
conditions, as does A. xylanus. In the presence of AhpC,
Sporolactobacillus NADH oxidase also shows high turnover
numbers and low Km values for peroxide
(24). Therefore, the NADH oxidase-AhpC system probably plays
an important role not only in removing peroxides but also as an
NAD-regenerating system in bacteria, which lack both a respiratory chain and conventional hydrogen peroxide-removing enzymes.
 |
ACKNOWLEDGMENTS |
We thank Kunio Matsui (Osaka International University for
Women) and Sabu Kasai (Osaka City University) for
8-dimethylamino-riboflavin and Sandro Ghisla (University of Konstanz)
for 6-hydroxyriboflavin.
This work was supported in part by a grant from the U.S. Public Health
Service (GM-11106) to V.M.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: The Department
of Bio-Science, Tokyo University of Agriculture, 1-1-1 Setagaya-ku, Tokyo 156-85027, Japan. Phone: 03-5477-2761. Fax: 03-5477-2668. E-mail:
niimura{at}nodai.ac.jp.
 |
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