Department of Biochemistry and Biophysics,
Texas A&M University, College Station, Texas
77843-21281; Institute of
Microbiology and Genetics, Vienna Biocenter, University of Vienna,
1030 Vienna, Austria2; and VAGLAHS,
Lipid Research, Los Angeles, California 900733
Holins are integral membrane proteins that control the access of
phage-encoded muralytic enzymes, or endolysins, to the cell wall by the
sudden formation of an uncharacterized homo-oligomeric lesion, or hole,
in the membrane, at a precisely defined time. The timing of
-infected cell lysis depends solely on the 107 codon S
gene, which encodes two proteins, S105 and S107, which are the holin
and holin inhibitor, respectively. Here we report the results of
biochemical and genetic studies on the interaction between the holin
and the holin inhibitor. A unique cysteine at position 51, in the
middle of the second transmembrane domain, is shown to cause the
formation of disulfide-linked dimers during detergent membrane
extraction. Forced oxidation of membranes containing S molecules also
results in the formation of covalently linked dimers. This technique is
used to demonstrate efficient dimeric interactions between S105 and
S107. These results, coupled with the previous finding that the timing
of lysis depends on the excess of the amount of S105 over S107, suggest
a model in which the inhibitor functions by titrating out the effector
in a stoichiometric fashion. This provides a basis for understanding
two evolutionary advantages provided by the inhibitor system, in which
the production of the inhibitor not only causes a delay in the timing
of lysis, allowing the assembly of more virions, but also increases
effective hole formation after triggering.
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INTRODUCTION |
Bacteriophage
has four lysis
genes S, R, Rz, and Rz1
(8, 19, 25, 26, 40). Only S and R are absolutely required for host cell lysis under standard laboratory conditions (14, 15). Rz and Rz1 are required for lysis only when the outer
membrane is stabilized by millimolar concentrations of divalent cations (40, 42). The overlapping lysis genes are clustered in a
region referred to as the lysis cassette, and are located downstream of
the single late gene promoter pR' (Fig.
1A). The
R gene encodes the endolysin, a soluble, cytoplasmic transglycosylase that accumulates throughout late gene expression (2, 8). The S
gene, or holin, is a 107 codon open reading frame that encodes two
nearly identical inner membrane proteins with opposing functions
(3, 5, 10). Holins are responsible for controlling endolysin
access to the host cell wall (38). At a precisely scheduled
time programmed into the structure of the holin the host cytoplasmic
membrane is permeabilized, allowing the transglycosylase access to the peptidoglycan, resulting in immediate cell lysis (37-39).
Four lines of evidence speak to the nature of the hole. First, S acts independently of all other host and phage gene products to effect lysis; thus, the holes are thought to be composed solely of S protein
(13, 30, 38). Second, cross-linking experiments demonstrate
that the
S protein can exist in an oligomeric state in the inner
membrane (41). Third, the lesion has to be of sufficient size to allow the escape of fully folded 18-kDa endolysin in
-infected cells, as well as endolysins up to 70 kDa from other
phage-infected cells (12, 20, 23). Fourth, the hole is
apparently nonspecific since permeabilization of the membrane by
S
allows the escape of heterologous endolysins (7, 21, 34).
However, the true nature of the holin-mediated membrane lesion remains
elusive.

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FIG. 1.
lysis cassette, translational control region,
primary structure, and putative membrane topology for S. (A) All
four lambda lysis genes S, R, Rz, and
Rz1 lie in an overlapping cluster in the lysis cassette
downstream of the single late gene promoter pR'. Expression of the
lysis genes is dependent on the antiterminator protein Q. (B) The
primary structure of S is shown. Charged residues are indicated
by + or . Transmembrane domains as predicted by the TMHMM
program are indicated (===) below the sequence
(http://www.cbs.dtu.dk/services/TMHMM-1.0/) (32). The highly
charged dispensable C-terminal region is indicated by asterisks
(4), and the two start codons of S are indicated
(#) below the sequence. The missense changes of two early lysis alleles
are marked by arrows above the sequence. The position and sequence of
the oligo-histidine tag in S 94H is also indicated above the
sequence. (C) The dual-start motif of S is shown. The
boxed sequences indicate the Shine-Dalgarno sequences for the dual
translational starts of S. The length of both protein
products is given in amino acid (aa) residues. (D) Topological model
for S with three alpha-helical transmembrane domains
(2). A putative intermediate membrane topology for the lysis
inhibitor, S107 is also depicted (1).
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Despite a lack of structural data with respect to the hole, the
understanding of holin regulation and function has continued to
advance. It is known that two distinct proteins, S107 and S105, are
expressed from the S gene and are composed of 107 and 105 amino acids, respectively (Fig. 1B and C). Although these two proteins
differ by only two N-terminal residues (the N-terminal Met1-Lys2 extension of S107), they have
opposing functions. The shorter product, S105, is the actual lysis
effector, whereas the longer product, S107, functions as a specific
inhibitor of S105 (3, 5, 24). Genetic studies revealed an
mRNA secondary structure near the 5' end of the S gene
that controls translational initiations from Met1 and
Met3 (Fig. 1C). This structure, termed sdi (for
site-directed initiation), determines the ratio of S105 to S107, which
is approximately 2:1 (10). S107 has a dual capacity; it acts
as an inhibitor as long as the membrane is energized and actively
contributes to hole formation upon depolarization of the membrane
(3). Previous studies have shown that the additional positive charge at the N terminus of S107 is required for this inhibitory function (3, 33). Substitution of the lysine by the negatively charged residue glutamate not only abolishes inhibition but converts S107 into a lysis effector protein (3).
Recently, it has been shown that S has three membrane-spanning domains
with the N terminus located in the periplasm and the C terminus located
in the cytosol (9, 16, 17, 35) (Fig. 1D). Graschopf and
Bläsi have proposed a molecular basis for the difference between
S107 and S105 (16). These authors reported that the
extension of the N terminus of S105 with a secretory signal sequence
conferred leader peptidase dependency on the holin, strongly suggesting
that the translocation of the N terminus to the periplasm is required
for S function. Moreover, these results also implied that the extra
N-terminal positive charge of S107 prevents or retards translocation of
its N terminus to the periplasm, as demonstrated for other N-terminal
translocation events in oligotopic membrane proteins with the same
topology (Fig. 1D) (16, 35). Accordingly, the ability of
S107 to inhibit S105 suggests that it interacts directly with the holin
effector and that its N-in topology poisons hole formation, as
previously proposed (6).
Here we report genetic, physiological and biochemical experiments to
characterize the interaction between the
S holin and the holin
inhibitor in the membrane. The results are discussed in terms of a
model for the control of lysis timing and the evolutionary advantages
of the holin-endolysin pathway.
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MATERIALS AND METHODS |
Materials, strains, bacteriophages, plasmids, and growth
media.
N-Ethylmaleimide (NEM) and 1-10 phenanthroline
were purchased from Sigma-Aldrich (St. Louis, Mo.). All other reagents
were of the highest purity commercially available. The strains MC4100, XL1-Blue, the lysis-defective thermoinducible prophages
Cm
SR and
Kn
SR, and the
lysis-proficient thermoinducible prophages
CmS105
(expressing S105) and
CmS105
94 (expressing
the histidine-tagged S105
94) have been described
previously (24, 28, 31).
CmS107 is essentially
the same as
CmS105 with the exception that this phage has
the M3L instead of the M1L mutation within the S gene and
therefore expresses S107 protein only. Media, growth conditions, and
thermal induction of the
lysis genes from a prophage and/or plasmid
have been described previously (10, 17, 30). The ability of
S alleles to be triggered by cyanide was assessed by adding
KCN to a final concentration of 10 mM to a portion of an induced
culture. A 1 M KCN stock solution was freshly prepared just prior
to use. All cells harboring a plasmid were grown in Luria broth with
100 µg of ampicillin/ml. Cells harboring a kanamycin- or
chloramphenicol-resistant prophage were grown in LB with 40 µg of
kanamycin or 10 µg of Cm chloramphicol per ml, respectively. Cells
containing both a chloramphenicol-resistant prophage and an Ap plasmid
were grown in LB-ampicillin medium without chloramphenicol.
Standard DNA manipulations, PCR, site-directed mutagenesis, and
DNA sequencing.
Plasmids used in this study and plasmids newly
constructed by site-directed mutagenesis are listed in Table
1, along with the single base changes.
Site-directed mutagenesis was performed using the QuikChange kit from
Stratagene (La Jolla, Calif.) as described previously (17).
Base changes in all constructs were verified by automated fluorescence
sequencing as described previously (29).
Protein sample preparation, SDS-PAGE, Western blotting, and
immunodetection.
Triton X-100-solubilized preparations of inner
membrane proteins were obtained as described previously (10,
29). Briefly, 5-ml aliquots of induced cultures were disrupted by
a single passage through a large SLM-Aminco French pressure cell
(Spectronic Instruments, Rochester, N.Y.) at 16,000 lb/in2.
The membrane fraction was collected from the disrupted sample by
ultracentrifugation at 100,000 × g for 60 min at
18°C. The membrane pellet was solubilized in 50 µl of membrane
extraction buffer (1% Triton X-100, 10% glycerol, 0.5 M NaCl, 35 mM
MgCl2, 20 mM Tris-HCl, pH 8.0) for 12 to 14 h at
37°C. Where indicated, the membrane extraction buffer was
supplemented with 0.1 M NEM to avoid formation of disulfide bridges.
After solubilization of the membrane pellet, detergent-insoluble
material was removed by ultracentrifugation at 100,000 × g for 45 min at 18°C. Unless otherwise stated the
detergent-soluble fraction was diluted 1:1 with 2× protein sample
buffer devoid of reducing agent prior to sodium dodecyl
sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) analysis. Protein
samples were placed for 10 min at 37°C and then centrifuged at
14,000 × g for 5 min at room temperature. Proteins were separated on a precast 16% Tris-Tricine mini gel (Xcell II Minicell; Novex, San Diego, Calif.) following the manufacturer's instruction. Western blotting and immunodetection with anti-S antibodies were performed as described previously (17).
Determination of protein synthesis, protein stability, and
protein concentration.
To analyze levels of S synthesis as well as
protein stability, MC4100 (
Kn
SR) bearing the
plasmids pS107 or pS107C51S was induced at an
A550 of 0.2 as described above. Aliquots (5 ml) were withdrawn 30, 60, and 90 min after thermal induction, and the
Triton X-100 soluble fractions of inner membrane proteins were prepared
as described. Total protein concentrations of these extracts were
measured using the DC protein assay from Bio-Rad (Hercules,
Calif.) following the manufacturer's instructions. Protein samples
were mixed 1:1 with 2× sample buffer containing 2.8 M
-mercaptoethanol, incubated 5 min at 100°C, and centrifuged at
14,000 × g for 5 min at room temperature. Samples were
then analyzed by SDS-PAGE as described above.
Oxidative disulfide bridge formation in membranes.
Cultures
expressing one or two S alleles from a prophage, plasmid, or
both were induced as described above, except that the cells were
induced at an A550 of 0.3. Unless otherwise
stated, 5-ml aliquots were disrupted in a French pressure cell after
cell lysis was completed or 100 min after induction and oxidized with 20 mM CuSO4 and 60 mM 1-10 phenanthroline for 60 min at
room temperature. The reactions were stopped by the addition of 0.1 M
NEM, and incubation was continued at room temperature for an additional
60 min. A stock solution of CuSO4 was prepared in
double-distilled water, and stock solutions of 1-10 phenanthroline and
NEM were prepared in ethanol just prior to use. Membrane proteins were
extracted in the presence of 0.1 M NEM, and protein samples were
prepared for SDS-PAGE as described above. As a control to ensure that
disulfide bond formation did not occur during sample preparation, two
different plasmid-borne S alleles were induced in separate
cultures and mixed shortly before disruption in the French pressure
cell. These combined lysates were then subjected to centrifugation and
detergent extraction as described above.
 |
RESULTS |
Cys51 supports oxidative dimerization of
S but is nonessential for holin function.
Using the
cross-linker dithiobis(succinimidyl propionate), S oligomers up to
hexamers have been detected in the cytoplasmic membrane by Western blot
analysis (41). Even without the addition of a cross-linking
agent, an SDS-resistant S dimer band was observed on Western blots
(Fig. 2A, lane 2). Addition of reducing
reagents, such as dithiothreitol or
-mercaptoethanol, reduced the
intensity of this dimer band but did not completely abolish its
appearance (data not shown).
S has a single cysteine at position 51 which could be involved in dimer formation through the formation of an
intermolecular disulfide bridge. To test this hypothesis the Cys codon
at position 51 was mutated to Ser in the wild-type S gene as
well as in the S105 and S107 genes (where
S105 is SM1L producing only S105, and
S107 is SM3L producing only S107, with Met3 replaced by a Leu residue [5]).
Membrane extracts were prepared from cells in which
S105C51S was expressed. No dimer band was
detected with the cysteineless S variant (Fig. 2A, lane 3), indicating
that the SDS-resistant dimer was a product of disulfide bond formation
between Cys51 residues of two S105 molecules. The presence
of NEM during membrane extraction with Triton X-100 abolished the
formation of disulfide-bonded dimers, even in the absence of reductant
in the protein sample buffer (Fig. 2B). Thus, the SDS-resistant
disulfide-bonded dimers are not formed in the bacterial membrane
but during membrane extraction with detergent. The formation of a
disulfide bond is not required for holin function, since the
cysteineless S alleles were fully functional and caused even earlier lysis than the parental S allele (Fig. 2C).

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FIG. 2.
S monomer and dimer formation in the cytoplasmic
membrane. (A) Membrane protein samples were prepared from
MC4100( Kn SR) + pS105 (lane 2) or
MC4100( Kn SR) + pS105C51S (lane 3)
and analyzed by Western blotting. (B) Membrane protein samples of
MC4100( Cm SR) bearing the plasmids pKB1
(Sam7) (lane 2), pS105 (lane 3), pS105 94 (lane 4), or
pS105C51S (lane 5) were prepared in the presence of NEM in
the membrane extraction buffer and analyzed by Western blotting.
Molecular weights (mw) of the prestained molecular standards (in
thousands) (lane 1) are indicated to the left. S monomer and dimer
bands are indicated by arrows. (C) MC4100( Kn SR)
cells carrying the plasmids pKB110 (S+) ( ),
pS105 ( ), pSC51S ( ), or pS105C51S ( )
were induced and monitored for turbidity.
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Specific disulfide bridge formation via single cysteine at position
51 in the membrane under oxidative conditions.
Next we tested
whether disulfide bond formation between two S molecules could be
forced in the bacterial membrane under oxidative conditions. This would
allow the analysis of interactions between transmembrane segments
of S. Membranes from cultures expressing one or two S
alleles were subjected to oxidizing conditions by the addition of
CuSO4 and 1-10 phenanthroline. Disulfide bond formation was stopped by the addition of NEM prior to detergent extraction of the membrane proteins. As shown in Fig.
3, these conditions supported efficient
homodimer formation of S105 and S105
94, the latter of which carries
an oligo-histidine tag insert between residues 94 and 95 (Fig. 1B) and
thus displays a reduced mobility during SDS-PAGE (Fig. 3, lanes 3 and
4). In addition, heterodimers were formed between S105 and S105
94
(Fig. 3, lane 6). Replacement of the cysteine in S105 with a serine
prevented homo- and heterodimer formation (Fig. 3; lanes 5 and 7).
Expression of the same two S alleles S105 and
S105
94 in different cells failed to produce heterodimers
(Fig. 3, lane 8), showing that dimer formation between S molecules
occurred indeed in the membrane environment and not during
solubilization or a subsequent step in sample preparation.

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FIG. 3.
S dimer formation in the bacterial membrane. Oxidation
and sample preparation for Western blot analysis was performed as
described in Materials and Methods. Samples were prepared from
the indicated strains: lane 1, molecular weight standards; lane 2, MC4100( Cm SR) + pKB1 (Sam7); lane
3, MC4100( Cm SR) + pS105; lane 4, MC4100( Cm SR) + pS105 94; lane 5, MC4100( Cm SR) + pS105C51S;
lane 6, MC4100( CmS105 94) + pS105;
lane 7, MC4100( CmS105 94) + pS105C51S; lane 8, mixed cultures
MC4100( Cm SR) + pS105 94 and
MC4100( Cm SR) + pS105; lane 9: mixed cultures
MC4100( Cm SR) + pS105 94 and
MC4100( Cm SR) + pS105C51S.
Molecular weights of the prestained molecular standards (mw) (in
thousands) are indicated to the left of the panel. S monomer and dimer
bands are indicated with arrows.
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Direct interaction between the lysis protein S105 and the lysis
inhibitor S107 in the bacterial membrane.
It has been proposed
that the lysis inhibitor S107 inhibits lysis through intermolecular
interaction with the lysis effector S105 (6). Under
oxidative conditions S107 formed disulfide-bonded dimers in the
membrane (Fig. 4, lane 3). The
electrophoretic mobility of S107 homodimers was distinctively faster
than the mobility of the S105
94 homodimers (Fig. 4, lanes 3 to 5),
which made it possible to discriminate between homodimer and
heterodimer formation. Indeed, under oxidative conditions efficient
heterodimer formation between holin and holin inhibitor was
observed, if the membranes contained both the effector
S105
94 and the inhibitor S107 (Fig. 4, lane 6).

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FIG. 4.
Interaction between the holin S105 and holin inhibitor
S107 in the bacterial membrane. Protein samples were prepared and
analyzed by Western blotting as described in the legend to Fig. 3. Lane
1, molecular weight standards; lane 2, MC4100( Cm SR) + pKB1 (Sam7); lane
3, MC4100( Cm SR) + pS107; lane 4, MC4100( Cm SR) + pS105 94; lane 5, mixed
cultures MC4100( Cm SR) + pS105 94 and
MC4100( Cm SR) + pS107; lane 6, MC4100( CmS107) + pS105 94. Labeling of
the panel is as described in the legend to Fig. 3.
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The inhibitor function is abolished in the early lysis mutants
SC51S and SA52G.
The cysteineless S allele SC51S exhibited an
early lysis phenotype (Fig. 2C). The mutant
SA52G with a similar phenotype has been isolated
previously by genetic selection (Fig. 5A)
(18). The lysis phenotype of both mutants was distinctive.
Expression of wild-type S resulted in retarded lysis,
compared to S105, because the former produces the inhibitor
S107 in addition to the holin effector S105. In contrast,
expression of SC51S or
SA52G, which encode both the shorter and longer
forms, resulted in earlier lysis than with the alleles
S105C51S or S105A52G,
which produce only the short form of the protein (Fig. 2C and 5A). This
indicated not only that the S107C51S and
S107A52G proteins had lost their inhibitory capacity but
that they had been converted into effectors. A similar result has been
previously reported for the S107K2E mutant protein
(3).

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FIG. 5.
Lysis phenotype of SA52G,
S107A52G, and S107C51S.
In all panels, lysogens carrying the specified plasmids were induced
and monitored for turbidity. (A) Lysogen,
MC4100( Cm SR); plasmids, pKB110
(S+) ( ), pS105 ( ), pSA52G
( ), or pS105A52G ( ). (B) Lysogen,
MC4100( Cm SR); plasmids, pKB1 (Sam7)
( ), pS107 ( ), pS107C51S ( ), or
pS107A52G ( ). (C) Lysogen,
MC4100( Kn SR); plasmids, pKB1 (Sam7)
( ), pS107 ( ), or pS107C51S ( ). In this experiment
the cultures were divided into two flasks 90 min after induction and 10 mM KCN was added to one flask (dashed lines). The turbidity of the
culture was monitored until lysis was completed or 130 min after
induction.
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To examine the lysis phenotype of the mutant S107 proteins in more
detail, we constructed the plasmids pS107, pS107C51S, and pS107A52G, which each produce only the S107 form.
Expression of the mutant S107 alleles by transactivation in
induced lysis-defective lysogens had a more deleterious effect on cell
growth than expression of the parental S107 allele,
resulting in lysis onset at about 90 to 100 min after induction with
pS107A52G (Fig. 5B). Although S107C51S did not support lysis, it exhibited
more rapid triggering after addition of an energy poison than the
parental S107 allele (Fig. 5C). Furthermore, expression of
these mutant S107 alleles in trans to
S105 revealed that these S107 variants exhibit essentially no inhibitory effect (Fig. 6A). To ensure
that this loss of inhibitor capacity was not due to altered protein
synthesis or decreased stability, the accumulation of S107 and
S107C51S proteins was examined by Western blot analysis and
revealed no difference between the two proteins (Fig. 6B). Therefore,
we conclude that the loss of inhibitory function of the
S107C51S allele is not due to impaired expression or reduced protein stability. Another possibility is that
the loss of the inhibitor function is due to the inability of the
mutant S107 proteins to dimerize with S105. For S107C51S this cannot be tested with the oxidation method because of the lack of
the Cys residue. However, with A52G, this method revealed that
substantial heterodimer formation between S107A52G
and S105 can be detected (Fig. 6C). Although this technique does not
permit quantitative assessment of the capacity for heterodimerization, due to differential extractability from the oxidized membrane material, nevertheless we conclude that the severe reduction in the ability of S107A52G to function as a holin inhibitor
does not reflect a major loss in its ability to interact with S105.

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FIG. 6.
Expression of S107A52G and
S107C51S in trans to S105.
(A) The inhibitory effect of the mutant S107 protein was tested in
trans to S105. MC4100( CmS105) cells
carrying the plasmids pKB1 (Sam7) ( ), pS107 ( ),
pS107C51S ( ), or pS107A52G ( ) were
induced and monitored for turbidity. (B) Expression and stability of
S107 and S107C51S were analyzed by Western blotting as
described in Materials and Methods. Samples from the induced cultures
were taken 30, 60, or 90 min after induction. Lane 1, molecular weight
standards; lanes 2, 4, and 6, S107; lanes 3, 5, and 7, S107C51S. Time points when samples were taken are indicated
below the panel. Total protein (12.8, 21, or 28 µg) was loaded for
the 30, 60, or 90 min time points, respectively. Labeling of the panel
is as described in the legend to Fig. 3. (C) Aliquots (5 ml) of the
induced cultures were taken 50 min after induction. Oxidation and
sample preparation for Western blot analysis were performed as
described in Materials and Methods. Lane 1, molecular weight standards;
lane 2, MC4100( CmS105 94) + pS107A52G; lane 3, MC4100( CmS105 94) + pS107. Labeling of the
panel is as described in the legend to Fig. 3.
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DISCUSSION |
The role of the S protein in the
lytic cycle is to terminate
the vegetative phage cycle at a precisely scheduled time by allowing
the fully folded endolysin R access to its substrate, the
peptidoglycan. The structure of the membrane lesion which permits the
transit of R is unknown. In the simplest model, the S protein, which
has three transmembrane domains, would form an oligomeric hole at least
5 nm in diameter (to allow passage of the globular R protein
[12]) (16, 17, 38). Although direct evidence for the hole has not yet been obtained, the available biochemical, genetic, and physiological data support the concept of a
homo-oligomeric lesion in the membrane (39, 41).
The sole cysteine, Cys51, in the
S sequence has been
shown to be located in the core of the second membrane-spanning domain (17). In this work, it is shown that under oxidative
conditions a disulfide bond between two S molecules can be formed in
the membrane (Fig. 3). Under the oxidative conditions used in these experiments, approximately 50% of the total S105 protein can be trapped in this covalent dimer form (Fig. 3). Taken with the finding that the disulfide linkage itself is not required, as shown by the
lytic competence of the C51S mutant, this suggests that much of the
holin pool forms noncovalent dimers during the period leading to hole
formation. Using these oxidative conditions, we were also able to
obtain the first biochemical evidence for a direct interaction between
the lysis effector and the lysis inhibitor (Fig. 4). Although the
effector in this case is the histidine-tagged S105
94 protein, there
is ample evidence that the interaction between it and S107 is the same
as that between S105 and S107. First, the S105
94 allele
is expressed at normal levels and has a normal lysis time under
physiological conditions (31). Moreover, host lysis by either S105 or S105
94 is retarded equivalently
by the expression of S107 in trans (Fig. 6A and
data not shown). It is worth noting that the proportion of heterodimers
formed between S107 and S105
94, relative to the S107 homodimers, is
apparently higher than that observed with S105 and S105
94,
suggesting that the extra N-terminal Met1 Lys2
sequence confers on the inhibitor form of S a bias towards heterodimer formation.
It is unknown how the S107 inhibitor acts to block or retard the action
of S105. Recently, Graschopf and Bläsi (16) reported that fusing a secretory signal sequence to the N terminus of S not only
made lysis dependent on cleavage of the signal sequence but also
largely eliminated the functional difference between the effector and
inhibitor forms. This suggested a model in which, after integration of
transmembrane domains 2 and 3 (Fig. 1D) into the bilayer, the N
terminus of S107 with its extra cationic side chain is blocked from
penetration by the energized membrane, as reported for leader petidase
Lep and M13 coat protein gpVIII (11, 27). However, Barenboim
et al. (1) have shown that the dual-start motif functions
analogously in the type II holin gene S21, where
the N terminus is almost certainly located in the cytosol. In light of
these findings the longer gene products resulting from dual-start
motifs in class I and II holins may attain inhibitor capacity by
different molecular mechanisms. Regardless of the mechanism, there must
be a significant selective advantage in having an intrinsic inhibitor
system, since dual-start motifs have been identified in a number of
other class I and class II holin genes from phages of both
gram-negative and gram-positive bacteria (37, 39).
The demonstration here of efficient dimerization of holin proteins
within the membrane environment and a direct dimer interaction between
S105 and S107 suggests an operational basis for this selective advantage. In the scenario depicted in Fig.
7, it is postulated that the holin dimer
is the fundamental unit of assembly of the holin lesion and that S107
exerts its inhibitory effect by dimerizing with S105, creating
heterodimers which are either nonfunctional or of reduced
functional capacity. Functional, in this case, is defined as counting
in the pathway towards assembly of an oligomeric lesion, which is drawn
in Fig. 7 as a hole of six dimers for illustrative purposes. This model
is supported by the work of Chang et al. (10), which
demonstrated a correlation between lysis timing and the excess of S105
over S107. Based on the 2:1 ratio of S105 to S107 prior to the
triggering of lysis, about half of the S105 molecules would be
unavailable by virtue of dimerization with S107. If about 1,000 molecules of S are present per cell at the time of lysis, then there
would be about 500 dimers, of which two-thirds would be inactive
heterodimers if S107 preferentially complexes with S105. The effect is
that the timing of lysis, reflecting the rate of accumulation of the
active S105 homodimers, is delayed because half of the effector is
hidden from participating in the formation of the first lesion.
However, once that first lesion is formed, the membrane potential would
collapse, eliminating the inhibitory capacity of S107 (3,
5). Thus, suddenly all of the previously inactive S105-S107
heterodimers would be triggered into forming the permeabilizing
lesions.

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FIG. 7.
Model for lysis inhibition by S107. S105 and S107
molecules are represented by gray and black rectangles, respectively.
The model assumes that holin dimers are the functional unit for the
assembly of the membrane lesion; that S107 preferentially forms
heterodimers with S105, which is in a twofold excess over S107; and
that S105-S107 heterodimers are nonfunctional for hole formation. Once
the first membrane lesion is formed the membrane potential ( )
collapses, which allows the inactive S105-S107 heterodimers to
participate in hole formation.
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Two main advantages are conferred by such a system. First, very precise
adjustment of the timing of hole formation, and thus the length of the
vegetative phase of phage development, can be achieved by altering the
relative proportion of inhibitor and effector. Wang et al.
(36) have shown that there is an optimal time for lysis for
any particular combination of bacterial and phage growth conditions,
and clearly the dual-start motif would constitute an ideal system for
evolutionary fine-tuning to the best lysis time. Moreover, it is
possible that there are physiological conditions that would alter the
S105/S107 ratio, either through effects on the translational control of
S or perhaps through selective proteolysis of the inhibitor
or effector forms. Second, the system also confers a saltatory nature
to the lysis phenomenon, because at the instant of triggering (either
when the first hole forms naturally or when an exogenous factor
depolarizes the membrane), the amount of functional dimers is trebled,
presumably allowing many more permeabilizing lesions to form. As has
been suggested elsewhere, it is crucial that the lytic process, once
begun, be as rapid and complete as possible, for the obvious reason
that no further particle assembly occurs once the cell is
physiologically dead because of the permeabilized membrane
(6). Thus, the dual-start motif contributes to keeping the
infected cell productive for as long as is optimal but then minimizing
the dwell time in the lysing corpse of the host.
The data clearly show that the two mutations A52G and C51S both largely
ablate the inhibitory capacity of S107 (Fig. 6A). For the C51S
mutation, it is also clear that this loss of inhibitory function is not
due to decreased accumulation in the membrane (Fig. 6B). Moreover, this
loss of inhibitory function is not due to a general reduction in the
ability to participate in oligomeric interactions, because, at least
with A52G, the S107 product not only loses inhibitor function but also
gains effector function (Fig. 5B). Both changes also significantly
accelerate the triggering of lysis in the context of the S105 effector
protein (Fig. 2C and 5A). The simplest interpretation is that the
S105-S107 heterodimers are blocked from participating in the formation
of the oligomeric lesion because of a required conformational change
that is favored by the A52G and C51S changes and blocked by the extra
N-terminal positive charge on S107. Experiments to determine whether
this involves the putative externalization of the N-proximal
transmembrane domain are in progress.
Support for this work was provided by PHS grant GM27099 and funds
from the Robert A. Welch Foundation and Texas Agricultural Experiment Station.
We thank all the members of the Young laboratory for their support and
Sharyll Pressley for her always-reliable secretarial assistance.
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