Journal of Bacteriology, November 2000, p. 6366-6373, Vol. 182, No. 22
0021-9193/00/$04.00+0
Copyright © 2000, American Society for Microbiology. All rights reserved.
Centro Nacional de Biotecnología, Consejo Superior de Investigaciones Científicas, Campus de Cantoblanco, 28049 Madrid, Spain,1 and Université Libre de Bruxelles, Laboratoire de Chimie Physique des Macromolécules aux Interfaces (LCPMI), B-1050 Brussels, Belgium2
Received 19 June 2000/Accepted 23 August 2000
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ABSTRACT |
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The role of the carboxy terminus of the Escherichia
coli cell division protein FtsA in bacterial division has been
studied by making a series of short sequential deletions spanning from residue 394 to 420. Deletions as short as 5 residues destroy the biological function of the protein. Residue W415 is essential for the
localization of the protein into septal rings. Overexpression of the
ftsA alleles harboring these deletions caused a coiled cell
phenotype previously described for another carboxy-terminal mutation
(Gayda et al., J. Bacteriol. 174:5362-5370, 1992), suggesting that an
interaction of FtsA with itself might play a role in its function. The
existence of such an interaction was demonstrated using the yeast
two-hybrid system and a protein overlay assay. Even these short
deletions are sufficient for impairing the interaction of the truncated
FtsA forms with the wild-type protein in the yeast two-hybrid system.
The existence of additional interactions between FtsA molecules,
involving other domains, can be postulated from the interaction
properties shown by the FtsA deletion mutant forms, because although
unable to interact with the wild-type and with FtsA
1, they can
interact with themselves and cross-interact with each other.
The secondary structures of an extensive deletion, FtsA
27, and the
wild-type protein are indistinguishable when analyzed by Fourier
transform infrared spectroscopy, and moreover, FtsA
27 retains the
ability to bind ATP. These results indicate that deletion of the
carboxy-terminal 27 residues does not alter substantially the structure
of the protein and suggest that the loss of biological function of the
carboxy-terminal deletion mutants might be related to the modification
of their interacting properties.
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INTRODUCTION |
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FtsA is an essential cell division protein of Escherichia coli that is widely conserved in bacteria. Together with ftsZ, which codes for a GTPase analog of the eukaryotic tubulin, ftsA forms one of the most frequently conserved gene pairs among the cell division genes in the eubacteria. Based on sequence homology it has been proposed that FtsA belongs to the sugar kinase/hsp70/actin superfamily (4). This superfamily comprises several proteins with a common two-domain topology and the ability to bind and hydrolyze ATP. FtsA binds to columns of ATP-agarose and can be isolated from cells either as a phosphorylated or a nonphosphorylated form (29), but so far no other biochemical function has been described for this protein.
FtsA is present both in the cytoplasm and in the cytoplasmic membrane (29), where it forms a structural part of the septum (32). It has been proposed that FtsA is a component of a membrane-associated complex (septator or divisome), which would include periplasmic, transmembrane, and cytoplasmic proteins acting coordinately to perform septation (27, 35). Genetic analysis suggests that FtsA may interact, directly or indirectly, with other cell division proteins, such as FtsZ, PBP3, FtsQ, and FtsN (9, 10, 24, 33, 34). The FtsZ/FtsA ratio is important for cell division, and the localization of FtsA to a central position along the cell length depends on the formation of the FtsZ ring (1, 8, 11, 15, 23). Accordingly, the interaction between FtsA and FtsZ from different bacteria has been established using the yeast two-hybrid system (12, 25, 38, 40). In addition the presence of functional FtsA is required for the localization of FtsK, PBP3 (also known as FtsI), FtsQ, and FtsN to the septal ring (2, 7, 37, 41), suggesting that FtsA may indeed be a part of a multiprotein complex (27).
Interaction of FtsA with itself has been suggested based on the ability of ftsA104 (coding for FtsA104: T215A) to complement efficiently two ftsA(Ts) mutations (ftsA2 and ftsA3), but with less efficiency an amber one (ftsA16) (29), and has been recently reported by Yan et al. (40) using the two-hybrid system. Involvement of the protein carboxy terminus in the interaction was suspected from previous results showing that overproduction of a carboxy-terminally truncated form of FtsA causes the formation of long fibers in the cells that also show a curved morphology phenotype (17).
To study the role of the carboxy terminus in the function of FtsA a series of mutants with sequential deletions spanning from 1 to 27 residues was constructed. We have found that this region is essential for the biological activity and for the correct self-interaction of the protein and that the residue W415 is essential for the correct localization of FtsA into septal rings.
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MATERIALS AND METHODS |
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Bacterial and yeast strains, media, and growth conditions.
E. coli strain DH5
[F
endA1 hsdR17
supE44 thi1 recA1 gyrA relA1
(lacZYA-argF)
U169, (
80lacZ
M15) (19)] was
used as host for cloning. Strain OV2 [F
ilv leu
thyA (deo), his, ara(Am),
lac125(Am) galKu42(Am) galE trp(Am)
tsx(Am) tyrT] [also known as
supFA81(Ts)] was used as wild type for ftsA
(31). Strains OV16 [as OV2 ftsA16(Am)
(13)] and D2 [as OV2 ftsA2(Ts)
leu+ (31)] were used for cell
division complementation assays. BL21(DE3) pLysS [F
ompT hsdSB (rB
mB
) gal dcm (DE3); obtained from
Novagen] was used for expression of His-tagged FtsA forms.
Luria-Bertani (LB) broth (28) and LB agar, supplemented with
antibiotics when required (ampicillin, 100 µg/ml; kanamycin, 50 µg/ml; chloramphenicol, 50 µg/ml; and rifampin, 25 µg/ml) were
used for routine cultures of E. coli at 37°C (except when
indicated otherwise). Strains carrying ftsA(Ts) alleles used
for complementation assays were grown in nutrient broth medium (Oxoid
no. 2 nutrient broth) supplemented with thymine (50 µg/ml) (NBT) and
antibiotics when required and incubated at the permissive (30°C) or
restrictive (42°C) temperatures. Complementation tests were done as
described by Sánchez et al (29). VIP386 is BL21(DE3)
harboring pMFV12 (expressing an N-terminal fusion of
ftsA+ to His tag under the control of a T7
promoter contained in a pET28a plasmid purchased from Novagen;
construction and strain obtained from M. J. Ferrándiz).
VIP516 is BL21(DE3) harboring pSRV2 (expressing an N-terminal fusion of
ftsA
27 to His tag under the control of a T7 promoter
contained in a pET28a plasmid).
Cell parameter measurements, photography, and immunofluorescence microscopy. Cultures were grown at the permissive temperature in liquid media in a shaking water bath so that balanced growth was maintained for several doublings (not less than four) before the beginning of the experiment. The optical density at 600 nm (OD600) was measured using a Shimadzu UV-1203 spectrophotometer; the optical density was always kept below 0.40 to 0.50 by appropriate dilution with prewarmed medium. Particles were fixed in 0.75% formaldehyde and counted using a ZM Coulter counter, with a 30-µm-diameter orifice connected to a C1000 Channelyzer (both from Coulter Electronics). Cells were spread on thin agar-azide layers and photographed under phase-contrast optics using a Sensys charge-coupled device camera (Photometrics) coupled to a Zeiss Axiolab HBO 50 microscope. The software used for image capture was IPLab Spectrum, and Adobe Photoshop 5.0.2 software was used for processing.
For immunofluorescence microscopy cells grown as indicated above were prepared as described by Addinall and Lutkenhaus (1). The final lysozyme concentration used was 8 µg/ml, and the permeabilization time was 1 min. The primary antibody used for FtsA immunolocalization was MVM1, a polyclonal antiserum raised against FtsA (29) previously purified by membrane affinity. Cy3-conjugated anti-rabbit serum (Amersham Pharmacia Biotech) was used as the secondary antibody. Cells were observed by fluorescence microscopy using a Zeiss Axiolab HBO 50 microscope, with a 100× immersion oil lens. Images were captured with a Sensys charge-coupled device camera (Photometrics), fitted with an HQ:CY3 filter (excitation, 545/30 nm; emission, 610/75 nm; beam splitter, 565LP).Plasmid constructions and DNA manipulation. Plasmid DNA isolation, cloning techniques, and transformation procedures were done as described by Sambrook et al. (28). Restriction endonucleases and other enzymes were purchased from and used as recommended by Roche Molecular Biochemicals. DNA was sequenced by the dideoxynucleotide method using Sequenase version 2.0 (U.S. Biochemicals). Two-hybrid system cloning vectors (pGAD424 and pGBT9) were obtained from Clontech.
Plasmid pLYV29 contains the 3'-truncated ftsA
27 allele
(with an ochre codon spontaneously inserted instead of the Glu-394 coding triplet, thus rendering an FtsA protein lacking the last 27 residues), cloned into the vector pJF119HE (16). Plasmid pLYV32 contains the ftsA
23
36 allele (resulting from a
spontaneous frameshift in the 3' end of the gene, rendering an FtsA
protein with the last carboxy terminal 23 residues replaced by a
different 36-residue sequence), cloned into pJF119EH (as pJF119HE but
with the multicloning site in the opposite orientation). Plasmids
pLYV33, -34, -35, and -41 encode different carboxy-terminal deletion
derivatives of FtsA, (lacking the last 13, 6, 5, and 1 residues
respectively), cloned into pJF119EH. Plasmid pLYV30 contains the
wild-type ftsA gene cloned into pJF119HE. These deletions
were obtained by PCR-mediated mutagenesis as follows. The 3'
ftsA coding region was obtained from pZAQ (39) by
PCR amplification with the upstream primer MF11
(5'-GGGGTGAACGACCTCGAA-3') and the following downstream
primers (respectively): LY23
(5'-ATAGTCGACTTACGAGCCAACTGATGCTGT-3'), which inserts a stop
codon instead of the TGG coding for Trp-408 and a SalI
restriction site immediately downstream; LY24
(5'-ATAGTCGACTTAACTATTGAGTCGCTTGATC-3'), which inserts a
stop codon instead of the TGG coding for Trp-415 together with a
SalI restriction site immediately downstream; LY25
(5'-ATAGTCGACTTACCAACTATTGAGTCGCTTG-3'), which inserts a stop codon instead of the CTG coding for Leu-416 and a SalI
restriction site immediately downstream; and LY28
(5'-ATAGTCGACTTACTCTTTTCGCAGCCAACT-3'), which inserts a stop
codon instead of the TTT coding for Phe-420 together with a downstream
SalI restriction site. The PCR-amplified fragments were
digested with AscI and SalI and were used to
replace the 3' region of ftsA
23
36 in pLYV32. The
presence of all the mutations was confirmed by DNA sequencing.
Plasmids for the complementation assays were constructed as follows.
The 3' end fragments of the partially deleted ftsA alleles (from the AscI site to the end of the gene) were obtained
from plasmids pLYV29, -33, -34, -35 and -41 by digestion with
appropriate enzymes and were cloned into pMSV20 (29) in
place of the wild-type 3' region to give plasmids pLYV57, -58, -59, -60, and -61, respectively. This places the corresponding deletion
mutant alleles downstream from an ftsQ sequence fragment
(starting at a NdeI site). This sequence context working
together with any potential readthrough transcription from the plasmid
promoters at the copy number of the vector (a pBR322 derivative)
produces levels of each protein that fall within the level range found
in strains expressing the wild-type ftsA+ from
the chromosome (from 0.90 to 1.14 at 30°C, and from 1.36 to 1.73 at
42°C, relative to the values measured in OV2).
Plasmids for the GAL4 two-hybrid assays were constructed as follows.
The ftsA+ coding sequence was obtained from pZAQ
(39) by PCR amplification with the upstream and downstream
primers MF24 (5'-AATCGCATATGATCAAGGCGACGGACA-3') and LY20
(5'-CAGGTCGACCGTAATCATCGTCGGCCTC-3'), which incorporate the
restriction sites NdeI and SalI, respectively.
The amplified fragment was cloned into pGBT9 and pGAD424 containing
amino acids 1 to 147 of the DNA-binding domain of GAL4 and amino acids
768 to 881 from the activation domain of GAL4 respectively, yielding plasmids pLYV44 and pLYV43. These plasmids were used as templates for
the construction of the GAL4-ftsA truncated allele fusions by replacing the wild-type 3' end with the corresponding 3'-truncated regions obtained by digestion of pLYV29, -32, -33, -34, -35, and -41 with AscI and SalI.
To construct the His-FtsA+ fusion the coding sequence of
ftsA+ was amplified from pZAQ using
oligonucleotides MF24 (which introduces an NdeI restriction
site overlapping with the ftsA initiation codon,
5'-AATCGCATATGATCAAGGCGACGGACA-3') and MF19 (which is just downstream of an EcoRI site in the 3' extreme of
ftsA, 5'-CATCGGTATTTACCGCGAAG-3'). The PCR
product was digested with NdeI and EcoRI and
cloned into the vector pET28a (Novagen) to yield plasmid pMFV12.
Construction of plasmid pSRV2, used to produce His-FtsA
27, involved
ligation of a 360-bp AscI-EcoRI fragment from
pMFV5 to a similarly digested pMVF12. pMFV5 contains the
ftsA106 allele in which the following changes are present:
M167T, T215D, and an ochre codon at position 394. The D210A
ftsA mutation was constructed by inverse PCR
using oligonucleotide JM1 (5'-ATAGCGACGACGCAGAC-3')
as a mutagenic primer and JM2 (5'-CGGTGGTGGTACAATGG-3')
and pMFV12 as template DNA. These constructions were checked by sequencing.
Yeast two-hybrid assays.
Yeast strains were transformed
using the Li acetate method (18) and selected in SD medium
supplemented with the required amino acids and glucose at 30°C.
Qualitative
-galactosidase assays were performed using Whatman no. 5 filters as described in the Matchmaker kit manual (Clontech). For color
development, filters were incubated up to 16 h at 30°C (although
no changes were usually observed after 3 h). For quantitative
analysis of the interactions
-galactosidase assays were done in
liquid cultures at exponential growth phase using ONPG
(o-nitrophenyl-
-D-galactopyranoside) as the
substrate as described by Miller (26). Cell lysis was achieved by two freeze (dry ice-ethanol) and thaw (37°C) cycles. The
values presented are the average of at least three independent experiments, carried out in duplicate each time.
Expression and purification of wild-type and carboxy-terminally
truncated FtsA proteins used in Fourier transform infrared (FTIR) and
circular dichroism (CD) spectroscopy measurements.
E. coli
strains VIP386 (His-FtsA+) and VIP516 (His-FtsA
27) were
grown at 37°C in LB medium supplemented with antibiotics when required (50 µg of kanamycin and/or chloramphenicol per ml) to an
OD600 of 0.4. Overexpression of the proteins was induced
with 0.5 mM IPTG (isopropyl-
-D-thiogalactopyranoside).
Thirty minutes after addition of the inducer, rifampin (25 µg/ml) was
added to the cell culture. Growth was continued for 1 or 2 h
depending on the strain. Cells were harvested by centrifugation and
resuspended in ice-cold buffer A (5 mM imidazole, 10 mM HEPES [pH
7.9]). The bacteria were lysed by sonic disruption and centrifuged for
15 min at 10,000 rpm at 4°C (10,800 × g) (Sorvall
SA-300 rotor). The His-tagged proteins recovered in the supernatant
were purified by metal affinity chromatography on a cobalt column
(TALON resin; Clontech) equilibrated with buffer A. The proteins were
eluted with a step gradient of imidazole ranging from 30 to 200 mM in a
10 mM HEPES, pH 7.9, buffer. Integrity and purity of proteins were
checked by sodium dodecyl sulfate-12% polyacrylamide gel electrophoresis (SDS-12% PAGE), and fractions containing pure proteins were pooled and dialyzed against 2 mM HEPES, pH 7.9, before analysis.
Overlay assays. Sample proteins were blotted to nitrocellulose membranes (Schleicher and Schuell) using a slot blot filtration manifold (Amersham Pharmacia Biotech AB). The membranes were blocked by incubation for 1 h with 3% skimm milk in blotting buffer (50 mM Tris [pH 7.5], 150 mM NaCl, 5 mM EDTA, 0.05% IGEPAL CA-630). Purified His-FtsA+ was biotinylated in vitro with D-biotin-N-hydroxysuccinimide ester (Roche Molecular Biochemicals) following the manufacturer's instructions. The nitrocellulose membranes were washed with blotting buffer and then incubated for 1 h at room temperature with biotinylated His-FtsA+ (0.1 µg/ml) in blotting buffer. The membranes were then washed and incubated for 1 h with streptavidin-peroxidase conjugate (1:10,000; Roche Molecular Biochemicals). After extensive washing, biotinylated FtsA bound to the membranes was detected using the BM chemiluminiscence blotting substrate (POD; Roche Molecular Biochemicals).
Photoaffinity labeling.
Proteins were purified by
Ni-nitrilotriacetic acid chromatography. For labeling, the imidazole
elution buffer was changed in a G-50 column (Amersham Pharmacia Biotech
AB) to labeling buffer (50 mM Tris [pH 8.0], 50 mM NaCl, 5 mM
MgCl2, 2 mM dithiothreitol). Three micrograms of protein
was mixed with 2 µCi of 8-azido[
-32P]ATP (20 Ci/mmol; ICN Biochemicals) in 20 µl. After a 5-min incubation in the
dark the samples were placed on a paraffin film and irradiated for 10 min with a UVP model GL-25 UV lamp at a distance of 10 cm from the
samples. After irradiation, samples were mixed with 50 µl of
Ni-nitrilotriacetic acid in binding buffer, washed twice, and mixed
with SDS-PAGE loading buffer containing 10 mM EDTA. Labeled proteins
were analyzed by SDS-PAGE and autoradiography of the dried gels.
ATR-FTIR spectroscopy.
Attenuated total reflection
(ATR)-FTIR spectra were recorded at 20°C on a Bruker IFS-55
spectrometer, equipped with a liquid nitrogen-cooled mercury cadmium
telluride detector with a nominal resolution of 2 cm
1.
The spectrometer was continuously purged with dry air. The proteins were spread on a germanium ATR plate with an aperture angle of 45°
(50 by 20 by 2 mm; Harrick EJ2121) by slowly evaporating the sample
under nitrogen. A total of 1,024 scans were averaged to improve the
signal/noise ratio and corrected for the spectrum of the clean ATR plate.
CD spectroscopy.
Spectra of FtsA and FtsA
27 were recorded
in 2 mM HEPES, pH 7.9, at room temperature, using a Jasco J-710
spectropolarimeter in quartz cells with a 0.02-cm path length. The
spectra were monitored from 185 to 260 nm, using a scan speed of 50 nm/min, a response time of 2 s, a band width of 1.0 nm, and a
resolution of 2 data points/nm. Eight spectra were averaged and
subsequently corrected for the spectrum of the buffer.
Analysis of secondary structure.
The determination of
protein secondary structure was based on a multivariate statistical
analysis method of band shape recognition (Oberg et al., unpublished
data). This analysis used a commercially available partial
least-squares package to determine fractional secondary structure
composition (PLSPlus 2.1 for Spectra Calc; Galactic Industries, Salem,
N.H.). A reference set (RaSP50) was generated by collecting ATR-FTIR
and CD spectra of 50 proteins with known X-ray structures selected to
represent a wide range of helix and sheet compositions as well as 60 different protein domain folds. To analyze combined CD and IR data,
hybrid spectra were built by placing side-by-side CD (185 to 260 nm)
and IR (1,720 to 1,500 cm
1) spectra in a single array.
Before analysis, all spectra were normalized so that the PLS algorithm
was forced to use band shapes, rather than absolute intensities. Cross
validation procedures using the RaSP50 protein spectra have shown root
mean square structure determination errors of ±4.5% for
-helix and
±6.3% for
-sheet conformations.
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RESULTS |
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Deletion mutants of FtsA lacking five or more residues from the
carboxy terminus are not biologically active in E. coli.
To
study the role of the carboxy terminus of E. coli FtsA on
its function, a series of sequential ftsA deletion mutants
comprising codons coding for 1, 5, 6, 13, and 27 amino acid residues
from the carboxy terminus were constructed (Fig.
1). A spontaneous mutant in which the
last 23 residues have been replaced by a 36-residue unrelated amino
acid sequence, FtsA
23
36, was also studied. The functionality of
these mutants was analyzed by complementation assays of strains
containing either a thermosensitive ftsA mutation (D2) or an
amber mutation in ftsA in a temperature-sensitive suppressor background (OV16). Strains D2 and OV16 were transformed with plasmids expressing the deletion or wild-type ftsA alleles at levels
similar to the expression of ftsA from the chromosome
(pLYV57, -58, -59, -60, -61, and pMSV20), and their ability to grow on
NBT plates at 30 or 42°C was tested. Western blot analysis using an
affinity-purified antibody raised against FtsA indicated that, when
produced under the same gene expression conditions, the cellular levels
of all the truncated forms were similar to those of the wild-type
protein at both growth temperatures (see Materials and Methods);
consequently, the possibility that expression from an artificial
system, or in vivo thermal instability of the mutant forms can cause
unspecific side effects on viability can be excluded. The results of
the complementation analysis show that only
ftsA+ and ftsA
1 are able to rescue
the two strains (Table 1). The ftsA
5 allele in its turn is able to partially complement
ftsA2 but not ftsA16. No complementation of any
of the two mutations was observed when the ftsA
6,
fts
13, fts
27, and fts
23
36
were tested. We conclude that deletion of five or more FtsA
carboxy-terminal residues yields proteins that are not functional in
vivo, suggesting that this part of the molecule has an important role
on the biological activity of FtsA.
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1 or
ftsA+ restored the length of the OV16 cells to
wild-type (OV2) values [note that OV16 cells at 42°C are filaments
while at 30°C are some 25% longer than the wild-type OV2 at the same
temperature, due to the lower amounts of FtsA provided by the
combination of an amber mutation, ftsA16, with a
low-efficiency temperature-sensitive tyrT suppressor,
supFA81(Ts) (6)]. On the other hand the presence of plasmids containing any of the other ftsA deletion
mutants had no effect in shortening the length of OV16 cells. These
results indicate that the FtsA forms do not exert a trans
dominant effect over the wild type, and that, except FtsA
1, they are
not active in cell division.
To analyze the subcellular localization of the mutant proteins by
immunofluorescence, strain OV16 grown at 42°C, which produces negligible amounts of FtsA from the chromosome (less than 1%) was
used. The analysis of these cells showed that the wild-type and
1
proteins correctly localize, forming a septal ring in the cell center
(Fig. 2A and B). The mutated FtsA
5 was
still able to form rings, but in agreement with the lack of
complementation of this mutation in OV16 they were not functional, as
the cells did not divide and formed long filaments (Fig. 2C). The
mutated FtsA
6, Fts
13, and Fts
27 were not able to localize in
the cell center (Fig. 2D shows the results for FtsA
27).
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Effect of the overexpression of FtsA carboxy terminus deletion mutants on cell morphology. Increasing amounts of FtsA cause cell filamentation, a phenotype that has been interpreted as the result of an imbalance in the FtsA/FtsZ ratio (8, 11). However, the overproduction of FtsA carboxy-terminal truncations causes a peculiar phenotype, in which the cells coil forming C-shaped (short) and coiled (longer) cells (CC phenotype). This phenotype has already been observed by Gayda et al. (17) in wild-type cells containing a form of FtsA lacking the last 28 residues encoded by a plasmid.
As expression of the deletion mutants at low levels did not alter the cell shape, we cloned them in expression vector pJF119 under the control of the Ptac promoter and analyzed their phenotypes upon induction with 50 µM IPTG. Overproduction of FtsA
1 in strain
OV16 at either 30 or 42°C generated straight filaments similar to
those obtained when overexpressing the wild-type protein (data
not shown). Overexpression of the mutant ftsA
5, on
the other hand, generated a pronounced CC phenotype (Fig.
3A) at either permissive or restrictive
temperatures. Induction of the ftsA
6, ftsA
13, and ftsA
27 mutants produced the CC
phenotype only at 30°C, while at 42°C (when no more than 1% of the
wild-type levels of FtsA+ are produced from the chromosomal
gene) they formed straight filaments (Fig. 3B shows the results for
ftsA
27). To find out whether this was due to temperature
sensitivity of the mutant proteins or to the lack of functional septa,
they were overexpressed in E. coli OV2, the parental
ftsA+ strain of OV16. In this case all the
mutants showed the curly phenotype at both 30 and 42°C. These results
suggested that in ftsA
6, ftsA
13, and
ftsA
27, as well as in ftsA
23
36, the
phenotype depends on the presence of the full-length protein, while in
ftsA
5 the phenotype is independent of it.
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A carboxy-terminally truncated FtsA protein, FtsA
27, retains its
secondary structure and its ability to bind ATP.
To test if the
carboxy-terminal deletions had any effect on the structure of FtsA we
analyzed the secondary structure of His-FtsA+ and
His-FtsA
27 (the protein missing the longest carboxy terminus stretch
among the ones used in this study). ATR-FTIR and CD spectra were
recorded in 2 mM HEPES, pH 7.9. No significant difference was
detected between the spectra of both proteins (Fig.
4). Their secondary structure was
determined by a new method based on the recognition of the
spectral bandshapes (K. Oberg, J.-M. Ruysschaert, and E. Goormaghtigh,
unpublished data). The input spectra are made of a combination of
ATR-FTIR and CD spectra, and the secondary structure fractions are
determined by similarity of the hybrid patterns to the reference set
made of 50 selected proteins. The data reported in Table
2 show no obvious change in the secondary structure of the protein resulting from the truncation of the carboxy
terminus. We must stress here that the variations observed are in the
range of the structure evaluation method error and therefore are not
related to any structural modification of the His-FtsA
27
polypeptidic chain with respect to the wild type.
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-32P]ATP to purified
His-FtsA+ and His-FtsA
27 was tested as a clue to the
structural integrity of the ATP binding site. FtsA
27 was able to
bind ATP to an extent similar to that of the wild type, showing that
the carboxy terminus deletion does not affect the structure of the
ATP-binding site (Fig. 5). As a negative
control the His-FtsA D210A mutant
which, by analogy to other members
of the same protein family (4, 21), was predicted to not
bind ATP
was used. As expected, it did not bind ATP (Fig. 5).
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27 is
functional and its secondary structure is nearly identical to that of
the wild-type protein. From these results it can be concluded that the
inability of ftsA
27 (the more extensive truncation analyzed) to complement ftsA2 or ftsA16 is not
likely to be caused by a major disruption of the structure of the
resultant protein.
Role of the carboxy-terminus in interaction of FtsA molecules.
The different phenotypes produced by the mutants in OV2 and OV16 at
42°C suggested that the FtsA molecules might establish interactions
with one another. To test this possibility the yeast two-hybrid system
(14) was used. The wild-type ftsA gene was fused
to the GAL4-binding and activation domain sequences, and the resulting
plasmids were transformed into the yeast reporter strain SFY526.
Control experiments showed that FtsA+ alone does not
activate transcription from the GAL4 promoter. But when both fusion
genes were assayed together, blue colonies were obtained in filter
assays (Table 3), and 10.9 ± 1.8 Miller units of
-galactosidase activity were measured in liquid
culture assays, demonstrating that FtsA+ molecules interact
in the yeast two-hybrid.
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-galactosidase activity
(Table 3). Control experiments showed that none of the FtsA truncated
hybrids were capable of activating the expression of the reporter gene
by itself (data not shown). When only the last amino acid (the highly
conserved Phe-420) was removed from the carboxy terminus, the resulting
FtsA
1 protein was still able to interact both with the wild-type
form and also with itself to a similar extent as the wild-type form
did, suggesting that Phe-420 is dispensable for the interaction as it
is for the biological role of FtsA.
When assayed in combination with the full-length FtsA+
hybrids, the rest of the FtsA hybrids formed white colonies, indicating that deletions of five residues or more from the FtsA carboxy terminus
are sufficient to impair the interaction with the wild-type protein. On
the other hand, each truncated protein was able to interact with
itself, and with the other deleted forms, except with FtsA
1 (Table
3). This result, although unexpected, indicated that the hybrid
proteins were correctly synthesized in yeast, were efficiently
transported into the nucleus, and maintained a tertiary structure
proficient for the interaction.
In an alternative approach His-tagged FtsA+ was purified to
study the interaction in vitro. His-FtsA+ was bound to a
nitrocellulose membrane using a slot blot apparatus. A fraction of the
protein was biotinylated in vitro and incubated with the membrane for
1 h. After several washes the membrane was incubated with a
streptavidin-peroxidase conjugate and developed by chemiluminiscence
(Fig. 6). While the biotinylated protein did not bind to bovine serum albumin used as a control, it bound strongly to His-FtsA+, confirming the results obtained with
the yeast two-hybrid system. His-FtsA
27 shows a decrease in the
relative affinity of the interaction with the soluble biotinylated
His-FtsA+ (Fig. 6), resulting in a binding too weak to be
observed in the yeast two-hybrid assay.
|
| |
DISCUSSION |
|---|
|
|
|---|
Several mutants producing carboxy terminus truncations of the FtsA
cell division protein that can be grouped in three categories have been
constructed. The first one, FtsA
1, behaves in all respects like the
wild-type protein, showing that the last Phe residue, even though it is
conserved in many sequences, is dispensable. Next, FtsA
5 is able to
localize into mid-cell rings but does not complement ftsA
mutations and, when overproduced, generates coiled cells
independently of the presence of the full-length protein.
Finally, FtsA
6, FtsA
13, FtsA
27, and FtsA
23
36, which are
not functional, do not localize into septal rings, and produce coiled
cells only in the presence of a full-length FtsA, but not in its
absence (Fig. 3). All together, these results indicate that residues
415 to 419 are necessary for the biological function of FtsA, which is
in agreement with the results of Ma et al. (23), who, by
using green fluorescent protein fusions, mapped the intracellular localization domains of FtsA to both termini of the protein, and moreover, W415 is essential for the localization of the protein into
septal rings.
When overproducing FtsA
6, FtsA
13, FtsA
27, or FtsA
23
36 in
strains OV2 or OV16 at 30°C (with FtsA+ levels sufficient
to support both normal growth and division) cell morphology is
strikingly altered to a CC phenotype, while no such phenotype is
observed after overproduction of the same proteins in OV16 at 42°C
(containing no more than 1% of the FtsA+ levels). This
result suggests that an interaction between the truncated proteins and
a full-length protein might be necessary for the production of the CC
phenotype. FtsA belongs to a protein family (4, 29) that
includes members that are able to establish self-interactions. In the
case of actin this interaction is essential for its biological
function, i.e., the formation of the actin filament that is a major
component of the cytoskeleton of all eukaryotic cells (30).
The yeast two-hybrid system (14) has already been used to detect interactions among some of the components of the bacterial cell division machinery, including those of the MinCDE system (20), and those of FtsZ with SulA (20), ZipA (25), SpoIIE (22), or FtsA (12, 24, 25, 38, 40). More recently, Yan et al. (40) have reported the self-interaction of E. coli FtsA using the two-hybrid system, a result that has been confirmed in the present work. Using a protein overlay assay (5) we have also detected in vitro the interaction of FtsA molecules. In these assays biotinylated FtsA was used at a concentration of 2.5 nM in the liquid phase. As this concentration is much lower than the intracellular concentration of FtsA, estimated to be around 100 nM when assuming that 150 molecules are contained in each E. coli cell (36), the observed interaction falls well within the expected physiological range.
As discussed by Yan et al. (40) this interaction might be unique to E. coli FtsA, because in the yeast two-hybrid system, the Staphylococcus aureus FtsA molecules do not interact. But given that the strength of the interaction measured for E. coli FtsA falls in the lower range of the two-hybrid assay (11 Miller units for the wild-type proteins), it is possible that if the S. aureus FtsA interaction is slightly weaker than the E. coli one, it might fall below the significant range of the assay.
When tested in the two-hybrid system, deletions of five or more
residues impaired the interaction with the wild-type protein, showing
that the carboxy terminus of the protein is important for the
self-interaction. Although they did not interact in the yeast
two-hybrid assay we could nevertheless detect binding of biotinylated
FtsA+ to FtsA
27 when using the protein overlay assay. A
plausible interpretation of these results is that the deletion produces a decrease in the binding affinity between the wild type and the mutant
protein, weakening the interaction below the detection threshold of the
two-hybrid assay. This might be the reason also for the CC phenotype
being expressed only when the truncated proteins are produced at high
levels. These alterations of the interaction properties observed in
carboxy-terminally truncated FtsA
proteins (lacking five residues or
more) are accompanied by the simultaneous loss of their function in
E. coli division, as evidenced by their inability to
complement ftsA mutants D2 and OV16.
Each truncated protein species was able to interact with itself and
with other truncated FtsA proteins with the exception of FtsA
1. This
shows that truncation of the carboxy terminus does not result in an
extreme change in the protein structure, as the mutated proteins can
still self-interact. Furthermore, a comparative FTIR-CD spectroscopy
analysis of the soluble His-FtsA+ and His-FtsA
27, the
more extensive of the truncated FtsA forms analyzed, showed that their
secondary structures are similar (Table 2 and Fig. 4). This result
indicates that the deletion of the 27 last carboxy-terminal residues,
although important for the biological activity, does not affect
significantly the structure of the protein. Accordingly, FtsA
27
retained the ability to bind ATP (Fig. 5), indicating that the
structure of the ATP-binding site remains intact.
The FtsA
6, FtsA
13, and FtsA
27 proteins cannot localize into
septal rings, and they express a coiled phenotype only in the presence
of FtsA+. FtsA
5, on the other hand, is able to localize
into rings and produces coiled cells independently of the presence of
FtsA+. These data suggest that both a correct localization
of the protein in the septal ring and a correct interaction between
FtsA molecules are important for cell division. Alterations in the
interaction of FtsA might be responsible for the distorted cell shape
observed in these mutants.
We can postulate that the FtsA molecule contains domains able to establish interactions (evidence to include the carboxy terminus among them is shown) and can speculate that removal of a carboxy-terminus segment exposes one or more domains, normally masked in the wild-type protein, that may be able to establish a different and stronger interaction. Alternatively the deletion of the carboxy terminus may affect the properties of the resultant protein to modify its transport into the yeast nucleus, resulting in an alteration of the molecules available for the establishment of the interaction. This trivial explanation would be more difficult to reconcile with the apparent conservation of the protein structure in the deleted forms. In any case the loss of interaction with the wild type is accompanied by a loss of function, but the exact nature of the FtsA interactions and the molecular mechanisms responsible for the impairment of the biological function observed when the carboxy terminus of FtsA is deleted remain, nevertheless, to be discovered.
| |
ACKNOWLEDGMENTS |
|---|
We thank Alfonso Valencia and Luis Sánchez for computer analysis of the FtsA sequence, and María José Ferrándiz for the construction of pMFV plasmids. The excellent technical assistance of Pilar Palacios is acknowledged.
This work has been jointly financed in the laboratories of M.V. and J.-M.R. by EC DGXII project BIO4-CT96-0122. Additional funds granted to M.V. were from project BIO97-1246 from Plan Nacional de I+D (Ministerio de Educación y Cultura, Spain). J.M. and S.R. were supported by fellowships from the Comunidad Autónoma de Madrid.
| |
FOOTNOTES |
|---|
* Corresponding author. Mailing address: Centro Nacional de Biotecnología, Consejo Superior de Investigaciones Científicas, Campus de Cantoblanco, 28049 Madrid, Spain. Phone: 3491 585 46 99. Fax: 3491 585 45 06. E-mail: mvicente{at}cnb.uam.es.
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