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Journal of Bacteriology, February 2000, p. 764-770, Vol. 182, No. 3
0021-9193/00/$04.00+0
Copyright © 2000, American Society for Microbiology. All rights reserved.
Biochemical Identification and Biophysical
Characterization of a Channel-Forming Protein from
Rhodococcus erythropolis
Thomas
Lichtinger,
Gila
Reiss, and
Roland
Benz*
Lehrstuhl für Biotechnologie,
Biozentrum der Universität Würzburg, D-97074
Würzburg, Germany
Received 3 June 1999/Accepted 3 November 1999
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ABSTRACT |
Organic solvent extracts of whole cells of the gram-positive
bacterium Rhodococcus erythropolis contain a
channel-forming protein. It was identified by lipid bilayer experiments
and purified to homogeneity by preparative sodium dodecyl sulfate
(SDS)-polyacrylamide gel electrophoresis (PAGE). The pure protein had a
rather low molecular mass of about 8.4 kDa, as judged by SDS-PAGE.
SDS-resistant oligomers with a molecular mass of 67 kDa were also
observed, suggesting that the channel is formed by a protein oligomer.
The monomer was subjected to partial protein sequencing, and 45 amino acids were resolved. According to the partial sequence, the sequence has no significant homology to known protein sequences. To check whether the channel was indeed localized in the cell wall, the cell
wall fraction was separated from the cytoplasmic membrane by sucrose
step gradient centrifugation. The highest channel-forming activity was
found in the cell wall fraction. The purified protein formed large
ion-permeable channels in lipid bilayer membranes with a single-channel
conductance of 6.0 nS in 1 M KCl. Zero-current membrane potential
measurements with different salts suggested that the channel of
R. erythropolis was highly cation selective because of
negative charges localized at the channel mouth. The correction of
single-channel conductance data for negatively charged point charges
and the Renkin correction factor suggested that the diameter of the
cell wall channel is about 2.0 nm. The channel-forming properties of
the cell wall channel of R. erythropolis were compared with
those of other members of the mycolata. These channels have common
features because they form large, water-filled channels that contain
net point charges.
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INTRODUCTION |
Rhodococcus erythropolis
is a member of the genus Rhodococcus that belongs to the
mycolata, a broad and diverse group of mycolic acid-containing
actinomycetes (7, 11, 16, 31, 36). Common to all these
bacteria is the mycolic acid layer on the surface of the cells. The
mycolic acids either are covalently bound to the
peptidoglycan-arabinogalactan skeleton of the cell wall or are
extractable (11, 12, 23, 37, 38). The chain length of these
two-branch, 3-hydroxylated fatty acids varies considerably within the
mycolic-acid-containing taxa. Thus, especially long mycolic acids have
been found in mycobacteria (60 to 90 carbon atoms); they are medium in
size in nocardiae (46 to 58 carbon atoms) and small in rhodococci (30 to 54 carbon atoms) and corynebacteria (22 to 38 carbon atoms) (6,
11, 14, 20, 22, 23, 29, 38). Besides mycolic acids, the cell wall
of R. erythropolis also contains other free lipids, such as
trehalose dimycolates, glycosyl monomycolates, and peptidolipids
(17, 18, 38). The mycolic acids and free lipids are arranged
perpendicular to the cell surface (22, 24), suggesting that
they could form a membrane-like structure. At least in mycobacteria,
the mycolic acid layer clearly forms a considerable permeability
barrier for the diffusion of hydrophilic solutes (6, 15,
28).
Rhodococci are slow-growing mycolata mostly found in the soil. Some of
them are either animal or human pathogens, such as Rhodococcus
bronchialis or Rhodococcus equi (10).
R. erythropolis is not considered a pathogenic organism,
although it may be present in human immunodeficiency virus infections
(42). Rhodococci are, in general, more susceptible to
antibiotic action than mycobacteria and nocardia, but they are less
sensitive to drugs that inhibit mycolic acid and lipoarabinomannan
biosynthesis (9, 38). If the idea of the cell wall of
rhodococci being an outer lipid permeability barrier for hydrophilic
compounds is accepted, the question arises as to how these molecules
cross the cell wall. The cell wall of certain rhodococci contains up to
10% protein by weight (8). However, with a few exceptions
(1), the function of the cell wall proteins is not known so
far. It has been predicted, however (38), that rhodococci
must contain cell wall porins similar to those of other members of the
group of mycolic-acid containing actinomycetes, such as nocardia
(33, 34), mycobacteria (39, 40, 41), and
corynebacteria (19). In the cell wall of these bacteria,
channels have been identified; their function but not their structures
seem to be similar to those of their gram-negative counterparts. In
this study, we identified the permeability pathway in the mycolic acid
layer of R. erythropolis as a 67-kDa oligomer of a small
protein with a molecular mass of about 8.4 Da; according to partial
sequencing of 45 amino acids, this protein has no homology to known
proteins. The properties of the cell wall channel were investigated by
use of the lipid bilayer assay. According to the results of
electrophysiology studies, the cell wall channel of R. erythropolis is wide and water filled. It is mainly permeable for
cations because of the presence of negatively charged groups at the
channel mouth.
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MATERIALS AND METHODS |
Bacterial strain and growth conditions.
R.
erythropolis ATCC 15592 was grown in batch cultures in 400 ml of
Luria-Bertani or double yeast tryptone (DYT) medium at 30°C for 1 to
2 days.
Isolation and purification of the channel-forming protein from
the cell wall.
The cells were harvested by centrifugation (10,000 rpm for 10 min in a Beckman J2-21M/E centrifuge [rotor JA20]) and
washed once in 10 mM Tris-HCl (pH 8). We used the same method as that used for the extraction of the cell wall channel of
Corynebacterium glutamicum (18). For this
extraction, about 2 g of centrifuged cells was extracted with 16 ml of a 1:2 mixture of chloroform-methanol. The duration of the
extraction was about 2 h at room temperature (20°C) with
stirring in a closed container to avoid the loss of chloroform. Cells
and the chloroform-methanol solution were centrifuged for about 10 min
(10,000 rpm in a Beckman J2-21M/E centrifuge [rotor JA20]). The
pellet was extracted a second time with 4 ml of a 1:2 mixture of
chloroform-methanol, and the mixture was centrifuged again. The pellet
was discarded. The supernatants of both extractions contained the
channel-forming activity. They were combined (20 ml) and were mixed
with 36 ml of ice-cold ether. The mixture was kept on ice for 2 h.
The precipitated protein was dissolved in a solution containing 0.4%
lauryl dimethyl amine oxide and 10 mM Tris-HCl (pH 8) and inspected for
channel-forming activity.
Isolation of the cell wall by sucrose density
centrifugation.
The cell wall of R. erythropolis was
isolated in a manner similar to that used previously to separate the
cytoplasmic membrane and the cell wall of Mycobacterium
chelonae (39) and of C. glutamicum (26). In brief, the cells were harvested by centrifugation
and washed once in 10 mM Tris-HCl (pH 8). The cells were then passed three times through a French pressure cell at a gauge pressure of 900 lb/in2 (cell pressure, 13,000 lb/in2). Unbroken
cells were removed by centrifugation at 5,000 × g for
15 min. The supernatant was pelleted by centrifugation at 170,000 × g for 90 min. The pellet containing the cell
wall and the cytoplasmic membrane was resuspended in 2 ml of 10 mM
Tris-HCl (pH 8) and applied to a sucrose step gradient of 30% (3 ml),
40% (4 ml), and 70% (3 ml) sucrose. The gradient was centrifuged at 170,000 × g for 16 h. Eight fractions of 1 ml
were collected from top to bottom. Fraction 3 contained most of the
cytoplasmic membrane, and fraction 7 contained most of the cell wall
(26).
SDS-PAGE.
Sodium dodecyl sulfate (SDS)-polyacrylamide gel
electrophoresis (PAGE) was performed as described by Schägger and
von Jagow (35) with Tricine-containing gels because of the
low resolution of the normal gel system for low-molecular-mass
proteins. The gels were stained with Coomassie brilliant blue or with
silver stain (13). Preparative SDS-PAGE was used for
identification and purification of the channel-forming activity from
the organic solvent extracts of whole R. erythropolis cells.
Peptide sequencing.
The purified polypeptide with a
molecular mass of about 8 kDa was precipitated with trichloroacetic
acid to remove the detergent. The amino acid sequence of the peptide
was determined by the Edman degradation method with a gas-phase
sequencer (470A; Applied Biosystems) and online detection of the
amino acids.
Membrane experiments.
Black lipid bilayer membranes were
formed as described previously (3, 4). The instrumentation
consisted of a Teflon chamber with two aqueous compartments connected
by a small circular hole. The hole had a surface area of about 0.5 mm2. Membranes were formed across the hole by painting on a
1% solution of a mixture (molar ratio, 4:1) of diphytanoyl
phosphatidylcholine (PC) and phosphatidylserine (PS) (Avanti Polar
Lipids, Alabaster, Ala.) in n-decane.
Estimation of the channel diameter by use of the Renkin
correction factor.
Calculation of the channel size is possible
from conductance data when only cations or anions can permeate the
channel and when the ions inside the channel have the same mobility as
in the aqueous phase. It is based on the same assumptions that have previously been used for the derivation of the Renkin correction factor
for the diffusion of neutral molecules through porous filters, outer
membrane porins, and cell wall channels (27, 32, 39, 40).
The validity of the method has previously been assessed by comparing
the sizes of the cell wall channel of M. chelonae estimated by use of the Renkin correction factor and by the
vesicle-swelling assay. The results of both methods exhibit
satisfactory agreement (39, 40).
Channel size estimated from the effect of negatively charged
groups at the channel mouth.
Negative charges at the opening of an
ion channel result in substantial ionic-strength-dependent surface
potentials at the pore mouth that attract cations and repel anions.
Accordingly, they influence both single-channel conductance and
zero-current membrane potential. A quantitative description of the
effect of point charges on single-channel conductance may be given by
the treatment proposed by Nelson and McQuarrie (25). It
describes the effect of point charges on the conductance of a channel,
which is dependent on ion concentration, on the channel diameter,
and on the number of negative charges (5). A comparison of
the crystal structure of the Rhodobacter capsulatus porin
with the diameter derived from this theoretical treatment yields good
agreement (30).
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RESULTS AND DISCUSSION |
Isolation and purification of the channel-forming protein from
whole R. erythropolis cells.
Treatment of whole
C. glutamicum cells with organic solvents has been shown
to provide an elegant and simple way to isolate the channel-forming
protein from whole cells (19). We used here a similar method
for the isolation of channel-forming activity. Whole R. erythropolis cells were extracted two times with
chloroform-methanol in a ratio of 1:2. Then, protein was precipitated
with ether under cold conditions. In lipid bilayer experiments, the
pellet had a high membrane activity (see below). SDS-PAGE of the
precipitated protein demonstrated that it contained only a few
predominantly low-molecular-mass protein bands (Fig.
1A).

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FIG. 1.
(A) SDS-PAGE (10% Tricine) analysis (35) of
the purification of the cell wall channel-forming protein of R. erythropolis. The gel was stained with Coomassie brilliant blue.
Lane 1, molecular mass markers (94, 67, 43, 30, 20.1, and 14.4 kDa).
Lane 2, 400 µl of the chloroform-methanol supernatant precipitated
with ice-cold ether. The resulting pellet was solubilized at 40°C for
30 min in 5 µl of sample buffer and 5 µl of distilled water. (B)
SDS-PAGE (10% Tricine) analysis (35) of the pure cell wall
channel-forming protein of R. erythropolis obtained by
elution of the 8.4- and 67-kDa bands from preparative SDS-PAGE. The gel
was stained with Coomassie brilliant blue. Lane 1, molecular mass
markers (94, 67, 43, 30, 20.1, and 14.4 kDa). Lane 2, 100 µl of the
excised 67-kDa band precipitated with ice-cold ether. The resulting
pellet was solubilized at 40°C for 30 min in 5 µl of sample buffer
and 5 µl of distilled water. Lane 3, 100 µl of the excised 8.4-kDa
band precipitated with ice-cold ether. The resulting pellet was
solubilized at 40°C for 30 min in 5 µl of sample buffer and 5 µl
of distilled water.
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Further identification of the channel-forming protein was achieved by
excision of bands with different molecular masses from
Tricine-containing preparative SDS-polyacrylamide gels and their
extraction with 1% Genapol-10 mM Tris-HCl (pH 8) under cold
conditions
overnight. The addition of the extracts with different
molecular
masses to planar lipid bilayers resulted in a very fast
reconstitution
of channels. The highest channel-forming activities were
observed
in the low-molecular-mass region (6 to 10 kDa) and in the
high-molecular-mass
region (60 to 80 kDa). However, we also observed
some activity
in the other excised bands, indicating that they all
contained
some channel-forming protein, although probably at a very low
concentration because the activity could not be related to protein
bands. Inspection of the eluted proteins by SDS-PAGE suggested
that the
low-molecular-mass region contained a protein smear at
a molecular mass
of about 6 to 10 kDa probably because of the
high lipid content of the
chloroform-methanol extraction method
that is normally used to extract
lipids from membranes. To remove
the lipids from the eluted
low-molecular-mass protein, either
it was subjected to two-phase
precipitation (
43) or it was dissolved
in 100 µl of
chloroform-methanol (1:2) and precipitated again
with 900 µl of ether
under cold conditions. When the results of
both procedures were
inspected by SDS-PAGE, we observed two bands;
one had a molecular mass
of 8.4 kDa, and the other had a molecular
mass of 67 kDa (Fig.
1B).
When the 67-kDa band was excised again
and solubilized for 10 min at
100°C in sample buffer, only the
8.4-kDa band was visible. This
result indicated that the 67-kDa
protein was an oligomer of the 8.4-kDa
protein. It is noteworthy,
however, that both proteins, the 67-kDa
oligomer and the 8.4-kDa
monomer, were active in the lipid bilayer
assay and formed channels
with the same single-channel
distribution.
The channel is a cell wall component.
To check whether the
channel observed in the organic solvent extracts of whole R. erythropolis cells was indeed a cell wall component, we performed
sucrose density centrifugation of the cell envelopes of disrupted
cells. The eight fractions, from top to bottom of the sucrose density
gradient, were collected and assessed for the presence of channel
formation and NADH oxidase activity. The highest channel-forming
activity and the lowest NADH oxidase activity were found in fraction 7, in agreement with the previous investigation of the cell envelope of
C. glutamicum (26). It is noteworthy, however,
that small amounts of channel-forming activity were smeared over all
eight fractions, including fraction 3, which had the highest NADH
oxidase activity.
Partial sequencing of the 8.4-kDa protein.
We subjected the
8.4-kDa protein to partial sequencing starting from the N-terminal end
by Edman degradation. A total of 45 amino acids were resolved; the
sequence was
AFTTGSSKTDLAZLGDFQKIIAGLGGVLVGAVAGLLGAIGAXXXQ (X
represents an unidentified amino acid). No flanking sequences were observed, indicating that the protein was essentially free of major amounts of contaminant protein, consistent with the results of
SDS-PAGE. So far, no significant homology of the partial sequence with
other protein sequences has been found in different databases. Partial
sequencing of the 67-kDa oligomer led to the same N-terminal sequence
as that found for the 8.4-kDa monomer.
Effect of the purified 8.4-kDa protein or its 67-kDa oligomer on
the conductance of lipid bilayer membranes.
We performed
conductance measurements with lipid bilayer membranes to study the
interaction of the 8.4-kDa protein or its 67-kDa oligomer with
artificial membranes. Membranes were formed from 1% PC-PS mixtures
(molar ratio, 4:1) dissolved in n-decane. The addition of
the 67-kDa protein or the 8.4-kDa monomer dissolved in 1% Genapol at a
low concentration (100 ng/ml) to one or both sides of the lipid
membranes resulted in a strong increase in conductance, which was
approximately the same as when the same amount of the 8.4-kDa protein
or the 67-kDa protein was added to the aqueous phase. These results
probably indicate that the channel is formed by an oligomer of
about six to eight monomers because the 8.4-kDa protein alone cannot
form such a wide, water-filled channel. The results presented here and
elsewhere (19) demonstrate a substantial difference between
gram-negative bacterial porins and the cell wall porins of members of
the suborder Corynebacteriaceae. The latter can be isolated
from the cell wall with organic solvents such as chloroform-methanol
and, in contrast to gram-negative bacterial porins, do not lose their
channel-forming activity in organic solvents (19).
The conductance increase was not sudden, but it was a function of time
after the addition of the protein to a black membrane.
The time course
of the conductance increase was similar to that
described previously
for membrane proteins of the gram-negative
bacterial porin type
(
4) and for the cell wall channel of
C. glutamicum (
19). After an initial rapid increase for 15 to 20
min, the membrane conductance increased at a much slower rate.
The conductance increase occurred regardless of whether the protein
or
its oligomer was added to only one side or to both sides of
the
membranes. We found some sort of lipid specificity for the
interaction
between the 8.4-kDa protein and lipid bilayer membranes.
When PC alone
was used for membrane formation, we observed some
delay in channel
formation. When a PC-PS mixture (molar ratio,
4:1) was used, channels
formed more rapidly. The addition of other
lipids had virtually no
influence on the membrane activities of
the 8.4-kDa protein and the
67-kDa
oligomer.
Single-channel analysis.
The addition of smaller amounts of
protein eluted from either the high (67-kDa)- or the low
(8.4-kDa)-molecular-mass bands in preparative SDS-PAGE to lipid bilayer
membranes allowed the resolution of step increases in conductance (Fig.
2). These conductance steps were specific
for the presence of the protein. In particular, they were not observed
when Genapol was added alone to the aqueous phase at a much higher
concentration than that used in combination with the eluted protein.
Figure 2 shows a single-channel experiment in which we added the eluted
8.4-kDa band from preparative SDS-PAGE to a lipid bilayer membrane made
of PC-PS (molar ratio, 4:1) in n-decane. The single-channel
recording demonstrates that the conductance steps formed by the 8.4-kDa
protein had a rather long lifetime, on the time scale of minutes.
Figure 3 shows a histogram of 435 conductance steps in 1 M KCl at a membrane potential of 10 mV. The most
frequent value for the single-channel conductance of the channels was 6 nS, but we also observed some smaller conductance steps, for an unknown
reason (3 to 5 nS; Fig. 3). The smaller channels could be truncated
forms of the 6-nS channel which occurred much less frequently. It is
noteworthy that crude protein from the chloroform-methanol extracts,
the eluted protein from SDS-PAGE, and the detergent extracts of the
cell wall formed the same channels. We tested several different lipids
for bilayer formation. As in the multichannel experiments described
above, lipids had virtually no influence on the single-channel
conductance formed by the 8.4-kDa protein and the 67-kDa oligomer,
indicating that they had the same single-channel conductance in
membranes formed from different lipids.

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FIG. 2.
Single-channel recording of a PC-PS (molar ratio,
4:1)-n-decane membrane in the presence of pure 8.4-kDa
protein from the cell wall of R. erythropolis. The
aqueous phase contained 1 M KCl, 10 mM Tris-HCl (pH 8.0), and 10 ng of
cell wall protein per ml. The applied membrane potential was 10 mV; the
temperature was 20°C.
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FIG. 3.
Histogram of the probability [P(G)] for the occurrence
of a given conductivity unit observed with membranes formed of PC-PS
(molar ratio, 4:1)-n-decane in the presence of the pure
8.4-kDa protein of R. erythropolis. P(G) is the probability
that a given conductance increment G is observed in the
single-channel experiments. It was calculated by dividing the number of
fluctuations with a given conductance increment by the total number of
conductance fluctuations. The aqueous phase contained 1 M KCl and 10 mM
Tris-HCl (pH 8.0). The applied membrane potential was 10 mV; the
temperature was 20°C. The average single-channel conductance was 6.0 nS for 451 single-channel events. G is the single-channel conductance
in nanosiemens.
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The cell wall channel of R. erythropolis is large and
filled with water.
The cell wall channel of R. erythropolis was permeable to a variety of different ions. The
average single-channel conductances of the channel in the presence of 1 M solutions of LiCl, NaCl, KCl, RbCl, NH4Cl, and
KCH3COO
were 2.5, 3.5, 6.0, 6.0, 5.5, and 4.0 nS, respectively. It is noteworthy that the single-channel conductances
of different salts followed the mobility sequences of the cations in
the aqueous phase [Rb+ = K+ > Na+ > Li+ > N(CH3)4+ > N(C2H5)4+ = Tris+, corresponding to a single-channel conductance of
6.0 = 6.0 > 3.5 > 2.5 > 2.0 > 1.0 =
1.0 nS in a 1 M solution, respectively). This means that the cell wall
channel is wide and filled with water and has only a low field strength
and no small-selectivity filter (i.e., no binding site) inside, as
suggested by the fact that the large organic ions Tris+ and
N(C2H5)4+ could also
penetrate the channel. This means that its minimum diameter is
approximately 1 nm. The real diameter of the channel is probably closer
to 2 nm, as estimated from the Renkin correction factor for the
diffusion of solutes through porous filters (27, 32, 40) and
the effect of negative point charges at the channel mouth on the
single-channel conductance (see below). Figure
4 shows the best fit of the
single-channel conductance of the cell wall channel with the Renkin
correction factor times the aqueous diffusion coefficient of the
corresponding cation (27, 32, 40). The data points are given
relative to that for Rb+ (relative permeability equal to
unity), and the best fit of the relative permeability calculated from
the single-channel conductance was obtained with an r value
of 1.0 nm; this means that the diameter of the channel is 2.0 nm. The
data lie within the r value range of 0.7 to 1.5 nm, as shown
in Fig. 4. A diameter of 2 nm is very similar to those of cell wall
channels from other mycolata, despite different molecular masses of the
channel-forming proteins (see Table 1).

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FIG. 4.
Fit of the single-channel conductance data for the cell
wall channel by use of the Renkin correction factor times the aqueous
diffusion coefficients of the different cations (40). The
relative permeabilities were normalized to 1 for a radius (a) of 0.105 nm (Rb+). The single-channel conductances were normalized
to those of Rb+ and plotted against the hydrated ion radii
taken from Trias and Benz (40). The single-channel
conductances (solid circles) correspond to Li+ (0.216 nm),
Na+ (0.163 nm), K+ (0.110 nm),
NH4+ (0.110 nm),
N(CH3)4+ (0.182 nm),
N(C2H5)4+ (0.250 nm)
and Tris+ (0.321 nm), which were all used for the pore
diameter estimation (see Discussion). The fit (solid lines) is shown
for the cell wall channel of R. erythropolis, with an
r value of 1.5 nm (upper line) and an r value of
0.7 nm (lower line). The best fit of all data was achieved with an
r value of 1.0 nm (diameter, 2.0 nm) (broken line).
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Effect of point charges at the channel mouth.
When the KCl
concentration was changed in the single-channel experiments, we noticed
that the single-channel conductance was not a linear function of the
bulk aqueous concentration. Instead, a slope of about 0.5 to 0.6 was
observed on a double-logarithmic scale for the
conductance-versus-concentration curve (Fig.
5). This result indicates that surface
charge effects influence the properties of the cell wall channel. The
point charges are attached to the channels themselves, as the
experiments with different lipids clearly demonstrate. Negative charges
at the pore mouth result in substantial ionic-strength-dependent
surface potentials at the pore mouth, which attract cations and repel
anions. Accordingly, they influence both single-channel conductance and
zero-current membrane potential, and the single-channel conductance is
much larger than expected from the dimensions of the channel. A
quantitative description of the effect of the point charges on the
single-channel conductance may be given with the considerations of
Nelson and McQuarrie (25), as previously described
(5). A best fit of the data of Fig. 5 was obtained by
assuming that 2.7 negatively charged groups (total charge
[q] =
5.1 × 10
19 As) are
located at the pore mouth and that its radius is approximately 1 nm.
The data in Fig. 5 demonstrate that the influence of surface charges is
high at a low salt concentration and rather low at a high ionic
strength. This means that the negative point charges are well shielded
when the salt concentration is very high and have only a small
influence on the conductance of the channel. The negative potential at
the mouth of the channel has important implications for the function of
the cell wall channel. At a concentration of 150 mM KCl or NaCl, the
potential (
) is approximately
28 mV at the channel mouth. This
means that the concentration of monovalent cations is increased there
to 452 mM {bulk concentration, 150 mM; calculated according to
c0+ = c exp[
F/(RT)], where F is
Faraday's constant, R is the gas constant, and T is the absolute
temperature}, while the concentration of monovalent anions is
decreased to 50 mM {bulk concentration, 150 mM; calculated according
to c0
= c exp[
F/(RT)]}. This
means that under physiological conditions, the channel conducts cations
approximately nine times better than anions of the same aqueous
mobility without being really selective for cations due to the presence
of a selectivity filter for cations. Similar considerations apply to
the discussion of the zero-current membrane potential.

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FIG. 5.
Single-channel conductance of the cell wall channel of
R. erythropolis as a function of the KCl concentration in
the aqueous phase (squares). The solid line represents the fit of the
single-channel conductance data with equations 2 to 4 of Benz et al.
(5), assuming the presence of negative point charges (2.7 negative charges; q = 5.1 × 10 19
As) at the channel mouth on both sides of the membrane and assuming a
channel radius of 1.0 nm (diameter, 2.0 nm). c, concentration of
the KCl solution (molar); G, average single-channel conductance
(nanoSiemens). The broken line shows the single-channel conductance of
the cell wall channel without the effect of point charges and
corresponds to a linear function between channel conductance and bulk
aqueous concentration.
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Zero-current membrane potentials.
Further information about
the structure of the cell wall channel of R. erythropolis
was obtained from zero-current membrane potential measurements in the
presence of salt gradients. A 10-fold KCl gradient across a lipid
bilayer membrane in which about 100 to 1,000 cell wall channels were
reconstituted resulted in an asymmetry potential of about 44 mV
(positive on the more diluted side). This result indicated indeed some
preferential movement of cations over anions through the channel at a
neutral pH. Also, for other salts, such as LiCl and potassium acetate,
the zero-current membrane potentials always became positive on the more
diluted side (41 and 43 mV, respectively, for 10-fold salt gradients), although the magnitude of the potentials was somewhat dependent on the
different salts. This means that the channel was cation selective in
all of these cases. The zero-current membrane potentials were analyzed
with the Goldman-Hodgkin-Katz equation (3). The ratios of
the cation permeability, Pc, divided by the
anion permeability, Pa, for the three different
salts were highest for KCl and potassium acetate and lowest for LiCl
(Pc/Pa, 11.8, 11.7, and 10.5, respectively). This result indicated that the selectivity of the cell
wall changed somewhat with the aqueous mobility of the ions. On the
other hand, it changed considerably less than expected for a general
diffusion pore (3), a result which could mean that the cell
wall channel of R. erythropolis is indeed highly selective
for cations.
The R. erythropolis cell wall channel is voltage
dependent.
At voltages of up to about 20 mV, closing events
represented only a very small fraction of the total number of
conductance fluctuations. However, at membrane potentials of higher
than 20 mV, closing events became increasingly frequent when the
8.4-kDa protein was reconstituted in the lipid bilayer membranes. This result suggested that the cell wall channel is voltage dependent. Its
voltage dependence was studied with single-channel and multichannel experiments. Figure 6A shows the results
of experiments of the latter type. The channel-forming protein was
added at a concentration of 500 ng/ml to one side of a black
PC-PS-n-decane membrane (the cis side). After
30 min, the conductance had increased considerably. At this
point, we applied different potentials to the membrane. We first
applied positive potentials at the cis side and then applied
negative potentials. For both potentials, the membrane current
decreased in an exponential fashion, as has been shown previously for
the cell wall channel of C. glutamicum (19). This
result suggested either that the protein was reconstituted in a random
orientation in the membrane or that the channels reacted symmetrically
to the applied membrane potentials. The addition of the protein to both
sides of the membrane also resulted in a symmetric response to the
applied voltage.

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|
FIG. 6.
(A) Study of the voltage dependence of R. erythropolis cell wall porin. Cell wall channel-forming protein
(500 ng/ml) was added to the cis side of a PC-PS (molar
ratio, 4:1)-n-decane membrane, and the reconstitution of
the channels was monitored for about 30 min. Then, increasing positive
voltages (50 and 60 mV; upper traces) and negative voltages ( 50 and
60 mV; lower traces) were applied to the cis side of the
membrane, and the membrane current was measured as a function of time.
The aqueous phase contained 1 M KCl and 10 mM Tris-HCl (pH 8); the
temperature was 20°C. (B) Ratio of the conductance G at a
given membrane potential to the conductance G0
at 10 mV as a function of the membrane potential. The squares represent
the results of measurements in which R. erythropolis cell
wall porin was added to the cis side of membranes formed of
PC-PS (molar ratio, 4:1) dissolved in n-decane. The membrane
potential always refers to the cis side of the membrane. The
aqueous phase contained 1 M KCl, 10 mM Tris-HCl (pH 8.0), and 100 ng of
porin per ml; the temperature was 20°C. Means of four membranes are
shown.
|
|
The data from the experiments were analyzed in the following way. The
membrane conductance (
G), as a function of voltage
(
Vm),
was measured when the opening and closing
of channels reached
an equilibrium, i.e., after the exponential decay
of the membrane
current following the voltage step
Vm (Fig.
6A).
G was divided
by the
initial value of the conductance (
G0, which was
a linear
function of the voltage) obtained immediately after the onset
of the voltage. The data in Fig.
6B correspond to the symmetric
voltage
dependence of the cell wall porin (mean of four membranes)
when the
protein was added to the
cis side. To study the voltage
dependence in more detail, the data in Fig.
6B were analyzed by
assuming a Boltzmann distribution between the numbers of open
and
closed channels,
No and
Nc, respectively (
21):
|
(1)
|
F,
R, and
T are defined above,
n is the number of charges moving through the entire
transmembrane potential gradient for
channel gating; and
V0 is the potential at which 50% of the total
number of channels are in the closed configuration. The open/closed
ratio of the channels (
No/Nc) may be
calculated from the data
in Fig.
5 according to the following equation:
|
(2)
|
In this equation,
G is the conductance at a given
membrane potential
Vm, and
G0 and
Gmin are the
conductances at 10 mV (conductance
of the open state) and very high
potentials, respectively. The
semilogarithmic plot of the
No/Nc ratio as a function of the
transmembrane
Vm could be fitted to straight
lines (data not shown). The lines
could be used for the calculation of
the number of gating charges
n (number of charges involved
in the gating process) and the midpoint
potential
Vo (potential at which the number of open and
closed
channels is identical). The midpoint potential for the addition
of the cell wall porin to the
cis side and negative
potentials
applied to the
cis side was

36 mV, and the
midpoint potential
for the application of positive potentials to the
cis side was
30 mV, somewhat smaller. The gating charge in
both cases was close
to 1.9.
Comparison to cell wall channels of other members of the mycolata.
R. erythropolis is a member of the genus
Rhodococcus, which belongs to the mycolata, a broad and
diverse group of mycolic acid-containing actinomycetes (7, 11, 16,
31, 36). A variety of other members of the suborder
Corynebacterineae of the order Actinomycetales
within the class Actinobacteria, as recently defined
(36), contain cell wall channels (19, 33, 34, 39, 40,
41). This means that the mycolic acid layer of these bacteria
acts as a permeability barrier for hydrophilic compounds in a manner
similar to that of the outer membrane of gram-negative bacteria
(2, 6, 15, 28). Water-filled channels are needed to overcome
this permeability barrier. In fact, channel-forming proteins are
present in the mycolic acid layer of members of the suborder
Corynebacterineae. Channels have been identified in M. chelonae (39, 41), Mycobacterium smegmatis (40), Nocardia farcinica (34), and
C. glutamicum (19, 26). Common to this new class
of porins is that they are wide and filled with water and have a
channel diameter of about 2 nm. Furthermore, they are cation specific
because of the presence of negative charges at the channel mouth
(19, 39, 41). A comparison of the channel properties of the
known cell wall channels of the mycolata is given in Table
1. In particular, the
electrophysiological properties of the cell wall channels of R. erythropolis and C. glutamicum are very similar. Both
channels have the same diameter and contain negative point charges,
which limit their permeability to anions. Nevertheless, the known
partial sequences of the subunits of both channels do not show any
remarkable sequence homology, a result which probably means that
despite similar channel properties and a possibly analogous channel
architecture, the organisms are only distantly related. It is
noteworthy, however, that both sequences exhibit some indications for
the presence of
strands on the basis of secondary structure
predictions, suggesting that the channels are formed by
-barrel
cylinders.
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|
TABLE 1.
Comparison of the cell wall channel properties of
M. chelonae, M. smegmatis, N. farcinica, C. glutamicum, and
R. erythropolis
|
|
 |
ACKNOWLEDGMENTS |
This investigation was supported by a grant from the Deutsche
Forschungsgemeinschaft (Be 865/9-1) and the Fond der Chemischen Industrie.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Lehrstuhl
für Biotechnologie, Biozentrum der Universität
Würzburg, Am Hubland, D-97074 Würzburg, Germany. Phone:
49-(0)931-888-4501. Fax: 49-(0)931-888-4509. E-mail:
roland.benz{at}mail.uni-wuerzburg.de.
 |
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Journal of Bacteriology, February 2000, p. 764-770, Vol. 182, No. 3
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Copyright © 2000, American Society for Microbiology. All rights reserved.
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