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Journal of Bacteriology, April 2000, p. 1794-1801, Vol. 182, No. 7
0021-9193/00/$04.00+0
Copyright © 2000, American Society for Microbiology. All rights reserved.
The Staphylococcus aureus lrgAB Operon
Modulates Murein Hydrolase Activity and Penicillin Tolerance
Kajetan H.
Groicher,
Brian A.
Firek,
David F.
Fujimoto, and
Kenneth W.
Bayles*
Department of Microbiology, Molecular Biology
and Biochemistry, University of Idaho, Moscow, Idaho 83844-3052
Received 23 September 1999/Accepted 7 January 2000
 |
ABSTRACT |
Previous studies in our laboratory have shown that the
Staphylococcus aureus LytSR two-component regulatory system
affects murein hydrolase activity and autolysis. A LytSR-regulated
dicistronic operon has also been identified and shown to encode two
potential membrane-associated proteins, designated LrgA and LrgB,
hypothesized to be involved in the control of murein hydrolase
activity. In the present study, a lrgAB mutant strain was
generated and analyzed to test this hypothesis. Zymographic and
quantitative analysis of murein hydrolase activity revealed that the
lrgAB mutant produced increased extracellular murein
hydrolase activity compared to that of the wild-type strain.
Complementation of the lrgAB defect by providing the
lrgAB genes in trans restored the wild-type
phenotype, indicating that these genes confer negative control on
extracellular murein hydrolase activity. In addition to these effects,
the influence of the lrgAB mutation on penicillin-induced
lysis and killing was examined. These studies demonstrated that the
lrgAB mutation enhanced penicillin-induced killing of cells
approaching the stationary phase of growth, the time at which the
lrgAB operon was shown to be maximally expressed. This
effect of the lrgAB mutation on penicillin-induced killing
was shown to be independent of cell lysis. In contrast, the
lrgAB mutation did not affect penicillin-induced killing of
cells growing in early-exponential phase, a time in which
lrgAB expression was shown to be minimal. However,
expression of the lrgAB operon in early-exponential-phase
cells inhibited penicillin-induced killing, again independent of cell
lysis. The data generated by this study suggest that penicillin-induced
killing of S. aureus involves a novel regulator of murein
hydrolase activity.
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INTRODUCTION |
Murein hydrolases are a unique
family of enzymes that specifically cleave structural components of the
bacterial cell wall. They have been shown to participate in a number of
important biological processes during cell growth and division,
including daughter cell separation, cell wall growth, peptidoglycan
recycling, and turnover (1, 17, 28, 34, 35, 40). In
addition, these enzymes have been shown to contribute to the
pathogenicity of bacteria and are required for susceptibility to
antibiotics (17). Biochemical analysis of murein hydrolases
reveals that these enzymes have hydrolytic activities that are specific
for various structural components of the peptidoglycan. These include
N-acetylmuramidase, N-acetylglucosaminidase,
N-acetylmuramyl-L-alanine amidase, and endotransglycosidase activities that presumably have specific roles in
the biosynthesis and processing of the bacterial cell wall (17,
35, 40). Those murein hydrolases that lead to the destruction of
the cell wall and subsequent cell lysis are known as autolysins.
Because of the capacity to destroy the cell wall, the expression and
activity of murein hydrolases must be tightly controlled. At the
posttranscriptional level, murein hydrolase activity has been shown to
be modulated by mechanisms such as substrate modification, selective
transport, interactions with lipoteichoic acids and cationic peptides,
and cleavage by proteolytic enzymes (17, 35, 40). In
addition, a number of investigations have demonstrated that monovalent
cations may act as environmental signals that affect murein hydrolase
activity (8, 24). Tobin et al. (37) demonstrated
that the addition of NaCl to the growth medium has a differential
effect on murein hydrolase activity in Staphylococcus aureus. Cultures grown in the presence of 1.5 M NaCl exhibited a
higher rate of autolysis. However, this high concentration of NaCl
inhibited the activities of cell wall-bound murein hydrolases. In
contrast, Gilpin et al. (13) and Wong et al. (41)
demonstrated that the addition of 1.0 M NaCl to S. aureus
cultures increased cell wall turnover due to the increased activity of
the N-acetylmuramyl-L-alanine amidase.
In addition to posttranscriptional control, the expression of some
murein hydrolases has been shown to be regulated at the transcriptional
level. The expression of the Bacillus subtilis murein
hydrolase, cwlB, is dependent upon the alternative sigma factor
D (10, 22, 26, 38) and the late-growth
regulator Sin (22, 32). For S. aureus, Mani et
al. (25) reported the isolation of two transposon insertion
mutants that produced no detectable murein hydrolase activity and
exhibited negligible autolysis rates. Although the genes affected by
the transposon insertions have not been characterized, the authors
suggested that they lie within a master regulatory gene or a structural
gene responsible for the synthesis or processing of staphylococcal
murein hydrolases.
Recent studies in our laboratory have demonstrated that the virulence
factor regulators Agr and Sar also affect autolysis and murein
hydrolase activity in a manner that indicates that they play opposing
roles in the regulation of these processes (11). A mutation
in the gene encoding Agr resulted in cells that exhibited a reduced
rate of autolysis, while mutations in the Sar gene resulted in an
increased autolysis rate. Furthermore, pleiotropic effects on different
murein hydrolases were observed. These data indicate that, in addition
to regulating virulence factor expression, the Agr and Sar regulators
could play a significant role in the in vivo susceptibility of S. aureus to penicillin.
Finally, another regulatory system that has been shown to affect murein
hydrolase activity is the LytSR regulatory locus of S. aureus (5). The lytS and lytR
genes, whose predicted protein products share sequence characteristics
with sensor and response regulator proteins, respectively, form a
dicistronic operon. A lytS mutant strain exhibited an
increased propensity for spontaneous lysis, Triton X-100-induced lysis,
and altered murein hydrolase activities (5). The
lytSR locus is located immediately upstream of another
dicistronic operon containing the lrgA and lrgB
genes. Examination of lrgAB expression revealed that
transcription was positively regulated by the lytSR
regulatory locus (6), leading to the hypothesis that the
lrgA and lrgB gene products likely play some role
in cell wall metabolism.
In this study, the function of the S. aureus lrgAB operon
was examined by constructing an lrgAB null mutant and
testing this strain for murein hydrolase activity and penicillin
sensitivity. The data generated indicated that the lrgAB
gene products inhibit extracellular murein hydrolase activity and
promote penicillin tolerance.
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MATERIALS AND METHODS |
Strains and growth conditions.
The S. aureus
strains used in this study were grown in tryptic soy broth (TSB; Difco
Laboratories, Detroit, Mich.) or filter-sterilized NZY broth (3% N-Z
Amine A [Sigma Chemical Co., St. Louis, Mo.] plus 1% yeast extract
[Fisher Scientific, Fair Lawn, N.J.]), and Escherichia
coli DH5
was grown in Luria-Bertani medium (Fisher Scientific).
All bacterial cultures were grown with shaking (250 rpm) at 37°C.
Antibiotics needed for plasmid maintenance were purchased from either
Sigma Chemical Co. or Fisher Scientific and were used at the following
concentrations: kanamycin, 50 µg/ml; erythromycin, 2 µg/ml;
tetracycline, 5 µg/ml; ampicillin, 100 µg/ml; and spectinomycin, 50 µg/ml.
DNA manipulations.
Chromosomal DNA was isolated from
S. aureus by the method of Dyer and Iandolo (9).
Plasmid DNA was purified using a plasmid isolation kit from Qiagen,
Inc. (Chatsworth, Calif.) or Promega, Inc. (Madison, Wis.). Enzymes
used in the manipulation of DNA in this study were purchased from
either New England Biolabs (Beverly, Mass.) or GIBCO-BRL (Gaithersburg,
Md.). Preparation and transformation of E. coli were
accomplished using the procedure described by Inoue et al.
(18), and electroporation into S. aureus RN4220 was carried out using the method of Kraemer and Iandolo
(21).
11-mediated transduction of plasmids into S. aureus was carried out using the method of Shafer and Iandolo
(33).
Northern blot analysis.
RNA was isolated from S. aureus as described previously by Hart et al. (16).
Briefly, 10-ml aliquots of S. aureus cultures were removed,
added to 10 ml of ice-cold ethanol-acetone (1:1), and stored at
20°C until sampling was complete. This suspension was centrifuged
at 6,000 × g (at 4°C) for 15 min, and the pellet was
resuspended in 10 ml of TEN buffer (30). The suspension was
centrifuged again, and the pellet was then resuspended in 1 ml of TEN
buffer containing 2.5 M NaCl. To protoplast the cells, recombinant
lysostaphin (AMBI Inc., Tarrytown, N.Y.) was added to a final
concentration of 50 µg/ml and incubated at 37°C for 40 min. RNA was
purified by utilizing 5 ml of RNAzol-B (Tel-Test, Friendswood, Tex.) in
accordance with the manufacturer's directions.
Northern hybridization analysis was performed by denaturing 20 µg of
RNA at 65°C and separating it in a 1.0% formaldehyde-agarose gel
(30). The RNA was then transferred to a Schleicher & Schuell, Inc. (Keene, N.H.) charged nylon membrane by downward
capillary transfer (2). For the dot blot analysis, 20-µg
samples of RNA were applied to a charged nylon membrane using a dot
blot manifold. Prehybridization was carried out at 65°C in 15 ml of
hybridization buffer (5× SSC [1× SSC is 0.15 M NaCl plus 0.015 M
sodium citrate] [30], 0.02% sodium dodecyl sulfate
[SDS], 0.1% N-lauroylsarcosine, 1% Boehringer Mannheim
[Indianapolis, Ind.] blocking reagent for nucleic acid detection).
Digoxigenin (Dig)-labeled lrgAB-specific probes were
generated using the primers lrgAB-1
(5'-GCCGGATCCGAAGTGAGCCATCTATA-3') and lrgAB-2
(5'-GCCGAATTCGATAATAACAATGGCTC-3') and a Dig-dUTP PCR kit
from Boehringer Mannheim. Hybridization to the
lrgAB-specific probe was performed at 65°C for 16 h.
The membrane was then washed in 2.0× SSC-0.01% SDS at room
temperature twice for 15 min each. This was followed by two washes in
0.5× SSC-0.01% SDS at 68°C for 15 min each time. The remainder of
the detection procedure followed the protocol supplied with the
Digoxigenin kit from Boehringer Mannheim Co.
Allele replacement of the lrgAB operon.
An
lrgAB mutation was generated in RN6390 using the following
strategy. First, a 760-bp DNA fragment spanning a region 5' to
lrgA was PCR amplified using the primers PRO31
(5'-GCGAATTCGGATGAAAATGGGATCG-3') and PRO32
(5'-CCGGATCCGCTGGTTTTGATGCGTC-3') and was ligated into the
EcoRI and SmaI sites of plasmid pDG647
(15), upstream of an Em cassette. This recombinant plasmid
was designated pSKY14. Next, a 455-bp DNA fragment spanning a region 3'
to lrgB was PCR amplified utilizing the primers Sal-dn
(5'-CGGCGTCGACGGTGTCATTATTTATGCCCTAGG-3') and Pst-dn
(5'-CTATAATTGTCTGCAGGTGAACCATGTTTACG-3') and was ligated into the SalI and PstI sites of pSKY14,
downstream of the Em cassette. This plasmid, designated pSKY17, was
then digested with EcoRI and PstI to liberate the
Em cassette along with the flanking lrgA and lrgB
sequences. This 2.8-kb fragment was subsequently ligated into the
EcoRI and PstI sites of pCL52.2 (31)
to generate pSKY18. This plasmid was then transformed into S. aureus strain RN4220 by electroporation, spread onto tryptic soy
agar (TSA) plates containing erythromycin, and incubated at 30°C
overnight. The plasmid was then transferred into RN6390 by
phage-mediated transduction. This strain, designated KB344, was grown
at the nonpermissive temperature (43°C) in the presence of
tetracycline to select for cells in which the plasmid had integrated
into the chromosome via homologous recombination. To promote a second
recombination event, a single colony was inoculated into
antibiotic-free TSB medium and grown at 30°C for 5 days with 1:1,000
dilutions into fresh antibiotic-free medium each day. After the 5th
day, the culture was diluted and spread on TSA medium to yield isolated colonies. The colonies were then screened for Emr and
Tcs. Verification that the lrgA and
lrgB genes had been deleted was carried out by PCR
amplification and Southern blot analysis. The confirmed mutant strain
was designated KB345. Complementation of this strain was achieved by
PCR amplifying the lrgAB operon (without its native promoter
[see reference 6]) using primers lrgAB-1 and
lrgAB-2 (see above) and cloning the resulting fragment into the
EcoRI and BamHI sites of the gram-positive
expression vector pRB374 (4). This placed the expression of
the lrgAB operon under the control of the constitutively
expressed, vegetative promoter originating from B. subtilis.
Penicillin sensitivity assays.
The sensitivity of S. aureus strains to penicillin was assessed by inoculating single
colonies into 3 ml of NZY medium and incubating them at 37°C with
antibiotic selection for the pRB374 plasmid constructs. Following
overnight growth, the cells were pelleted at 6,000 × g
for 5 min, washed twice in 3 ml of NZY medium, and then resuspended in
3 ml of NZY medium. This antibiotic-free culture was diluted 1:100 in
NZY medium and grown at 37°C with shaking at 250 rpm to
early-exponential phase (~60 Klett units) or late-exponential phase
(~300 Klett units). Penicillin G (Sigma Chemical Co.) was added to a
concentration of 0.4 µg/ml, equivalent to 20 times the MIC for
RN6390. Incubation of the cultures was continued, and the culture
turbidity was measured using a Klett-Summerson colorimeter (filter no.
60) every 30 min for a total of 8 h. In addition, 100-µl
aliquots were taken every hour and diluted, and viable cells were
quantified using the track dilution method (19).
Zymographic analysis.
Zymographic analysis of extracellular,
cell wall-associated, and intracellular murein hydrolases from strains
grown in filter-sterilized NZY medium was carried out essentially as
described by Qoronfleh and Wilkinson (29). Extracellular
murein hydrolases were isolated by pelleting 15 ml of a 17-h culture at
6,000 × g for 15 min at 4°C. The supernatant was
filter sterilized and concentrated 100-fold using a Centricon-3
concentrator (Amicon, Beverly, Mass.). To obtain cell wall-associated
and intracellular murein hydrolases, the pellet obtained as described
above was resuspended in 25 ml of 0.01 M KPO4 (pH 7.0) and
split into two portions. The cell wall-associated murein hydrolases
were isolated by first washing one of the above cell suspensions twice
in 25 ml of 0.01 M KPO4 (pH 7.0) and then centrifuging at
6,000 × g for 15 min at 4°C. This washed pellet was
then resuspended in 25 ml of 0.01 M KPO4 (pH 7.0) and
stored overnight at
20°C. Upon thawing at room temperature, the
suspension was centrifuged at 16,000 × g for 15 min at
4°C. The pellet obtained was then resuspended in a 3 M
LiCl2 solution and shaken at 300 rpm at 4°C for 10 min.
The cells were pelleted again by centrifugation at 27,000 × g for 10 min. The supernatant was then dialyzed overnight at 4°C
against 0.01 M KPO4 (pH 7.0) and concentrated 10-fold in a
Centricon-3 concentrator. Intracellular murein hydrolases were obtained
by pelleting the other cell portion as described above and then
resuspending in 2.5 ml of SMMP (7) in a 15-ml Falcon tube.
The cells were protoplasted by adding lysostaphin to a final
concentration of 100 µg/ml and incubating at 37°C for 30 min. To
eliminate any residual lysostaphin, the protoplasts were further
diluted with an additional 2.5 ml of SMMP and centrifuged at room
temperature for 10 min at 2,000 × g. The cells were
gently resuspended in 5 ml of SMMP and pelleted again as above. The
cells were then resuspended in 2.5 ml of 0.01 M KPO4 (pH
7.0) and lysed by passing several times through an 18-gauge hypodermic
needle. The cellular debris was removed by centrifugation at
16,000 × g for 15 min at 4°C.
The concentration of total proteins present in each preparation was
determined using the Bradford assay (Bio-Rad, Hercules,
Calif.)
according to the manufacturer's directions. A 15-µg aliquot
of each
preparation was diluted in an equal volume of SDS reducing
sample
buffer (Bio-Rad) and loaded onto an SDS-15% polyacrylamide
gel
containing either
Micrococcus luteus (Sigma Chemical Co.)
or
autoclaved and lyophilized
S. aureus cells at a
concentration
of 1.0 mg/ml. Following electrophoretic separation of the
murein
hydrolases, the proteins were allowed to hydrolyze the embedded
bacterial cells by incubation of the gel in a 1% Triton X-100-25
mM
Tris-HCl (pH 8.0) buffer overnight at 37°C. After this incubation,
the gel was stained using a 1% methylene blue solution and destained
in water. Following destaining, the gel was photographed over
a light
box. White bands in the gel (zones of hydrolysis) indicated
regions of
murein hydrolase
activity.
Cell wall hydrolysis assays.
To quantify the amount of
hydrolysis observed in the zymographic analysis, cell wall hydrolysis
assays were performed essentially as described by Mani et al.
(25). Briefly, 100 µg of enzyme extract was added to a
suspension of autoclaved and lyophilized S. aureus cells
(1.0 mg/ml) in 100 mM Tris-HCl (pH 8.0) and incubated at 37°C with
shaking (250 rpm). Turbidity measurements were taken at 30-min
intervals with a Klett-Summerson colorimeter utilizing a no. 60 red filter.
 |
RESULTS |
Studies in our laboratory have revealed the presence of an
S. aureus regulatory system, termed LytSR, which is involved
in the regulation of murein hydrolase activity (5). The
consequences of disrupting the LytSR genes include increased
spontaneous and Triton X-100-induced lysis, altered murein hydrolase
activity, and loss of expression of a dicistronic operon containing the lrgA and lrgB genes (5, 6). As shown
in Fig. 1, the LytSR system also affects
lysis induced by penicillin. S. aureus strains 8325-4 and
KB300 were grown to early-exponential phase and then treated with 0.4 µg of penicillin/ml at a concentration equivalent to 20 times the MIC
for 8325-4. The turbidity of both cultures declined shortly after the
addition of penicillin, but that of the KB300 culture declined to a
much greater extent. Measurements of culture viability corresponded
with the increased level of penicillin-induced lysis exhibited by KB300
(unpublished results). These data demonstrate that, in addition to
exhibiting increased Triton X-100-induced lysis (5), the
KB300 strain also exhibits increased penicillin-induced lysis compared
to the parental strain.

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FIG. 1.
Penicillin-induced lysis of KB300. S. aureus
strain 8325-4 (filled circles) and KB300 (open circles) were grown to
early-exponential phase and treated with penicillin (arrow). Turbidity
measurements of the cultures were performed every hour for 8 h
after the addition of penicillin. Data are representative of
experiments performed three times.
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Generation of an lrgAB mutant.
Based on previous
data (6) and on the findings described above, it was
hypothesized that the lrgA and lrgB gene products affect, in some way, the activity of murein hydrolases produced by
S. aureus and/or the sensitivity of the bacteria to
penicillin. To test this hypothesis, an lrgAB deletion
mutant derivative of RN6390 (designated KB345) was generated by
replacing these genes with an erythromycin resistance cassette. As
shown in Fig. 2 (lanes 4 and 5), the
deletion of the lrgAB operon in strain KB345 resulted in the
loss of production of the previously identified 1.2- and 0.8-kb
lrgAB- and lrgB-specific transcripts,
respectively (6). The production of these transcripts could
be restored by introducing an lrgAB expression plasmid,
pRB-lrgAB, into KB345 (Fig. 2, lane 6). Furthermore, the presence of
pRB-lrgAB in RN6390 increased the lrgAB transcripts (Fig. 2,
lane 3) to levels greater than that observed in either of the control
strains (Fig. 2, lanes 1 and 2), indicating that the lrgAB
transcripts are overexpressed in this strain.

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FIG. 2.
Northern blot analysis of the lrgAB mutant
and complemented strains. RNA was isolated from S. aureus
strains, separated in a 1.0% formaldehyde-agarose gel, and subjected
to Northern blot analysis using an lrgAB-specific probe.
Lanes: 1, RN6390; 2, RN6390(pRB374); 3, RN6390(pRB-lrgAB); 4, KB345; 5, KB345(pRB374); 6, KB345(pRB-lrgAB). The RNAs detected correspond to the
1.2-kb lrgAB-encoding transcripts and the 0.8-kb
lrgB-encoding transcripts as previously described
(6).
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Initial testing of the KB345 strain revealed that the
lrgAB
mutation did not alter the sensitivity of the strain to Triton
X-100-induced lysis or the morphological features of individual
cells
(unpublished results) as observed with the
lytSR mutant,
KB300 (
5). Furthermore, the growth rate of KB345 was
identical
to that of the parental strain (unpublished results). To
determine
if the
lrgAB mutation affects murein hydrolase
activity, proteins
were isolated from stationary-phase cultures and
analyzed by zymography
using either
M. luteus (Fig.
3A) or
S. aureus (Fig.
3B)
cells
as a substrate. Interestingly, the KB345 strain was shown to
produce
increased levels of several extracellular murein hydrolases
(Fig.
3, lanes 4) compared to the parental strain, RN6390 (Fig.
3,
lanes
1), using either substrate. As shown in Fig.
3, complementation
of this mutation by supplying the
lrgAB operon in
trans resulted
in a reduction in the overall murein
hydrolase activity produced
(lanes 6) compared to that in the KB345
control strain (lanes
5); this reduced level was similar to that
produced by RN6390
(lanes 1) and RN6390(pRB374) (lanes 2). The
overexpression of
lrgAB in RN6390 (Fig.
3, lanes 3) resulted
in decreased extracellular
murein hydrolase activity compared to that
in the RN6390 control
strains (Fig.
3, lanes 1 and 2). No differences
between the activities
of murein hydrolases isolated from the cell
wall-associated fraction
and those isolated from the intracellular
fraction were observed
(unpublished results).

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FIG. 3.
Zymographic analysis of the lrgAB mutant.
Extracellular proteins were isolated, and 15 µg of each was separated
in SDS-polyacrylamide gel electrophoresis gels containing 1.0 mg of
either M. luteus (A) or S. aureus (B) cells/ml.
Murein hydrolase activity was detected by incubation overnight at
37°C in a buffer containing Triton X-100, followed by staining with
methylene blue. Lanes: 1, RN6390; 2, RN6390(pRB374); 3, RN6390(pRB-lrgAB); 4, KB345; 5, KB345(pRB374); 6, KB345(pRB-lrgAB).
Molecular size markers (in kilodaltons) are indicated to the left of
each gel.
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To quantify the observations of the zymographic analysis, cell wall
hydrolysis assays were performed by preparing a suspension
of killed
S. aureus cells in a Tris-HCl buffer, adding 100-µg
portions of extracellular murein hydrolase extracts, and monitoring
the
decrease in the suspension's turbidity over time. As shown
in Fig.
4, KB345 extracellular murein hydrolases
caused a 42%
decrease in turbidity after 6 h of incubation,
compared to a 34%
decrease with RN6390 extracellular murein
hydrolases. Furthermore,
the expression of pRB-lrgAB in KB345 caused a
33% decrease in
turbidity after 6 h, similar to that in the
parental strain and
consistent with the zymographic analysis. These
hydrolysis assays
also confirmed the observation that the presence of
pRB-lrgAB
in RN6390 reduced the level of extracellular murein hydrolase
secreted by this strain. Extracellular murein hydrolases from
RN6390(pRB-lrgAB) were capable of causing a 27% decrease in
turbidity
after 6 h, compared to a reduction of 34% with
extracellular murein
hydrolases from RN6390 containing the control
plasmid. These results,
along with the zymographic analysis,
demonstrate that expression
of the
lrgAB operon results in a
reduction in extracellular murein
hydrolase activity produced by
S. aureus.

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FIG. 4.
Quantitative murein hydrolase assays of the
lrgAB mutant. Aliquots (100 µg) of the extracellular
proteins used in Fig. 3 were added to a 1-mg/ml suspension of S. aureus cells, and the turbidity was monitored for 6 h.
Strains used in this analysis were RN6390(pRB374) ( ),
RN6390(pRB-lrgAB) ( ), KB345(pRB374) ( ), and KB345(pRB-lrgAB)
( ). A negative control ( ) in which no murein hydrolase was added
to the cell suspension was also performed.
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Penicillin sensitivity assays.
As demonstrated in Fig. 1, the
LytSR regulatory system affected the sensitivity of S. aureus to penicillin. Thus, to examine the role that the
LytSR-regulated lrgAB operon might have in response to
exposure to penicillin, lysis and viability measurements of the KB345
strain after exposure to this antibiotic were performed. In these
assays, penicillin G (20 times the MIC) was added to early-exponential-phase S. aureus cultures (~60 Klett
units) and the culture lysis and viability were monitored over 8 h. As shown in Fig. 5, neither the lytic
(Fig. 5A) nor the killing (Fig. 5B) effects of penicillin were affected
by the absence of the lrgAB operon. The mutant and wild-type
strains exhibited similarly reduced viability over the course of this
assay, resulting in a reduction of approximately 75% in viability
after 4 h. However, the presence of pRB-lrgAB in RN6390 or KB345
resulted in a marked increase in these strains' tolerance to
penicillin (Fig. 5B); they exhibited only an approximately 25%
decrease in viability after 4 h. In contrast, the presence of this
plasmid had no effect on the lytic response to penicillin (Fig. 5A).

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FIG. 5.
Effects of penicillin on S. aureus strains.
(A and B) Penicillin was added to early-exponential-phase S. aureus cultures (~60 Klett units), and turbidity measurements
(A) were performed every hour for 8 h. Viable cell counts (B) were
determined by diluting aliquots of the cultures and plating them on TSA
medium. (C and D) Penicillin was added to late-exponential-phase
S. aureus cultures (~300 Klett units), followed by
turbidity (C) and viable cell count (D) measurements as described
above. The S. aureus strains used in this analysis are
RN6390(pRB374) ( ), RN6390(pRB-lrgAB) ( ), KB345(pRB374) ( ), and
KB345(pRB-lrgAB) ( ). Data are representative of experiments
performed at least three times.
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Based on the observations that overexpression of the
lrgAB
operon affected penicillin tolerance while the deletion of this
operon
had no apparent effect, we hypothesized that these genes
may not be
expressed efficiently during the early-exponential
phase of growth,
when penicillin was added. If this hypothesis
is correct, the KB345
mutant would not be expected to exhibit
differences in penicillin
sensitivity during this growth phase,
as observed. In fact, the results
of a primer extension analysis
of the
lrgAB transcription
start site suggested that more
lrgAB transcripts are present
in stationary-phase RNA than in exponential-phase
RNA (
6).
To confirm these results, RNA was collected from growing
cultures of
S. aureus RN6390 at various time points and subjected
to dot
blot analysis using an
lrgAB-specific probe (Fig.
6A).
A significant increase in the amount
of
lrgAB transcripts was
detected between 4 and 6 h
(Fig.
6), indicating that these genes
are maximally expressed as the
cells approach stationary phase
(Fig.
6B). Quantification of the
signals generated revealed that
lrgAB expression in
early-exponential-phase cells was only 15%
that of cells in the
late-exponential phase (Fig.
6B).

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FIG. 6.
Dot blot analysis of lrgAB expression. (A)
RNA was isolated from S. aureus RN6390 grown to various
times throughout the growth cycle and applied to nitrocellulose using a
dot blot apparatus. The RNA was hybridized to an
lrgAB-specific probe. (B) Data from the dot blot analysis
shown in panel A were quantified and plotted next to the S. aureus growth curve. Maximal lrgAB expression was
observed at the transition between the exponential and stationary
phases of growth (6 h).
|
|
In light of the finding that the
lrgAB operon is maximally
expressed as the cells are approaching stationary phase, it was
of
interest to ask whether phenotypic differences in penicillin
sensitivity could be detected in late-exponential-phase cells.
Although
bacteria are intrinsically more resistant to penicillin
as they enter
the stationary phase of growth (
20), reproducible
differences in sensitivity were observed. As shown in Fig.
5D,
the
RN6390 culture exhibited a viability 8 h after the addition
of
penicillin that was 383% that of the viability when penicillin
was
added. In contrast, the mutant, KB345, exhibited a viability
that was
only 220% higher 8 h after the addition of penicillin.
As shown
in Fig.
5D, the decreased tolerance of KB345 to the killing
effects of
penicillin could be increased to wild-type levels by
the presence of
pRB-lrgAB in this strain, indicating that the
mutation could be
functionally complemented. Again, the presence
of
lrgA and
lrgB did not affect the lytic response of the cells
to
penicillin (Fig.
5C), indicating that the effects of these
genes on
penicillin-induced killing were independent of murein
hydrolase
activity.
 |
DISCUSSION |
In this study, the function of the S. aureus lrgAB
operon was investigated. An earlier investigation by this laboratory
suggested the involvement of lrgA and lrgB in
autolysis and murein hydrolase activity (6). Based on this
information, it was hypothesized that these genes encode murein
hydrolases and/or proteins that affect murein hydrolase activity
(6). Given the predicted extremely hydrophobic nature of the
lrgA and lrgB gene products (Fig.
7), it is unlikely that either of these
proteins contains murein hydrolase activity itself. Consistent with
this is the inability to demonstrate increased murein hydrolase
activity in E. coli or B. subtilis strains
expressing either the lrgA or the lrgB gene
(unpublished results). Thus, it is more likely that the lrgA
and lrgB gene products are involved in controlling murein
hydrolase activity at some level. In the study reported here, an
lrgAB null mutant, designated KB345, was generated to test
this hypothesis. Quantification of the extracellular murein hydrolase
activity produced by these strains demonstrated that KB345 produced
increased overall activity compared to that of the parental strain
(Fig. 4). Reintroduction of the lrgA and lrgB
genes into KB345 restored the murein hydrolase activities to wild-type
levels. It was also found that the overexpression of lrgA
and lrgB in wild-type cells resulted in a significant decrease in extracellular murein hydrolase activities. Taken together, these analyses suggest that the lrgA and lrgB
gene products may be acting in some capacity to reduce extracellular
murein hydrolase activity.

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[in a new window]
|
FIG. 7.
Hydropathy analysis of LrgA (A) and LrgB (B) according
to Kyte and Doolittle (23) with an 11-amino-acid window.
|
|
An insight into the possible role of LrgA comes from the observation
that it shares many sequence characteristics with the bacteriophage
holin family of proteins (Fig. 8).
Although there is great divergence in the amino acid sequences of
holins, several features tie the members of this group together. For
example, holins are typically small proteins comprised of 60 to 145 amino acids; LrgA is slightly larger at 148 amino acids. Members of this family also have a charge-rich, polar C terminus, a hydrophilic N
terminus, and two or three membrane-spanning domains linked by beta
turns (42). LrgA shares all of these characteristics except
that the predicted amino acid sequence indicates four membrane-spanning domains (Fig. 7A). Holins are known to play a crucial role in the life
cycles of most lytic bacteriophages by providing a timing mechanism for
release of newly formed bacteriophage particles. The prototypical
holin,
S, allows the bacteriophage-encoded murein hydrolases to gain
access to their substrate, the cell wall peptidoglycan (42).
This function is believed to be carried out by small, nonspecific
channels formed as a result of the oligomerization of individual holin
subunits in the cytoplasmic membrane of the host. Transport is Sec
independent (many bacteriophage-encoded murein hydrolases lack signal
peptides), and without an active holin, the murein hydrolases would
simply accumulate in the cytosol of the host (12).

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[in this window]
[in a new window]
|
FIG. 8.
Structural similarities between LrgA and the
prototypical holin, bacteriophage lambda S protein. The symbols used
are as previously defined by Young and Blasi (42), as
follows. The predicted charge pattern is shown above the amino acid
sequence, with K and R residues shown as positively charged and E and D
residues shown as negatively charged. Potential membrane-spanning
domains are underlined, and the highly charged carboxyl termini are
underscored with asterisks.
|
|
Regulation of holin activity is crucial, since unchecked production of
these proteins would lead to early death of the host cell by way of
cytoplasmic leakage and loss of transmembrane potential. This control
is accomplished by the utilization of a "dual-start motif"
(42). Translation of the holin mRNA can occur from either one of two methionine codons that are separated by only one or two
lysine or arginine codons. Although the two mature forms of
S differ
by only two amino-terminal amino acids (105 versus 107 residues), the
proteins carry out completely different functions. The 105-residue
polypeptide functions as the "effector" holin, while the
107-residue protein has an antagonistic activity and is termed an
"inhibitor" holin, or "antiholin." A proposed model of holin
activity has the effector holin forming a ring in the host cell
membrane by oligomerization of individual subunits (36). Oligomerization of the effector holin subunits into a completed hole is
effectively "poisoned" by the presence of antiholins. As the time
for host cell lysis approaches, it is thought that the inhibitory
effects of antiholins are relaxed (and even converted to effector holin
activity), resulting in an increase in murein hydrolase export and host
cell lysis (3, 14).
Based on the data presented in this report, we propose that LrgA, and
possibly LrgB, functions in a manner analogous to that of an antiholin
to inhibit murein hydrolase export. Although the possibility that LrgA
and LrgB are acting in another capacity (e.g., in the capacity of a
protease or a transcription factor) to reduce murein hydrolase activity
cannot be ruled out, the predicted extremely hydrophobic nature of
these proteins (see Fig. 7) suggests that these possibilities are
unlikely. If the hypothesis that LrgA and LrgB are functioning in the
capacity of an antiholin is correct, one must also predict the presence
of an effector holin in S. aureus. Since no dual-start motif
is present in lrgA, the putative effector holin would most
likely be encoded by an entirely separate gene.
An understanding of the functions of the lrgAB gene products
is particularly significant, since it would provide important new
information regarding the regulation of murein hydrolase activity. Another aspect of lrgAB function to be considered is their
potential involvement in the bactericidal effects of penicillin.
Genetic analysis of the factors necessary for penicillin-induced
killing has revealed that a complex system of physiological effects is involved in this process. Genetic studies have revealed the
participation of two independent factors in the penicillin-induced
killing of Streptococcus pneumoniae (27). The
first, an amidase, encoded by the lytA gene, was found to be
responsible for a 1-log-unit loss of culture viability every 6 h
upon exposure of exponentially growing cultures of S. pneumoniae to penicillin. An additional 3 to 4 log units of
killing were dependent on a second, yet to be identified factor that
was defective in so-called "cid" mutants (27). The cid
mutation was able to dramatically reduce the amount of
penicillin-induced killing in both wild-type and lytA mutant strains of S. pneumoniae (27), underscoring the
murein hydrolase-independent nature of this phenotype. Although the
gene(s) responsible for the cid phenotype has never been reported, it
was hypothesized that it encodes a protein analogous to
bacteriophage-encoded holins. Interestingly, similar S. aureus mutants, which are tolerant to the killing effects of
penicillin, have been previously reported (39) and also
generated by our laboratory (unpublished results).
In the present study, the expression of the lrgAB operon was
shown to inhibit penicillin-induced killing of S. aureus,
independent of cell lysis. This effect was shown to be growth phase
dependent and could be complemented by expressing lrgAB
using a constitutive promoter. It is envisioned that the effect that
lrgAB expression has on penicillin-induced killing could
occur via a mechanism directly involving the lrgAB gene
products similar to that previously proposed by Moreillon et al.
(27). Alternatively, an indirect effect of these genes on
lysis-independent killing cannot be ruled out. For example, the murein
hydrolase activity affected by lrgAB expression could be
inducing cell wall defects that lead to nonlytic death.
Finally, our laboratory is interested in identifying additional
LytSR-regulated genes, or genes that encode proteins with effector
holin-like activity. Recent studies in our laboratory have revealed the
presence of additional S. aureus genes that enhance
extracellular murein hydrolase activity and penicillin-induced killing.
Whether these genes encode proteins that contain effector holin
activity and interact with the lrgAB gene products is
currently under investigation.
 |
ACKNOWLEDGMENTS |
This work was funded by NIH grant R29-AI38901 and NSF-Idaho
EPSCoR grant EPS-9720634.
We thank Chia-Yen Lee for providing us with plasmid pCL52.2.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Department of
Microbiology, Molecular Biology and Biochemistry, College of
Agriculture, University of Idaho, Moscow, ID 83844-3052. Phone: (208)
885-7164. Fax: (208) 885-6518. E-mail: kbayles{at}uidaho.edu.
 |
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