Journal of Bacteriology, April 2000, p. 1794-1801, Vol. 182, No. 7
0021-9193/00/$04.00+0
Copyright © 2000, American Society for Microbiology. All rights reserved.
Department of Microbiology, Molecular Biology and Biochemistry, University of Idaho, Moscow, Idaho 83844-3052
Received 23 September 1999/Accepted 7 January 2000
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ABSTRACT |
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Previous studies in our laboratory have shown that the Staphylococcus aureus LytSR two-component regulatory system affects murein hydrolase activity and autolysis. A LytSR-regulated dicistronic operon has also been identified and shown to encode two potential membrane-associated proteins, designated LrgA and LrgB, hypothesized to be involved in the control of murein hydrolase activity. In the present study, a lrgAB mutant strain was generated and analyzed to test this hypothesis. Zymographic and quantitative analysis of murein hydrolase activity revealed that the lrgAB mutant produced increased extracellular murein hydrolase activity compared to that of the wild-type strain. Complementation of the lrgAB defect by providing the lrgAB genes in trans restored the wild-type phenotype, indicating that these genes confer negative control on extracellular murein hydrolase activity. In addition to these effects, the influence of the lrgAB mutation on penicillin-induced lysis and killing was examined. These studies demonstrated that the lrgAB mutation enhanced penicillin-induced killing of cells approaching the stationary phase of growth, the time at which the lrgAB operon was shown to be maximally expressed. This effect of the lrgAB mutation on penicillin-induced killing was shown to be independent of cell lysis. In contrast, the lrgAB mutation did not affect penicillin-induced killing of cells growing in early-exponential phase, a time in which lrgAB expression was shown to be minimal. However, expression of the lrgAB operon in early-exponential-phase cells inhibited penicillin-induced killing, again independent of cell lysis. The data generated by this study suggest that penicillin-induced killing of S. aureus involves a novel regulator of murein hydrolase activity.
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INTRODUCTION |
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Murein hydrolases are a unique family of enzymes that specifically cleave structural components of the bacterial cell wall. They have been shown to participate in a number of important biological processes during cell growth and division, including daughter cell separation, cell wall growth, peptidoglycan recycling, and turnover (1, 17, 28, 34, 35, 40). In addition, these enzymes have been shown to contribute to the pathogenicity of bacteria and are required for susceptibility to antibiotics (17). Biochemical analysis of murein hydrolases reveals that these enzymes have hydrolytic activities that are specific for various structural components of the peptidoglycan. These include N-acetylmuramidase, N-acetylglucosaminidase, N-acetylmuramyl-L-alanine amidase, and endotransglycosidase activities that presumably have specific roles in the biosynthesis and processing of the bacterial cell wall (17, 35, 40). Those murein hydrolases that lead to the destruction of the cell wall and subsequent cell lysis are known as autolysins.
Because of the capacity to destroy the cell wall, the expression and activity of murein hydrolases must be tightly controlled. At the posttranscriptional level, murein hydrolase activity has been shown to be modulated by mechanisms such as substrate modification, selective transport, interactions with lipoteichoic acids and cationic peptides, and cleavage by proteolytic enzymes (17, 35, 40). In addition, a number of investigations have demonstrated that monovalent cations may act as environmental signals that affect murein hydrolase activity (8, 24). Tobin et al. (37) demonstrated that the addition of NaCl to the growth medium has a differential effect on murein hydrolase activity in Staphylococcus aureus. Cultures grown in the presence of 1.5 M NaCl exhibited a higher rate of autolysis. However, this high concentration of NaCl inhibited the activities of cell wall-bound murein hydrolases. In contrast, Gilpin et al. (13) and Wong et al. (41) demonstrated that the addition of 1.0 M NaCl to S. aureus cultures increased cell wall turnover due to the increased activity of the N-acetylmuramyl-L-alanine amidase.
In addition to posttranscriptional control, the expression of some
murein hydrolases has been shown to be regulated at the transcriptional
level. The expression of the Bacillus subtilis murein
hydrolase, cwlB, is dependent upon the alternative sigma factor
D (10, 22, 26, 38) and the late-growth
regulator Sin (22, 32). For S. aureus, Mani et
al. (25) reported the isolation of two transposon insertion
mutants that produced no detectable murein hydrolase activity and
exhibited negligible autolysis rates. Although the genes affected by
the transposon insertions have not been characterized, the authors
suggested that they lie within a master regulatory gene or a structural
gene responsible for the synthesis or processing of staphylococcal
murein hydrolases.
Recent studies in our laboratory have demonstrated that the virulence factor regulators Agr and Sar also affect autolysis and murein hydrolase activity in a manner that indicates that they play opposing roles in the regulation of these processes (11). A mutation in the gene encoding Agr resulted in cells that exhibited a reduced rate of autolysis, while mutations in the Sar gene resulted in an increased autolysis rate. Furthermore, pleiotropic effects on different murein hydrolases were observed. These data indicate that, in addition to regulating virulence factor expression, the Agr and Sar regulators could play a significant role in the in vivo susceptibility of S. aureus to penicillin.
Finally, another regulatory system that has been shown to affect murein hydrolase activity is the LytSR regulatory locus of S. aureus (5). The lytS and lytR genes, whose predicted protein products share sequence characteristics with sensor and response regulator proteins, respectively, form a dicistronic operon. A lytS mutant strain exhibited an increased propensity for spontaneous lysis, Triton X-100-induced lysis, and altered murein hydrolase activities (5). The lytSR locus is located immediately upstream of another dicistronic operon containing the lrgA and lrgB genes. Examination of lrgAB expression revealed that transcription was positively regulated by the lytSR regulatory locus (6), leading to the hypothesis that the lrgA and lrgB gene products likely play some role in cell wall metabolism.
In this study, the function of the S. aureus lrgAB operon was examined by constructing an lrgAB null mutant and testing this strain for murein hydrolase activity and penicillin sensitivity. The data generated indicated that the lrgAB gene products inhibit extracellular murein hydrolase activity and promote penicillin tolerance.
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MATERIALS AND METHODS |
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Strains and growth conditions.
The S. aureus
strains used in this study were grown in tryptic soy broth (TSB; Difco
Laboratories, Detroit, Mich.) or filter-sterilized NZY broth (3% N-Z
Amine A [Sigma Chemical Co., St. Louis, Mo.] plus 1% yeast extract
[Fisher Scientific, Fair Lawn, N.J.]), and Escherichia
coli DH5
was grown in Luria-Bertani medium (Fisher Scientific).
All bacterial cultures were grown with shaking (250 rpm) at 37°C.
Antibiotics needed for plasmid maintenance were purchased from either
Sigma Chemical Co. or Fisher Scientific and were used at the following
concentrations: kanamycin, 50 µg/ml; erythromycin, 2 µg/ml;
tetracycline, 5 µg/ml; ampicillin, 100 µg/ml; and spectinomycin, 50 µg/ml.
DNA manipulations.
Chromosomal DNA was isolated from
S. aureus by the method of Dyer and Iandolo (9).
Plasmid DNA was purified using a plasmid isolation kit from Qiagen,
Inc. (Chatsworth, Calif.) or Promega, Inc. (Madison, Wis.). Enzymes
used in the manipulation of DNA in this study were purchased from
either New England Biolabs (Beverly, Mass.) or GIBCO-BRL (Gaithersburg,
Md.). Preparation and transformation of E. coli were
accomplished using the procedure described by Inoue et al.
(18), and electroporation into S. aureus RN4220 was carried out using the method of Kraemer and Iandolo
(21).
11-mediated transduction of plasmids into S. aureus was carried out using the method of Shafer and Iandolo
(33).
Northern blot analysis.
RNA was isolated from S. aureus as described previously by Hart et al. (16).
Briefly, 10-ml aliquots of S. aureus cultures were removed,
added to 10 ml of ice-cold ethanol-acetone (1:1), and stored at
20°C until sampling was complete. This suspension was centrifuged
at 6,000 × g (at 4°C) for 15 min, and the pellet was
resuspended in 10 ml of TEN buffer (30). The suspension was
centrifuged again, and the pellet was then resuspended in 1 ml of TEN
buffer containing 2.5 M NaCl. To protoplast the cells, recombinant
lysostaphin (AMBI Inc., Tarrytown, N.Y.) was added to a final
concentration of 50 µg/ml and incubated at 37°C for 40 min. RNA was
purified by utilizing 5 ml of RNAzol-B (Tel-Test, Friendswood, Tex.) in
accordance with the manufacturer's directions.
Allele replacement of the lrgAB operon. An lrgAB mutation was generated in RN6390 using the following strategy. First, a 760-bp DNA fragment spanning a region 5' to lrgA was PCR amplified using the primers PRO31 (5'-GCGAATTCGGATGAAAATGGGATCG-3') and PRO32 (5'-CCGGATCCGCTGGTTTTGATGCGTC-3') and was ligated into the EcoRI and SmaI sites of plasmid pDG647 (15), upstream of an Em cassette. This recombinant plasmid was designated pSKY14. Next, a 455-bp DNA fragment spanning a region 3' to lrgB was PCR amplified utilizing the primers Sal-dn (5'-CGGCGTCGACGGTGTCATTATTTATGCCCTAGG-3') and Pst-dn (5'-CTATAATTGTCTGCAGGTGAACCATGTTTACG-3') and was ligated into the SalI and PstI sites of pSKY14, downstream of the Em cassette. This plasmid, designated pSKY17, was then digested with EcoRI and PstI to liberate the Em cassette along with the flanking lrgA and lrgB sequences. This 2.8-kb fragment was subsequently ligated into the EcoRI and PstI sites of pCL52.2 (31) to generate pSKY18. This plasmid was then transformed into S. aureus strain RN4220 by electroporation, spread onto tryptic soy agar (TSA) plates containing erythromycin, and incubated at 30°C overnight. The plasmid was then transferred into RN6390 by phage-mediated transduction. This strain, designated KB344, was grown at the nonpermissive temperature (43°C) in the presence of tetracycline to select for cells in which the plasmid had integrated into the chromosome via homologous recombination. To promote a second recombination event, a single colony was inoculated into antibiotic-free TSB medium and grown at 30°C for 5 days with 1:1,000 dilutions into fresh antibiotic-free medium each day. After the 5th day, the culture was diluted and spread on TSA medium to yield isolated colonies. The colonies were then screened for Emr and Tcs. Verification that the lrgA and lrgB genes had been deleted was carried out by PCR amplification and Southern blot analysis. The confirmed mutant strain was designated KB345. Complementation of this strain was achieved by PCR amplifying the lrgAB operon (without its native promoter [see reference 6]) using primers lrgAB-1 and lrgAB-2 (see above) and cloning the resulting fragment into the EcoRI and BamHI sites of the gram-positive expression vector pRB374 (4). This placed the expression of the lrgAB operon under the control of the constitutively expressed, vegetative promoter originating from B. subtilis.
Penicillin sensitivity assays. The sensitivity of S. aureus strains to penicillin was assessed by inoculating single colonies into 3 ml of NZY medium and incubating them at 37°C with antibiotic selection for the pRB374 plasmid constructs. Following overnight growth, the cells were pelleted at 6,000 × g for 5 min, washed twice in 3 ml of NZY medium, and then resuspended in 3 ml of NZY medium. This antibiotic-free culture was diluted 1:100 in NZY medium and grown at 37°C with shaking at 250 rpm to early-exponential phase (~60 Klett units) or late-exponential phase (~300 Klett units). Penicillin G (Sigma Chemical Co.) was added to a concentration of 0.4 µg/ml, equivalent to 20 times the MIC for RN6390. Incubation of the cultures was continued, and the culture turbidity was measured using a Klett-Summerson colorimeter (filter no. 60) every 30 min for a total of 8 h. In addition, 100-µl aliquots were taken every hour and diluted, and viable cells were quantified using the track dilution method (19).
Zymographic analysis.
Zymographic analysis of extracellular,
cell wall-associated, and intracellular murein hydrolases from strains
grown in filter-sterilized NZY medium was carried out essentially as
described by Qoronfleh and Wilkinson (29). Extracellular
murein hydrolases were isolated by pelleting 15 ml of a 17-h culture at
6,000 × g for 15 min at 4°C. The supernatant was
filter sterilized and concentrated 100-fold using a Centricon-3
concentrator (Amicon, Beverly, Mass.). To obtain cell wall-associated
and intracellular murein hydrolases, the pellet obtained as described
above was resuspended in 25 ml of 0.01 M KPO4 (pH 7.0) and
split into two portions. The cell wall-associated murein hydrolases
were isolated by first washing one of the above cell suspensions twice
in 25 ml of 0.01 M KPO4 (pH 7.0) and then centrifuging at
6,000 × g for 15 min at 4°C. This washed pellet was
then resuspended in 25 ml of 0.01 M KPO4 (pH 7.0) and
stored overnight at
20°C. Upon thawing at room temperature, the
suspension was centrifuged at 16,000 × g for 15 min at
4°C. The pellet obtained was then resuspended in a 3 M
LiCl2 solution and shaken at 300 rpm at 4°C for 10 min.
The cells were pelleted again by centrifugation at 27,000 × g for 10 min. The supernatant was then dialyzed overnight at 4°C
against 0.01 M KPO4 (pH 7.0) and concentrated 10-fold in a
Centricon-3 concentrator. Intracellular murein hydrolases were obtained
by pelleting the other cell portion as described above and then
resuspending in 2.5 ml of SMMP (7) in a 15-ml Falcon tube.
The cells were protoplasted by adding lysostaphin to a final
concentration of 100 µg/ml and incubating at 37°C for 30 min. To
eliminate any residual lysostaphin, the protoplasts were further
diluted with an additional 2.5 ml of SMMP and centrifuged at room
temperature for 10 min at 2,000 × g. The cells were
gently resuspended in 5 ml of SMMP and pelleted again as above. The
cells were then resuspended in 2.5 ml of 0.01 M KPO4 (pH
7.0) and lysed by passing several times through an 18-gauge hypodermic
needle. The cellular debris was removed by centrifugation at
16,000 × g for 15 min at 4°C.
Cell wall hydrolysis assays. To quantify the amount of hydrolysis observed in the zymographic analysis, cell wall hydrolysis assays were performed essentially as described by Mani et al. (25). Briefly, 100 µg of enzyme extract was added to a suspension of autoclaved and lyophilized S. aureus cells (1.0 mg/ml) in 100 mM Tris-HCl (pH 8.0) and incubated at 37°C with shaking (250 rpm). Turbidity measurements were taken at 30-min intervals with a Klett-Summerson colorimeter utilizing a no. 60 red filter.
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RESULTS |
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Studies in our laboratory have revealed the presence of an
S. aureus regulatory system, termed LytSR, which is involved
in the regulation of murein hydrolase activity (5). The
consequences of disrupting the LytSR genes include increased
spontaneous and Triton X-100-induced lysis, altered murein hydrolase
activity, and loss of expression of a dicistronic operon containing the lrgA and lrgB genes (5, 6). As shown
in Fig. 1, the LytSR system also affects
lysis induced by penicillin. S. aureus strains 8325-4 and
KB300 were grown to early-exponential phase and then treated with 0.4 µg of penicillin/ml at a concentration equivalent to 20 times the MIC
for 8325-4. The turbidity of both cultures declined shortly after the
addition of penicillin, but that of the KB300 culture declined to a
much greater extent. Measurements of culture viability corresponded
with the increased level of penicillin-induced lysis exhibited by KB300
(unpublished results). These data demonstrate that, in addition to
exhibiting increased Triton X-100-induced lysis (5), the
KB300 strain also exhibits increased penicillin-induced lysis compared
to the parental strain.
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Generation of an lrgAB mutant.
Based on previous
data (6) and on the findings described above, it was
hypothesized that the lrgA and lrgB gene products affect, in some way, the activity of murein hydrolases produced by
S. aureus and/or the sensitivity of the bacteria to
penicillin. To test this hypothesis, an lrgAB deletion
mutant derivative of RN6390 (designated KB345) was generated by
replacing these genes with an erythromycin resistance cassette. As
shown in Fig. 2 (lanes 4 and 5), the
deletion of the lrgAB operon in strain KB345 resulted in the
loss of production of the previously identified 1.2- and 0.8-kb
lrgAB- and lrgB-specific transcripts,
respectively (6). The production of these transcripts could
be restored by introducing an lrgAB expression plasmid,
pRB-lrgAB, into KB345 (Fig. 2, lane 6). Furthermore, the presence of
pRB-lrgAB in RN6390 increased the lrgAB transcripts (Fig. 2,
lane 3) to levels greater than that observed in either of the control
strains (Fig. 2, lanes 1 and 2), indicating that the lrgAB
transcripts are overexpressed in this strain.
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Penicillin sensitivity assays.
As demonstrated in Fig. 1, the
LytSR regulatory system affected the sensitivity of S. aureus to penicillin. Thus, to examine the role that the
LytSR-regulated lrgAB operon might have in response to
exposure to penicillin, lysis and viability measurements of the KB345
strain after exposure to this antibiotic were performed. In these
assays, penicillin G (20 times the MIC) was added to early-exponential-phase S. aureus cultures (~60 Klett
units) and the culture lysis and viability were monitored over 8 h. As shown in Fig. 5, neither the lytic
(Fig. 5A) nor the killing (Fig. 5B) effects of penicillin were affected
by the absence of the lrgAB operon. The mutant and wild-type
strains exhibited similarly reduced viability over the course of this
assay, resulting in a reduction of approximately 75% in viability
after 4 h. However, the presence of pRB-lrgAB in RN6390 or KB345
resulted in a marked increase in these strains' tolerance to
penicillin (Fig. 5B); they exhibited only an approximately 25%
decrease in viability after 4 h. In contrast, the presence of this
plasmid had no effect on the lytic response to penicillin (Fig. 5A).
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DISCUSSION |
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In this study, the function of the S. aureus lrgAB
operon was investigated. An earlier investigation by this laboratory
suggested the involvement of lrgA and lrgB in
autolysis and murein hydrolase activity (6). Based on this
information, it was hypothesized that these genes encode murein
hydrolases and/or proteins that affect murein hydrolase activity
(6). Given the predicted extremely hydrophobic nature of the
lrgA and lrgB gene products (Fig.
7), it is unlikely that either of these
proteins contains murein hydrolase activity itself. Consistent with
this is the inability to demonstrate increased murein hydrolase
activity in E. coli or B. subtilis strains
expressing either the lrgA or the lrgB gene
(unpublished results). Thus, it is more likely that the lrgA
and lrgB gene products are involved in controlling murein
hydrolase activity at some level. In the study reported here, an
lrgAB null mutant, designated KB345, was generated to test
this hypothesis. Quantification of the extracellular murein hydrolase
activity produced by these strains demonstrated that KB345 produced
increased overall activity compared to that of the parental strain
(Fig. 4). Reintroduction of the lrgA and lrgB
genes into KB345 restored the murein hydrolase activities to wild-type
levels. It was also found that the overexpression of lrgA
and lrgB in wild-type cells resulted in a significant decrease in extracellular murein hydrolase activities. Taken together, these analyses suggest that the lrgA and lrgB
gene products may be acting in some capacity to reduce extracellular
murein hydrolase activity.
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An insight into the possible role of LrgA comes from the observation
that it shares many sequence characteristics with the bacteriophage
holin family of proteins (Fig. 8).
Although there is great divergence in the amino acid sequences of
holins, several features tie the members of this group together. For
example, holins are typically small proteins comprised of 60 to 145 amino acids; LrgA is slightly larger at 148 amino acids. Members of this family also have a charge-rich, polar C terminus, a hydrophilic N
terminus, and two or three membrane-spanning domains linked by beta
turns (42). LrgA shares all of these characteristics except
that the predicted amino acid sequence indicates four membrane-spanning domains (Fig. 7A). Holins are known to play a crucial role in the life
cycles of most lytic bacteriophages by providing a timing mechanism for
release of newly formed bacteriophage particles. The prototypical
holin,
S, allows the bacteriophage-encoded murein hydrolases to gain
access to their substrate, the cell wall peptidoglycan (42).
This function is believed to be carried out by small, nonspecific
channels formed as a result of the oligomerization of individual holin
subunits in the cytoplasmic membrane of the host. Transport is Sec
independent (many bacteriophage-encoded murein hydrolases lack signal
peptides), and without an active holin, the murein hydrolases would
simply accumulate in the cytosol of the host (12).
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Regulation of holin activity is crucial, since unchecked production of
these proteins would lead to early death of the host cell by way of
cytoplasmic leakage and loss of transmembrane potential. This control
is accomplished by the utilization of a "dual-start motif"
(42). Translation of the holin mRNA can occur from either one of two methionine codons that are separated by only one or two
lysine or arginine codons. Although the two mature forms of
S differ
by only two amino-terminal amino acids (105 versus 107 residues), the
proteins carry out completely different functions. The 105-residue
polypeptide functions as the "effector" holin, while the
107-residue protein has an antagonistic activity and is termed an
"inhibitor" holin, or "antiholin." A proposed model of holin
activity has the effector holin forming a ring in the host cell
membrane by oligomerization of individual subunits (36). Oligomerization of the effector holin subunits into a completed hole is
effectively "poisoned" by the presence of antiholins. As the time
for host cell lysis approaches, it is thought that the inhibitory
effects of antiholins are relaxed (and even converted to effector holin
activity), resulting in an increase in murein hydrolase export and host
cell lysis (3, 14).
Based on the data presented in this report, we propose that LrgA, and possibly LrgB, functions in a manner analogous to that of an antiholin to inhibit murein hydrolase export. Although the possibility that LrgA and LrgB are acting in another capacity (e.g., in the capacity of a protease or a transcription factor) to reduce murein hydrolase activity cannot be ruled out, the predicted extremely hydrophobic nature of these proteins (see Fig. 7) suggests that these possibilities are unlikely. If the hypothesis that LrgA and LrgB are functioning in the capacity of an antiholin is correct, one must also predict the presence of an effector holin in S. aureus. Since no dual-start motif is present in lrgA, the putative effector holin would most likely be encoded by an entirely separate gene.
An understanding of the functions of the lrgAB gene products is particularly significant, since it would provide important new information regarding the regulation of murein hydrolase activity. Another aspect of lrgAB function to be considered is their potential involvement in the bactericidal effects of penicillin. Genetic analysis of the factors necessary for penicillin-induced killing has revealed that a complex system of physiological effects is involved in this process. Genetic studies have revealed the participation of two independent factors in the penicillin-induced killing of Streptococcus pneumoniae (27). The first, an amidase, encoded by the lytA gene, was found to be responsible for a 1-log-unit loss of culture viability every 6 h upon exposure of exponentially growing cultures of S. pneumoniae to penicillin. An additional 3 to 4 log units of killing were dependent on a second, yet to be identified factor that was defective in so-called "cid" mutants (27). The cid mutation was able to dramatically reduce the amount of penicillin-induced killing in both wild-type and lytA mutant strains of S. pneumoniae (27), underscoring the murein hydrolase-independent nature of this phenotype. Although the gene(s) responsible for the cid phenotype has never been reported, it was hypothesized that it encodes a protein analogous to bacteriophage-encoded holins. Interestingly, similar S. aureus mutants, which are tolerant to the killing effects of penicillin, have been previously reported (39) and also generated by our laboratory (unpublished results).
In the present study, the expression of the lrgAB operon was shown to inhibit penicillin-induced killing of S. aureus, independent of cell lysis. This effect was shown to be growth phase dependent and could be complemented by expressing lrgAB using a constitutive promoter. It is envisioned that the effect that lrgAB expression has on penicillin-induced killing could occur via a mechanism directly involving the lrgAB gene products similar to that previously proposed by Moreillon et al. (27). Alternatively, an indirect effect of these genes on lysis-independent killing cannot be ruled out. For example, the murein hydrolase activity affected by lrgAB expression could be inducing cell wall defects that lead to nonlytic death.
Finally, our laboratory is interested in identifying additional LytSR-regulated genes, or genes that encode proteins with effector holin-like activity. Recent studies in our laboratory have revealed the presence of additional S. aureus genes that enhance extracellular murein hydrolase activity and penicillin-induced killing. Whether these genes encode proteins that contain effector holin activity and interact with the lrgAB gene products is currently under investigation.
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ACKNOWLEDGMENTS |
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This work was funded by NIH grant R29-AI38901 and NSF-Idaho EPSCoR grant EPS-9720634.
We thank Chia-Yen Lee for providing us with plasmid pCL52.2.
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FOOTNOTES |
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* Corresponding author. Mailing address: Department of Microbiology, Molecular Biology and Biochemistry, College of Agriculture, University of Idaho, Moscow, ID 83844-3052. Phone: (208) 885-7164. Fax: (208) 885-6518. E-mail: kbayles{at}uidaho.edu.
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