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Journal of Bacteriology, June 2001, p. 3399-3407, Vol. 183, No. 11
0021-9193/01/$04.00+0 DOI: 10.1128/JB.183.11.3399-3407.2001
Copyright © 2001, American Society for Microbiology. All rights reserved.
Identification and Characterization of a Second
Superoxide Dismutase Gene (sodM) from
Staphylococcus aureus
Michelle Wright
Valderas and
Mark E.
Hart*
Department of Molecular Biology and
Immunology, University of North Texas Health Science Center at Fort
Worth, Fort Worth, Texas 76107-2699
Received 19 January 2001/Accepted 21 March 2001
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ABSTRACT |
A gene encoding superoxide dismutase (SOD), sodM, from
S. aureus was cloned and characterized. The deduced amino
acid sequence specifies a 187-amino-acid protein with 75% identity to
the S. aureus SodA protein. Amino acid sequence comparisons
with known SODs and relative insensitivity to hydrogen peroxide and
potassium cyanide indicate that SodM most likely uses manganese (Mn) as a cofactor. The sodM gene expressed from a plasmid rescued
an Escherichia coli double mutant (sodA sodB)
under conditions that are otherwise lethal. SOD activity gels of
S. aureus RN6390 whole-cell lysates revealed three closely
migrating bands of activity. The two upper bands were absent in a
sodM mutant, while the two lower bands were absent in a
sodA mutant. Thus, the middle band of activity most likely
represents a SodM-SodA hybrid protein. All three bands of activity
increased as highly aerated cultures entered the late exponential phase
of growth, SodM more so than SodA. Viability of the sodA
and sodM sodA mutants but not the sodM mutant
was drastically reduced under oxidative stress conditions generated by
methyl viologen (MV) added during the early exponential phase of
growth. However, only the viability of the sodM sodA mutant was reduced when MV was added during the late exponential and stationary phases of growth. These data indicate that while SodA may be
the major SOD activity in S. aureus throughout all stages of growth, SodM, under oxidative stress, becomes a major source of
activity during the late exponential and stationary phases of growth
such that viability and growth of an S. aureus sodA mutant
are maintained.
 |
INTRODUCTION |
Staphylococcus aureus is
a gram-positive facultative anaerobe that typically resides on the skin
and mucous membranes of approximately 30% of healthy individuals and
up to 90% of health care workers (42). Therefore, it is
not surprising that of the estimated 2 million hospitalizations each
year that result in a nosocomial infection, S. aureus is one
of the most common causative agents (5, 15). S. aureus has the capacity to produce more than 30 secreted proteins
in the form of enzymes, immunotoxins, and cytotoxins and numerous cell
surface-associated factors that promote adherence to various tissues
and prevent attack by the host's defenses (17, 36).
Consequently, S. aureus causes numerous different kinds of
infections, ranging from skin abscesses to life-threatening
endocarditis, meningitis, and pneumonia as well as toxemias such as
scalded skin and toxic shock syndromes (42).
The skin and mucous membranes serve as the primary line of defense
against infection by S. aureus (41). However,
when this organism is introduced into the underlying tissues, the
primary defense mechanism is the professional phagocyte
(41). Polymorphonuclear leukocytes and macrophages use
toxic reactive oxygen intermediates such as superoxide and hydrogen
peroxide to aid in the killing of phagocytized bacteria (11, 22,
35). In addition, these same oxygen species are produced during
aerobic respiration and have the potential to damage DNA, protein, and
lipids (12, 18).
In order to detoxify these reactive oxygen intermediates, bacteria
produce several classes of superoxide dismutases (SODs) and catalases
that convert superoxide to hydrogen peroxide and hydrogen peroxide to
water and oxygen (for reviews, see references 13 and 40).
SODs are metalloenzymes classified by the type of metal cofactor
utilized (13, 40). In bacteria, manganese (Mn) and iron
(Fe) SODs are localized in the cytoplasm and are believed to be
important in protecting nucleic acid, proteins, and lipids from the
damaging effects of superoxide (13, 40). In gram-negative
bacteria, copper-zinc SODs reside in the periplasm, where they are
hypothesized to act upon exogenous superoxide (13, 40).
Recently, a nickel-containing SOD was isolated and the gene
subsequently cloned from Streptomyces coelicolor (20,
21).
The function of SOD in S. aureus has been presumed to be
similar to that of other bacterial SODs. However, the only studies attempting to correlate a role for this enzyme in staphylococcal disease have generated conflicting information. Mandell
(27) demonstrated that SOD activity in clinical isolates,
whether high or low, did not correlate with lethality in a mouse model
of infection. Furthermore, the differences in SOD activity did not
impair the ability of polymorphonuclear leukocytes to kill
intracellular staphylococci. In contrast, Kanafani and Martin
(19) demonstrated that virulent strains of S. aureus from patients with confirmed staphylococcal disease
exhibited significantly higher levels of SOD activity than nonvirulent
isolates from patients who exhibited no staphylococcal disease. In
addition, when these strains were compared in a neonatal mouse model,
the mice inoculated with virulent strains demonstrated significantly
lower weight gain than mice inoculated with nonvirulent strains
(19).
Recently, Watson et al. (43) reported the isolation of a
number of transposon mutants of S. aureus with an impaired
ability to survive long-term starvation. One of these mutations was
determined to be within a gene belonging to the Mn family of SODs,
sodA (43). Upon further examination, it was
determined that S. aureus produces three bands of SOD
activity, as assessed by nondenaturing polyacrylamide gel
electrophoresis (7). The two lowest-migrating bands of activity were absent in the sodA transposon mutant. Amino
acid sequence analysis, along with a demonstrated dependence upon Mn for activity and relative resistance to hydrogen peroxide, led to the
conclusion that the SodA of S. aureus is most likely a Mn-SOD (7). Previous to the Clements et al.
(7) study, Poyart et al. (33) used degenerate
primers designed from conserved regions of several gram-positive Mn-SOD
genes to isolate a PCR product from S. aureus that appeared
to represent ~85% of a putative sod gene. The nucleic
acid sequence of this gene, showed only 71% identity with the
sodA gene isolated by Clements et al. (7), indicating that S. aureus most likely contains two SOD genes.
In this study, we report the cloning and characterization of a second
gene for SOD activity in S. aureus. The gene has been designated sodM, due to its amino acid similarities to the
Mn family of SODs and its insensitivity to hydrogen peroxide and potassium cyanide, a characteristic of Mn-SODs. Results from this study
indicate that the two sod genes in S. aureus
account for three distinct SOD activities; SodM, SodA, and a hybrid
SodM-SodA form, which represents a SOD profile not previously
recognized in gram-positive bacteria. Expression of sodM was
greatest under high-aeration growth conditions during the late
exponential and postexponential phases of growth, and SodM provided
protection from oxidative stress for a sodA mutant strain of
S. aureus.
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MATERIALS AND METHODS |
Bacterial strains and growth conditions.
Bacterial strains
used in this study are listed in Table 1.
Strains were routinely grown overnight (15 to 18 h) in tryptic soy
broth (TSB; Difco Laboratories, Detroit, Mich.) at 37°C with rotary
aeration (180 rpm) or on TSA plates (TSB containing 1.5% agar). To
examine the effects of high and low aeration, S. aureus was
grown essentially as described by Clements et al. (7). High aeration was achieved by using a flask-to-volume ratio of 25 with
rotary aeration (225 rpm), while low aeration was achieved by using a
flask-to-volume ratio of 2.5 with rotary aeration (125 rpm). Strains of
Escherichia coli were routinely grown at 37°C with rotary
aeration (225 rpm) in either Luria-Bertani (LB) broth or M63 minimal
medium (30) with the appropriate antibiotic selection. Solid media consisted of either LB or M63 containing 1.5% agar. Antibiotic-resistant S. aureus strains were selected with
and maintained on either erythromycin, tetracycline, or chloramphenicol (Sigma Chemical Co., St. Louis, Mo.) at 5 µg/ml, while
antibiotic-resistant E. coli strains were grown in the
presence of carbenicillin (Sigma) at 100 µg/ml.
Cloning of sodM. (i) Amplification by PCR.
Chromosomal DNA was isolated from S. aureus using the method
of Dyer and Iandolo (10). Oligonucleotide primers
(5'-TTAATTCTCTTTAAAAGCGGGAAA-3' and
5'-GGGACATTCATCAACTTTTATCAG-3') were designed using
sequences from the S. aureus DNA databases maintained by The
Institute for Genomic Research (http://www.tigr.org) and the
University of Oklahoma's Advanced Center for Genome Technology
(http://www.genome.ou.edu/staph.html) and used to amplify a 787-bp
contiguous region from S. aureus RN6390 by PCR. The PCR
product was ligated into pCR2.1 (Invitrogen, Carlsbad, Calif.) and
transformed into E. coli INV
F', and transformants were
selected as recommended by the manufacturer (Invitrogen). Plasmid DNA
from antibiotic-resistant transformants was isolated using a plasmid
miniprep kit (Bio-Rad Laboratories, Richmond Calif.) and digested with
EcoRI to verify the presence of an approximately 800-bp
insert. Plasmid DNA containing the desired fragment
(pCR2.1sodM) was sequenced at the University of Arkansas for
Medical Sciences DNA Sequencing Core Facility (Little Rock, Ark.) using
a DNA sequencer (Perkin-Elmer Biosystems, Foster City, Calif.).
(ii) Complementation of an E. coli sodA sodB
mutant.
The E. coli strain QC779 (sodA sodB)
was transformed with the pCR2.1sodM construct by
electroporation, as recommended by the manufacturer (Bio-Rad
Laboratories), and selected on M63 agar plates containing antibiotic.
Plates were incubated at 37°C for 2 to 3 days before colonies were
visible. In addition, E. coli QC779 was transformed with
pBA23sodC (pUC9 containing the sodC gene from
Brucella abortus) and selected on LB agar plates containing antibiotic. Plasmid DNA from several antibiotic-resistant transformants was isolated to verify the presence of either pCR2.1sodM or
pBA23sodC, and transformants containing the appropriate
plasmid were procured for further study.
Construction of sod mutations in S. aureus.
The erythromycin resistance marker (erm)
of plasmid pDG647 (14) (kindly provided by Ken Bayles,
University of Idaho, Moscow, Idaho) was isolated as a 1.6-kbp
BamHI fragment and gel purified. The 5' overhangs of the
fragment were filled in using the Klenow fragment of DNA polymerase
(Promega Corp., Madison, Wis.) and subcloned into the single
SnaBI site located approximately in the middle of the
sodM gene in pCR2.1sodM. The resulting construct, pCR2.1sodM::erm, was verified by restriction
analysis. The sodM::erm cassette, residing on
the 2.4-kbp EcoRI fragment of
pCR2.1sodM::erm, was gel purified and ligated
into the temperature-sensitive shuttle vector, pCL10 (34)
(kindly provided by Chia Lee, University of Kansas Medical Center,
Kansas City, Kans.). The resulting construct, pCL10sodM::erm, was transformed into S. aureus RN4220 by electroporation as described by Kraemer and
Iandolo (23), and erythromycin-resistant transformants
were selected at 30°C. A single plasmid-containing colony was chosen
and grown overnight at 30°C in TSB containing erythromycin. Portions
of the overnight culture were diluted 1,000-fold and plated as 0.1-ml
aliquots onto TSA plates containing erythromycin. Plates were incubated
for 36 h at 43°C, which is nonpermissive for plasmid
replication. Erythromycin-resistant colonies growing at 43°C were
analyzed for loss of SOD activity as described in the next section. The
sodM::erm mutation in S. aureus
RN4220 was moved into S. aureus RN6390 by
11-mediated
transduction (29), and the erythromycin-resistant
transductants were analyzed for loss of SOD activity. Southern analysis
using the sodM PCR product as the probe was performed to
verify the disruption of sodM. The sodA mutant
was generated in a similar manner except that the tetracycline
resistance marker from pDG1515 (14) (kindly provided by
Ken Bayles, University of Idaho) was inserted as a blunt-ended, 2.1-kbp
EcoRI fragment into the SnaBI site of
sodA. The sodA::tet mutation
generated in S. aureus RN4220 was transduced into S. aureus RN6390 and S. aureus RN6390 containing the
sodM::erm mutation. Southern analysis and SOD
activity gels were used to confirm the mutations.
The PCR product containing the
sodM gene was also subcloned
into the expression shuttle vector pCL15 (kindly provided by Chia
Lee
at the University of Kansas Medical Center), which contains
an
inducible
lac promoter. The pCL15
sodM construct
was transformed
into RN4220 and subsequently moved into the
S. aureus RN6390 double
(
sodM sodA) mutant by transduction
(
29). A chloramphenicol-resistant
transductant was
inoculated into TSB containing chloramphenicol
and grown under
high-aeration growth conditions. Expression of
sodM was
induced with IPTG (isopropyl-

-
D-thiogalactopyranoside,
0.5 mM; Fisher Scientific, Fairlawn, N.J.) 1 h postinoculation,
and cells were harvested 5 h later. Whole-cell lysates were
assessed
for SOD activity as described below. In addition, viability of
the pCL15
sodM-containing transformants was determined in the
presence
of methyl viologen (MV; Sigma). Sampling and determination of
viability were performed as described
below.
Preparation of cell lysates and SOD activity assay.
Whole-cell lysates from strains of S. aureus and E. coli were prepared using the procedure of Blevins et al.
(3). Briefly, cells from broth cultures of either S. aureus or E. coli were harvested by centrifugation
(12,000 × g for 10 min at 4°C), washed with an equal
volume of TEG buffer (25 mM Tris, 25 mM EGTA [pH 8.0]), and suspended
in 0.4 ml of TEG buffer. The cell suspensions were pipetted into 2.0-ml
Fast Prep Blue tubes (Bio 101, Vista, Calif.) containing acid-washed,
RNase-free 0.1-mm silica beads. The tubes were placed into a high-speed
reciprocator (Bio 101) and agitated at 6 m/s for 40 s. The tubes
were cooled on ice for 15 min, and the lysates were cleared by
centrifugation (16,170 × g, for 10 min at 4°C). The
supernatant was recovered as 0.2-ml portions and stored at
20°C
until needed. Total protein of whole-cell lysates was determined using
the Bradford assay (Bio-Rad Laboratories).
Equal amounts of cell protein (5 µg) were loaded onto 15% (wt/vol)
nondenaturing polyacrylamide gels and separated by electrophoresis
in
buffer lacking sodium dodecyl sulfate (
25). SOD activity
was determined using the nitroblue tetrazolium negative staining
method
of Beauchamp and Fridovich (
2). To determine the
sensitivity
of SOD to either hydrogen peroxide
(H
2O
2) or potassium cyanide
(KCN), gels were
exposed to 5 mM H
2O
2 (Sigma) for 30 min, washed
twice in deionized, glass-distilled H
2O, and stained for
SOD activity
as described by Clare et al. (
6). Sensitivity
to KCN (Sigma)
was determined by exposing gels to 10 mM KCN for 15 min
prior
to negative staining for SOD activity (
26).
SOD activity of resolved bands was quantified by densitometry using the
AlphaImager 2000 (Alpha Innotech Corp., San Leandro,
Calif.) imaging
system. Final values were calculated from the
linear region of a
standard curve of activity as a function of
protein.
RNA isolation and Northern analysis.
Total RNA was isolated
from S. aureus as described by Hart et al.
(17). RNA (A260/A280 = 1.9 to 2.0) was diluted in diethylpyrocarbonate (Sigma)-treated
water to a final concentration of 1 µg/ml and verified by comparing
the intensities of the rRNA bands. RNAs, serially diluted twofold, were
denatured in the presence of glyoxal (Eastman Kodak Co., Rochester,
N.Y.) and dimethyl sulfoxide (Fisher Scientific) at 50°C for 1 h, electrophoresed through a 1.4% GTG agarose gel (BioWhittaker
Molecular Applications, Rockland, Maine), and transferred by passive
diffusion onto neutral nylon (MagnaGraph; Micron Separations, Inc.,
Westborough, Mass.). Membranes were hybridized overnight (18 to 24 h) at 65°C with DNA probes specific for the cloned sodM
gene and 16S rRNA (37). Probes were randomly labeled with
digoxigenin-11-UTP (Roche Molecular Biochemicals, Indianapolis, Ind.)
and the Klenow fragment of DNA polymerase (Promega). Hybridized probes
were detected by autoradiography with alkaline phosphatase-conjugated
anti-digoxygenin F(ab')2 antibody fragments (Roche
Molecular Biochemicals) and the chemiluminescent substrate
CDP-Star (Roche Molecular Biochemicals).
MV treatment.
The S. aureus parent and the
sod mutant strains were tested for susceptibility to the
internal oxygen radical generator MV. Overnight (15 to 18 h)
cultures were used to inoculate 500-ml flasks containing 20 ml of TSB
to an initial optical density of approximately 0.05 at 550 nm.
Cultures were incubated at 37°C with rotary aeration (225 rpm),
and growth was monitored spectrophotometrically until cells
reached early exponential phase (1.5 h, optical density at 550 nm
of ca. 0.2). Freshly prepared MV was added to a final concentration of
10 mM at 1.5 h and at times in growth that corresponded to
late exponential (6 h) and postexponential (12 h) phases of growth.
Growth was assessed spectrophotometrically, and cell viability was
determined by taking aliquots at various times points, diluting and
plating on TSA. Plates were incubated overnight at 37°C before colonies were counted. Cell viability values are geometric means (×/
standard errors) of two to five independent
determinations. Statistical significance was determined by analysis of
variance followed by Fisher protected least significant difference
multigroup comparison using StatView (SAS Institute Inc., Cary, N.C.)
with a P value of
0.05.
Nucleotide sequence accession number.
The sodM
nucleotide sequence has been assigned the accession number AF273269 by GenBank.
 |
RESULTS AND DISCUSSION |
Identification and isolation of the S. aureus sodM
gene.
The incomplete sequence of the sod gene reported
by Poyart et al. (33) was used to perform a BLAST search
of the genomic DNA databases for S. aureus COL (The
Institute for Genomic Research) and 8325 (University of Oklahoma
Advanced Center for Genome Technology). The search revealed a match
within both databases which included putative Shine-Dalgarno and
promoter sequences and an open reading frame containing 187 codons,
predicting a protein of 21.5 kDa (data not shown).
Oligonucleotide primers were designed using sequence from
the S. aureus COL database, and a region encompassing the
open reading frame and its upstream region was amplified from S. aureus RN6390 by PCR. The product was cloned into pCR2.1 and verified by restriction analysis and nucleic acid sequencing. The
relatedness of the deduced amino acid sequence of the gene ranged from
45% identity to the Fe-SOD of Legionella pneumophila to
64% identity to the Mn-SOD of Bacillus subtilis (Fig.
1), and 75% identity to the
S. aureus SodA protein reported by Clements et al.
(7). In addition, the amino acid alignment also identified key amino acids used to differentiate between Mn- and Fe-SODs (31). Nineteen of the 21 potential amino acid
discriminators were consistent with Mn-SOD types (Fig. 1). The glycines
at positions 76 and 77, the phenylalanine at position 84, and the
glutamine and aspartate at positions 146 and 147, respectively, were
particularly important in predicting a Mn-SOD due to their conservation
among SODs that utilize Mn as a cofactor (Fig. 1).

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FIG. 1.
Amino acid sequence alignments of bacterial SODs. The
SodM (AF273269) and SodA (7) (AF121672) proteins of
S. aureus and the SOD proteins from Bacillus
subtilis (Bs-MnSOD, D86856), Listeria monocytogenes
(Lm-MnSOD, M80526), E. coli (Ec-MnSOD, AE000465; Ec-FeSOD,
AE000261), Pseudomonas putida (Pp-FeSOD, U64798), and
Legionella pneumophila (Lp-FeSOD, D12922) are shown.
Discriminating amino acids (31) used to differentiate
between Mn- and Fe-SODs are in bold. The underlined region represents
the partial SodM amino acid sequence identified by Poyart et al.
(33).
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S. aureus sodM rescues SOD deficiency in E. coli.
E. coli QC779 (sodA sodB) is
unable to grow on minimal medium under aerobic conditions due in part
to the superoxide-sensitive dehydratases needed for branched-chain
amino acid synthesis (4, 24). The E. coli sodA
sodB mutant was transformed by electroporation with either pCR2.1
or pCR2.1sodM and plated on minimal medium (M63 agar)
containing carbenicillin. Plates were incubated at 37°C for 2 to 3 days before colonies transformed with pCR2.1sodM appeared.
No transformants were recovered when the E. coli sodA sodB
mutant was transformed with pCR2.1. SOD activity gels of whole-cell
lysates from one of the transformants grown in LB broth revealed a
single band of activity (Fig. 2, lane 1),
which migrated between the upper and middle bands of activity from
S. aureus RN6390 (Fig. 2, lane 5). No activity was observed
with either the E. coli double sod mutant or the
E. coli double sod mutant containing pCR2.1 under
identical conditions (Fig. 2, lanes 2 and 3, respectively). At present,
it is unknown why the recombinant SOD (Fig. 2, lane 1) does not migrate
to the same location as the upper band of activity observed with
S. aureus RN6390 (Fig. 2, lane 5).

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FIG. 2.
Activity gel analysis of E. coli
(Ec) and S. aureus SODs. Lane 1, E. coli (sodA sodB) containing pCR2.1sodM; lane
2, E. coli (sodA sodB); lane 3, E. coli (sodA sodB) containing pCR2.1; lane 4, E. coli MG1655; and lane 5, S. aureus RN6390. Stained gels
were scanned using the AlphaImager 2000 (Alpha Innotech Corp.) imaging
system, and the inverse image was generated using NIH Image software.
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In wild-type
E. coli, three bands of activity can be
detected under aerobic conditions (
9). The uppermost band
of SOD activity
represents the Mn-SOD, the lowermost band represents
the Fe-SOD,
and the middle band of activity represents a hybrid protein
consisting
of subunits of the Mn- and Fe-SOD (
6,
9). The
E. coli wild-type
strain (MG1655) exhibited the expected
three bands of activity
(Fig.
2, lane
4).
SodM insensitivity to H2O2 and KCN.
Inactivation by H2O2 and KCN has been used to
predict the metal cofactor requirement of SODs (1, 8, 26).
Given that the amino acid sequences of the staphylococcal
sodM and sodA (7) genes indicate
that these SODs are of the Mn variety, we examined the relative
sensitivity of the staphylococcal SODs to H2O2
and KCN. As Fe-containing SODs are inactivated by
H2O2 (1), polyacrylamide gels were
treated with 5 mM H2O2 for 15 min prior to
negative staining for SOD activity. All three SOD activities of
S. aureus were relatively resistant to
H2O2 (Fig. 3A and
B, compare lanes 1) while the
Fe-containing SOD activity of the wild-type E. coli strain
was reduced considerably (Fig. 3A and B, compare lanes 2), suggesting
that the three SOD activities of S. aureus do not utilize Fe
as a cofactor. This is in contrast to the findings of Clements et al.
(7), who reported that the uppermost band of activity is
sensitive to H2O2. Currently, these differences are unexplained. Clements et al. (7) showed that metal
depletion of cell lysates abolished all three bands of SOD activity and that only the lower two bands of activity were restored when Mn was
added back to the cell lysate. Likewise, Fe did not restore the upper
band of activity. These data suggest that the SodM protein may utilize
some cofactor other than Mn (7).

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FIG. 3.
SOD sensitivity to hydrogen peroxide and potassium
cyanide. Whole-cell lysates prepared from S. aureus RN6390
(lane 1), E. coli MG1655 (lane 2), and E. coli
(sodA sodB) containing plasmid pBA23sodC (lane 3)
were resolved by nondenaturing polyacrylamide gel electrophoresis and
treated with either hydrogen peroxide (B) or potassium cyanide (C)
prior to negative staining for SOD activity. (A) Untreated control. The
gel was analyzed and the image generated as described for Fig. 2.
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Potassium cyanide inactivates SODs containing Cu-Zn metal cofactors
(
8,
26). Treatment of gels containing whole-cell
lysates
from
S. aureus with 10 mM KCN resulted in no loss of
activity
from any of the three bands of SOD activity (Fig.
3A and C,
compare
lanes 1), while the
B. abortus Cu-Zn-SOD, expressed
by a recombinant
plasmid in the
E. coli double
sod mutant, was inactivated (Fig.
3A and C, compare lanes
3).
These data taken collectively indicate that the SODs encoded by
sodM and
sodA are most likely of the Mn type.
However, sensitivity
to H
2O
2 and amino acid
sequence similarity have been misleading
in the characterization of
certain SODs. For example, the SOD
from the anaerobic archaebacterium
Methanobacterium thermoautotrophicum is a Fe-containing
enzyme, although its amino acid sequence and
resistance to
H
2O
2 suggest that it is of the Mn variety
(
38,
39). Conclusive evidence of the specific metal
cofactor of the
staphylococcal SODs will require protein purification
and some
means of ion
detection.
SOD activity and sodM expression under low- and
high-aeration conditions.
In order to determine when expression of
sodM and the production of SOD occur in S. aureus, whole-cell lysates and total RNA were isolated from
S. aureus RN6390 following 3, 6, and 12 h of growth
under low- and high-aeration conditions (Fig.
4). Optical density readings indicate
that while growth rate under low- and high-aeration conditions appears
to be the same, growth under low-aeration conditions results in lower
overall yield (Fig. 4A). Northern analysis using a DNA probe specific
for sodM detected a single RNA species of 0.7 kb,
approximately the size of the transcript predicted from the nucleic
acid sequence of the sodM gene, indicating that
sodM is transcribed monocistronically. Message levels for
sodM under low-aeration growth conditions were most abundant
at the 3-h time point, which corresponded to the transitional period
prior to the postexponential phase of growth (Fig. 4B). After 6 and
12 h of growth, times that corresponded to the early and late
stationary phases, message levels were reduced approximately two- and
fourfold with respect to the 3-h time point (Fig. 4B). In contrast,
under high-aeration growth conditions, message levels were observed to
increase throughout this time course. Levels at 6 (late exponential
phase) and 12 (stationary phase) h of growth were two- and fourfold
elevated with respect to the levels at the 3-h time point (Fig. 4B).

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FIG. 4.
Growth-phase-dependent SOD activity and sodM
expression under conditions of low and high aeration. (A)
Representative growth curve of S. aureus RN6390 grown under
conditions of low ( ) and high ( ) aeration. Whole-cell lysates and
total RNA were isolated under low- and high-aeration conditions at 3, 6, and 12 h of growth. (B) Northern analysis of total RNA
hybridized with a sodM-specific probe. RNA concentrations
were standardized according to A260 values and
loaded as either undiluted (U) or twofold serially diluted (numerical
values) samples. (C) Nondenaturing polyacrylamide gel of whole-cell
lysates stained for SOD activity. The gel was analyzed and the image
was generated as described for Fig. 2. (D) Activity of SodM ( ), the
hybrid ( ), and SodA ( ) under low (left)- and high
(right)-aeration conditions. Percentages were determined from values
generated by quantitative densitometric analysis as described in
Materials and Methods.
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Whole-cell lysates from
S. aureus RN6390 at 3, 6, and
12 h of low- and high-aeration growth were separated by
electrophoresis
on nondenaturing polyacrylamide gels and stained for
SOD activity
(Fig.
4C). Under low aeration, all three bands of activity
were
most abundant at 6 h of growth but decreased approximately
50%
by 12 h (Fig.
4C). In contrast, under high-aeration
conditions,
all three bands of activity increased by 6 h of growth
and remained
high during the stationary phase of growth (12 h) (Fig.
4C).
The relative contribution of each SOD to the overall SOD activity was
assessed by quantitatively comparing each band of activity
by
densitometry and determining the percentage of each with respect
to
total SOD activity (Fig.
4D). These data indicate that while
SodA is
the most abundant of the three SOD activities, the increase
in total
activity as cells entered the late exponential and postexponential
phases of growth under high-aeration conditions appears to be
due to an
increase in SodM activity (Fig.
4C and
D).
Data obtained from our study agree qualitatively with results obtained
by Clements et al. (
7). Using the pyrogallol
spectrophotometric
assay for total SOD activity (
28),
Clements et al. (
7) determined
that total SOD activity
under low- and high-aeration conditions
increased 10- and 18-fold,
respectively, as cells entered the
postexponential phase of growth. In
addition, Clements et al.
(
7) also noted that total
activity during the stationary phase
of growth decreased under
low-aeration conditions and remained
the same under high-aeration
conditions.
SOD activity in S. aureus sod mutants.
To verify
the loss of SOD activity in each of the mutants, whole-cell lysates
from S. aureus RN6390 and its isogenic sod
mutant strains were electrophoresed on nondenaturing polyacrylamide
gels and stained for SOD activity (Fig.
5). As expected, the parental strain
RN6390 exhibited three closely migrating bands of activity (Fig. 5,
lane 1) while the sodM mutant strain exhibited only a single
band of activity that corresponded to the lowest-migrating band
exhibited by the parent (Fig. 5, lane 2). As previously demonstrated by
Clements et al. (7), who used a sodA transposon
mutant, whole-cell lysates from our sodA::tet
mutant contained only a single band of activity that corresponded to
the upper most band exhibited by the parent strain (Fig. 5, lane 3). No
bands of SOD activity were detected in cell lysates prepared from the
sod double mutant (Fig. 5, lane 4). However, when the
sodM gene was expressed from plasmid pCL15 in the
sod double mutant, the uppermost band of activity was
restored (Fig. 5, lanes 5 and 6). Maximal activity was observed when
sodM was induced from the lac promoter with IPTG
(Fig. 5, lane 5). It is not clear at present why the sodM gene is poorly expressed from its own putative promoter in a
moderate-copy-number plasmid (Chia Lee, personal communication).
Sequence analysis of the sodM gene revealed a putative
promoter region and Northern analysis clearly demonstrates that the
sodM message is approximately the size of the transcript
predicted from this nucleic acid sequence. In addition, no other
hybridizing bands were observed by Northern analysis (data not shown).
Furthermore, sequence analysis a thousand base pairs upstream of the
sodM open reading frame revealed no obvious sequences that
might suggest a cis-acting element. Currently, experiments
are under way to determine the precise transcriptional start site of
sodM and whether expression involves additional cis-acting elements upstream of sodM.

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|
FIG. 5.
SOD activities from S. aureus sod mutants.
Lane 1, RN6390; lane 2, sodM mutant; lane 3, sodA
mutant; lane 4, double (sodM sodA) mutant; lane 5, double
mutant containing pCL15sodM induced with IPTG; lane 6, double mutant containing pCL15sodM uninduced.
|
|
These data demonstrate that the three bands of SOD activity observed
for
S. aureus RN6390 are encoded by two distinct genes,
sodM and
sodA. Because the middle band of
activity observed for
the parent strain is lost in either the
sodM or
sodA mutant, the
middle band of activity
is proposed to result from the formation
of a hybrid protein composed
of SodM and SodA. The SOD activity
profile exhibited by
S. aureus is similar to the pattern of SODs
in
E. coli
where subunits of the Mn- and Fe-SOD form a hybrid
band of activity
that migrates between the Mn- and Fe-SOD (
6,
9) (Fig.
2,
lane 4). Even though Clare et al. (
6) concluded
that the
formation of a hybrid SOD in
E. coli is most likely due
to subunit exchange between two enzymes with comparable catalytic
activities and extensive amino acid sequence homology, a functional
role for the hybrid SOD in
E. coli has not been
investigated.
Likewise, whether the hybrid SOD band observed in
S. aureus possesses
a particular function in the physiology
of the bacterium remains
to be
determined.
To the best of our knowledge,
S. aureus represents the first
gram-positive bacterium reported to contain two or more bands
of SOD
activity. The gram-positive bacteria studied thus far demonstrate
a
single band of SOD activity as determined by nondenaturing
polyacrylamide
electrophoresis and staining for SOD activity
(
40). In addition,
several of these SODs are said to be
cambialistic, capable of
utilizing either Mn or Fe as the metal
cofactor (
40). Why
S. aureus possesses two
sod genes that account for three bands of
activity is an
intriguing question, particularly when one considers
that whole-cell
lysates from several coagulase-negative staphylococci,
including
Staphylococcus epidermidis, exhibit only one band of
SOD
activity, with an electrophoretic mobility identical to that
of the
S. aureus SodA (M. W. Valderas and M. E. Hart,
unpublished
data). Perhaps, these differences in SOD profiles between
S. aureus and the coagulase-negative staphylococci represent
an important
divergence in the evolution of these species relevant to
the environmental
niches that these species primarily
occupy.
Viability in the presence of MV.
To assess the contribution of
each of the SODs to resistance against an internal source of oxidative
stress, MV was added to high-aeration broth cultures of S. aureus at 1.5, 6, and 12 h of growth, times that corresponded
to early exponential, late exponential, and stationary phases of
growth. Growth was monitored spectrophotometrically, and viability in
the presence and absence of MV was determined at various times during
growth (Fig. 6). Only the sod
double mutant was affected when grown in the absence of MV, exhibiting
a statistically significant reduction (P < 0.001) in
the total number of cells compared to the parent strain and to the
sodM and sodA single mutants (Fig. 6). When MV
was added to early-exponential-phase growing cultures (1.5 h), cell
viability of all cultures was reduced at 6 h to levels just below
the cell concentration at zero hour (Fig. 6A). However, only the
sodA mutant and the sod double mutant continued
to lose viability over the next 6 to 12 h. An approximately
104-fold reduction in viability was observed for these
mutants (Fig. 6A). While growth of the parent and sodM
mutant was reduced approximately 10-fold by 6 h, no additional loss of
viability was observed and cell number began to increase by 18 h (Fig.
6A). Interestingly, an increase in viability was also observed for the
sodA mutant and the sod double mutant at the
later time points. Whether these cells are the result of suppressor
mutations is currently under investigation.

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|
FIG. 6.
Viable cell count of S. aureus RN6390 ( ,
), the sodM mutant ( , ), the sodA mutant
( , ), and the double (sodM sodA) mutant ( , )
grown in the absence (open symbols) and presence (closed symbols) of
MV. MV was added at 1.5 (A), 6 (B), and 12 (C) h of growth. Values are
means ×/ standard errors.
|
|
When MV was added to cells late in the exponential (6 h) or stationary
(12 h) phases of growth, the viability of the parent
and
sodM mutant was unaffected (Fig.
6B and C). Surprisingly,
the
sodA mutant was unaffected (Fig.
6B and C). In fact,
both
the
sodM and
sodA mutants and the parent
strain exhibited identical
viability in the presence or absence of MV.
In contrast, when
MV was added to the
sod double mutant at 6 or 12 h of growth,
a significant reduction (10
5-fold)
in viable cells was observed (Fig.
6B and C). These data
indicate that
SodA levels alone are sufficient during early growth
to protect against
oxidative stress (1.5 h) (Fig.
4C and D). In
contrast, maximum
expression of SodM is delayed until cells reach
the late exponential to
postexponential phases of growth (6 h)
(Fig.
4C). Consequently, the
sodA mutant is sensitive to oxidative
stress caused by MV
addition at 1.5 h of growth, and its viability
is significantly
reduced (Fig.
6A). However, MV is not inhibiting
when added after SodM
has been produced in the cell (6 or 12 h),
and the viability of
the
sodA mutant is unaffected due to the
compensatory levels
of SodM (Fig.
6B and C). These results indicate
that while SodA may be
the major SOD activity in the exponential
growth phase of
S. aureus, SodM may play an important role in
maintaining cell
viability during the stationary phase of growth.
To verify that SodM
can function in this capacity, the
sod double
mutant
containing pCL15
sodM was grown in the presence of MV (Fig.
7). Cultures in the early exponential
phase of growth (1 h) were
induced to express
sodM by the
addition of IPTG. When cultures
reached the late exponential phase of
growth (6 h), MV was added.
As previously demonstrated, MV added to
either the parent or the
sodA mutant strain at 6 h of
growth had no effect on their viability
(Fig.
7). However, when MV was
added to the
sod double mutant,
a drastic reduction
(10
4-fold) in viability was observed by 12 h. In
contrast, the
sod double mutant containing the
pCL15
sodM construct was unaffected
by the addition of MV at
6 h. Growth of this strain was identical
to that of the parent and
sodA mutant strains (Fig.
7).

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|
FIG. 7.
Viable cell count of S. aureus RN6390 ( ,
), the sodA mutant ( , ), the double mutant ( ,
), and the double mutant containing pCL15sodM ( , )
grown in the absence (open symbols) and presence (closed symbols) of
MV. Values are means ×/ standard errors.
|
|
In summary, results from this study clearly demonstrate that
S. aureus possesses three bands of SOD activity accounted for
by two
genes,
sodM and
sodA. The third band of activity
is most
likely a hybrid SOD consisting of subunits of SodM and SodA.
While
this study has shown that SodM levels in the late exponential
to
postexponential phases of growth can protect an
S. aureus
sodA mutant from oxidative stress, it does not seem likely that
S. aureus would employ a two-SOD system to protect cells in
the event
that one of the SODs became nonfunctional. The fact that
viability
of the
sodM mutant is not adversely affected even
in the presence
of MV suggests an alternative role for this SOD.
Perhaps the differences
in SodM and SodA activities observed in this
study using in vitro
growth conditions suggest a more important role
for one or both
of these SODs in the host, particularly after
phagocytosis by
neutrophils. Studies addressing this question are
currently in
progress. In addition, studies that include the definitive
determination
of the metal cofactors used by both SODs and the
environmental
stimuli that control the expression of these genes should
also
provide helpful insight in determining the significance of each
SOD in
S. aureus.
 |
ACKNOWLEDGMENTS |
This work was supported by Public Health Service grant AI-36934
from the National Institute of Allergy and Infectious Diseases and a
Faculty Research Grant from the University of North Texas Health
Science Center.
We are indebted to Tony Romeo (UNTHSC) and Jerry Simecka (UNTHSC) for
helpful discussions, critical reading of the manuscript, and continuous
encouragement throughout this work. We are also indebted to Ken Bayles,
John Iandolo, Chia Lee, Marty Roop, and Danièle Touati for
strains, plasmids, and helpful discussions. A special thanks goes to
Allen Gies of the University of Arkansas for Medical Sciences DNA
Sequencing Core Facility for sequencing the sodM clones.
Preliminary sequence data were obtained from The Institute for Genomic
Research and the University of Oklahoma's Advanced Center for Genome Technology.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Department of
Molecular Biology and Immunology, University of North Texas Health
Science Center at Fort Worth, 3500 Camp Bowie Blvd., Fort Worth, TX
76107-2699. Phone: (817) 735-2110. Fax: (817) 735-2118. E-mail:
mhart{at}hsc.unt.edu.
 |
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Journal of Bacteriology, June 2001, p. 3399-3407, Vol. 183, No. 11
0021-9193/01/$04.00+0 DOI: 10.1128/JB.183.11.3399-3407.2001
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