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Journal of Bacteriology, July 2001, p. 3974-3981, Vol. 183, No. 13
0021-9193/01/$04.00+0 DOI: 10.1128/JB.183.13.3974-3981.2001
Copyright © 2001, American Society for Microbiology. All rights reserved.
NadN and e (P4) Are Essential for Utilization of NAD
and Nicotinamide Mononucleotide but Not Nicotinamide Riboside
in Haemophilus influenzae
Gabriele
Kemmer,1
Thomas J.
Reilly,2
Joachim
Schmidt-Brauns,1
Gary W.
Zlotnik,3
Bruce A.
Green,3
Michael J.
Fiske,3
Mark
Herbert,4
Anita
Kraiß,1
Stefan
Schlör,1
Arnold
Smith,2 and
Joachim
Reidl1,*
Zentrum für Infektionsforschung,
Universität Würzburg, 97070 Würzburg,
Germany1; University of Missouri,
Columbia, Missouri2; Wyeth-Lederle
Vaccines, West Henrietta, New York 14586-97283;
and Department of Paediatrics, John Radcliffe Hospital,
Headington, Oxford OX3 9DU, United Kingdom4
Received 22 January 2001/Accepted 12 April 2001
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ABSTRACT |
Haemophilus influenzae has an absolute requirement for
NAD (factor V) because it lacks almost all the biosynthetic enzymes necessary for the de novo synthesis of that cofactor. Factor V can be
provided as either nicotinamide adenosine dinucleotide (NAD),
nicotinamide mononucleotide (NMN), or nicotinamide riboside (NR) in
vitro, but little is known about the source or the mechanism of uptake
of these substrates in vivo. As shown by us earlier, at least two gene
products are involved in the uptake of NAD, the outer membrane
lipoprotein e (P4), which has phosphatase activity and is
encoded by hel, and a periplasmic NAD nucleotidase, encoded by nadN. It has also been observed that the latter gene
product is essential for H. influenzae growth on media
supplemented with NAD. In this report, we describe the functions and
substrates of these two proteins as they act together in an NAD
utilization pathway. Data are provided which indicate that NadN harbors
not only NAD pyrophosphatase but also NMN 5'-nucleotidase activity. The
e (P4) protein is also shown to have NMN 5'-nucleotidase
activity, recognizing NMN as a substrate and releasing NR as its
product. Insertion mutants of nadN or deletion and
site-directed mutants of hel had attenuated growth and a
reduced uptake phenotype when NMN served as substrate. A
hel and nadN double mutant was only able to
grow in the presence of NR, whereas no uptake of NMN was observed.
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INTRODUCTION |
Haemophilus influenzae, a
gram-negative facultative anaerobic bacterium, is responsible for
significant morbidity and mortality in young children (9,
35). In order to cultivate H. influenzae, complex medium is required, and if it is not blood based, it must contain two growth factors: nicotinamide adenine dinucleotide (NAD) and
hemin (6). Early biochemical investigations
established that nicotinamide mononucleotide (NMN) and
nicotinamide riboside (NR) can substitute for NAD, whereas
nicotinamide, niacin, or other nicotine-based intermediates of the
Preiss-Handler pathway cannot (10, 20, 31). The NAD
dependency of H. influenzae was confirmed by the absence of
the genes encoding the enzymes necessary for the de novo biosynthesis
of NAD (8). Accumulation of nicotinamide nucleotides
derived from NAD or NR has been demonstrated in H. influenzae and Haemophilus parainfluenzae (4,
11). For H. parainfluenzae the
Km for transport is about 0.55 µM for NAD and
0.14 µM for NR, while the Vmax for NR is about
four times that of NAD (4). This implies that NR is the
substrate for an as-yet-unidentified inner membrane transporter, a
proposal that is supported by the observation that NAD cannot be taken up into the cytosolic compartment as an intact molecule. Limited NAD
salvage capacity resides within the H. influenzae cytosol, which can be demonstrated if cell extracts are incubated with NR or
NMN, indicating the presence of an NMN adenylyl transferase or an NAD
pyrophosphorylase activity (5, 16).
In other bacteria, NAD is degraded into NMN or NR prior to uptake. In
Salmonella enterica serovar Typhimurium, an inner
membrane-associated NAD pyrophosphatase is present with its activity
expressed in the periplasm (7). The encoding gene is
pnuE (22), and PnuE is needed to utilize NAD
and to produce NMN. NMN is transported across the cytoplasmic membrane
via two independent routes. One system resembles that of an active
transport, consisting of two gene products encoded by pnuC
and nadR. PnuC was characterized as an integral membrane
protein essential for transport (37), and NadR was
characterized in several ways. It is a repressor protein involved in
feedback regulation coupled with de novo biosynthesis of NAD (14,
24), and it participates in NAD uptake mechanisms acting on PnuC
(37), but it is nonessential (38). Recently, it was shown that in Escherichia coli NadR itself has NAD
pyrophosphorylase activity (25). In addition, a second NAD
transport route exists, in which a membrane-bound NMN glycohydrolase,
presumably an inner membrane protein facing the periplasm, effects the
release of nicotinamide, which is then assumed to diffuse across the
inner membrane (for a review, see reference 23).
Recently, our investigators presented data showing that two gene
products appear to be involved in the NAD utilization pathway of
H. influenzae (26). The genes were identified
as the hel-encoding outer membrane lipoprotein e
(P4) and a periplasm-encoded gene product termed NadN. Knockout
mutations of both genes resulted in growth-deficient phenotypes which
were dependent on the NAD concentrations provided in the growth medium.
The enzymatic activities of both proteins were partially characterized.
It was shown by Reidl, Reilly, and colleagues (26-28)
that e (P4) is an acid phosphatase, while NadN-enriched
protein fractions have NAD pyrophosphatase activity. NadN is thought to
be identical to a 64-kDa periplasmic NAD pyrophosphatase described
earlier (16). In nontypeable H. influenzae
(NTHi), nadN was also identified but was named
nucA. The protein product of nucA possessed a
5'-nucleotidase activity that acted on 5'-phosphorylated nucleosides,
e.g., adenosine monophosphate (AMP) (36). Green and
coworkers showed that e (P4) and NadN proteins are
antigenically highly conserved among both typeable H. influenzae and NTHi isolates (12, 13, 36), perhaps
indicating the physiological importance of these proteins
(36).
In this report, we define the functions of NadN and e (P4)
in the NAD uptake pathway of H. influenzae. We present data
demonstrating that NadN is identical to NucA and that this protein has
the ability to act as an NAD pyrophosphatase as well as an NMN
5'-nucleotidase. Furthermore, we provide data indicating that
e (P4) also acts as an NMN 5'-nucleotidase, and deletion or
point mutants in hel affect the growth of H. influenzae and the uptake of NAD and NMN. Finally, a nadN
hel double mutant was constructed and shown to be unable to
utilize NAD or NMN and only able to survive when NR was provided in the
growth medium.
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MATERIALS AND METHODS |
Bacterial strains, plasmids, and media.
All plasmid
constructs were cloned in E. coli strains XL-1 and LE392
(New England Biolabs, Frankfurt, Germany). Reference strain H. influenzae Rd KW20 was obtained from A. Wright (Tufts University,
Boston, Mass.), and strain R906 (3) was from A. Smith
(University of Missouri, Columbia). These strains were used for the
construction of mutants in hel and nadN (Table
1). H. influenzae was grown at
37°C under aerobic conditions on 3.8% brain heart infusion (BHI)
agar (Difco Laboratories, Detroit, Mich.) supplemented with NAD (15 to
30 µM) and hemin-chloride (20 µg/ml) (Sigma, Deisenhofen, Germany).
H. influenzae mutants REI1010
(nadN::cat), REI1012
(
hel::kan), GK02
(helD86L), and GK03
(helD84A) were grown on BHI agar supplemented
with NMN (30 µM). The double mutant GK04
(nadN::cat
hel::kan) was grown on NR (30 µM).
Antibiotics were used for H. influenzae and E. coli as follows: chloramphenicol (Cm), 2 and 30 µg/ml,
respectively; kanamycin (Kan), 10 and 50 µg/ml; ampicillin (Amp), 6 and 100 µg/ml (Sigma). Plasmids used are listed in Table 1. Plasmids were isolated according to the Qiagen kit protocol (Qiagen, Hilden, Germany).
Construction of H. influenzae mutant strains REI1012
(
hel::kan), GK02
(helD86L), GK03
(helD84A), and GK04
(nadN::cat
hel::kan).
All primers used
for cloning and constructions were synthesized by MWG-Biotech,
Ebersberg, Germany. For construction of strain REI1012, a chromosomal
DNA fragment encoding hel (HI0693) along with adjacent gene
sequences was generated by PCR from strain Rd chromosomal DNA with
primers hel-5' and helEcoRV-3' (Table 2).
PCR amplification was carried out with the Thermoprime PCR kit
(Advanced Biotechnologies, Hamburg, Germany), using the protocol of
Mullis and Faloona (21). Primer helEcoRV-3' contained an EcoRV site for further subcloning. After PCR amplification,
a 3.1-kbp DNA fragment containing bp 736123 to 739333 of the Rd genome
(8) was purified, digested with EcoRV and
BamHI (a BamHI site is located at bp 736160 on
the chromosome, 37 bp in from the 5' end of the PCR fragment), and
ligated into BamHI- and EcoRV-digested pACYC184
(30). The resulting construct was named pSEhel (Fig. 1A). The hel gene was deleted
in plasmid pSEhel by inverse PCR using primers designed to contain
flanking HpaI sites,
P4HpaI-5' and
P4HpaI-3' (Fig. 1A;
Table 2). The resulting 6.35-kbp amplicon was digested with
HpaI and then religated to obtain plasmid pSE
hel. An
aminoglycoside 3' phosphotransferase gene (kan), derived
from pACYC177 (29), was isolated as a HincII
and StuI fragment and ligated into the HpaI site
of pSE
hel, resulting in plasmid pSE
helkan (Fig. 1A). This plasmid
served as the template for the amplification of the
hel::kan region by PCR with primers
helScaI-5' and a pACYC184-specific primer, BamHI-3' (Table
2). The resulting 3.5-kbp DNA fragment was transformed into H. influenzae Rd according to the method of Tomb et al.
(33). Kanr transformants were selected on BHI
agar containing hemin (20 µg/ml), NMN (30 µM), and kanamycin (10 µg/ml), and the resultant strain was designated REI1012
(
hel::kan). Strain construction was
verified by PCR and Southern (data not shown) and Western blot analyses (Fig. 2B).

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FIG. 1.
Construction of H. influenzae mutants. (A)
REI1012 ( hel::kan); (B) GK02
(helD86L). Restriction enzymes were
XhoI, SwaI, SalI, and KpnI.
DNA crossover constructions are indicated by crossing, encoding
regions are indicated as solid arrows, and genes encoding antibiotic
resistance are indicated as arrows with open arrowheads; for details
see the text.
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FIG. 2.
Western blot analysis of NadN and e (P4) of
H. influenzae Rd. (A) Detection of NadN in periplasmic
extracts. Protein sizes (in kilodaltons) are as indicated. Lane 1, Rd
extract; lane 2, extract of REI1010
(nadN::cat); lane 3, purified NadN. (B)
Detection of e (P4) in OMP extracts. Lane 1, Rd
extract; lane 2, extract of REI1012
( hel::kan); lane 3, extract of REI1012
( hel::kan) complemented with e
(P4) on plasmid pJRP4; lane 4, GK02 (helD86L)
extract; lane 5, GK03 (helD84A) extract; lane 6, purified e (P4). Samples were adjusted to a protein
concentration of 20 µg/ml and subjected to SDS-12% PAGE.
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A D86L point mutation was constructed in hel, resulting in
mutant strain GK02. A purified cat gene, encoding
chloramphenicol acetyltransferase derived from pACYC184 (18,
30), was digested with SnaBI and FspI and
ligated into the SwaI site 7 bp downstream of the
hel stop codon in pSEhel. The resulting plasmid, pGK01, was
digested with EcoRV and SnaBI, releasing a
2.5-kbp DNA fragment encoding the cat gene and 393 bp of the
hel gene. This was transformed into H. influenzae
Rd with Cmr transformants selected on BHI agar containing
hemin (20 µg/ml), NMN (30 µM), and chloramphenicol (2 µg/ml). The
resulting mutant strain (GK01) encoded cat downstream from
the 3' end of hel and in the same orientation (Fig. 1B). Two
PCR products were generated from the hel gene of strain
GK01, each encoding an XhoI restriction site at either the
5' or the 3' end. Normally, no XhoI site can be found within
hel; however, by changing the sequence motif GATGAA at bp 256 to 261 to an XhoI site, CTCGAG,
the aspartate at position 86 is replaced with leucine. The
hel 5' PCR product (1,550 bp) (Fig. 1B), containing the
promoter region and the N terminus of hel with a 3'
XhoI site, was generated with primers helBamHI5' and
P4XhoI3' (Table 2). The hel 3' PCR product (1,800 bp; Fig. 1B) was generated with primers P4XhoI5' and P4cat3' and started at the
5' XhoI site, contained the C terminus of hel,
and ended downstream of the cat cassette (Table 2). Both
hel-5' and hel-3' were digested with
XhoI and ligated, and the ligation product was PCR amplified
with helBamHI5' and P4cat3'. The amplicon was purified and transformed
into REI1012 (Fig. 1B). Cmr transformants were selected on
BHI agar containing hemin (20 µg/ml), NMN (30 µM), and
chloramphenicol (2 µg/ml) and replicated to BHI agar containing
kanamycin (10 µg/ml). Cmr and Kans colonies
were isolated and purified, and the resultant strain, GK02, was
verified by PCR and DNA sequence analysis (data not shown). This D86L
hel point mutation (strain GK02) was characterized by
Western blot analysis (Fig. 2B) and phosphatase assays (see Fig. 4).
A D84A point mutation was differently constructed in hel,
resulting in mutant strain GK03. Wild-type hel cloned into
the EcoRI site of pBluescript and designated phel1
(27) was used as the substrate for PCR mutagenesis.
Site-directed mutations were generated using the QuickChange
site-directed mutagenesis kit (Stratagene, Amsterdam, The Netherlands)
according to the manufacturer's instructions. The primer D84A,
containing the degenerate nucleotide (indicated by underlining, Table
2), and the reverse complement primer were used for PCR amplification
of plasmid phel1. PCR-mutated phel1 was restricted with DpnI
to remove nonmutated phel1, prior to transformation into E. coli DH5
. Transformants selected on Luria-Bertani agar
containing ampicillin were assayed for phosphomonoesterase activity as
described earlier (28). E. coli clones lacking
phosphomonoesterase activity were isolated and mutated phel1 was
recovered (Wizard Plus Miniprep kit; Promega). A 1.3-kb
HincII fragment containing the cat gene was
cloned into a SwaI site 3' to the hel open
reading frame in mutant phel1 plasmids. cat-containing phel1
plasmid, designated phel1cat, was transformed into DH5
and selected
on Luria-Bertani agar containing ampicillin and chloramphenicol. Subsequently, the mutant hel gene associated with
cat was excised from mutant phel1cat with EcoRI
and transformed into H. influenzae strain R906.
Transformants were selected on chocolate agar containing chloramphenicol. Selected transformants were analyzed for
phosphomonoesterase activity and for the presence of e (P4)
by Western blot analysis (data not shown). Subsequent transformation of
chromosomal DNA from strain R906, containing the hel point
mutation (D84A) and cat gene, into strain REI1012
(
hel::kan) resulted in a Kans
Cmr Rd helD84A mutant, GK03. This
strain was also tested for phosphomonoesterase activity (see Fig. 4B)
and the presence of the e (P4) antigen by Western blot
analysis (Fig. 2B).
Plasmid pSE2, containing nadN::cat
(26), was used for the construction of GK04
(nadN::cat
hel::kan) in strain Rd. A 2.8-kbp nadN::cat DNA fragment was PCR amplified with
primers HI0206-L' and HI0206-R' (Table 2) and was transformed into
H. influenzae strain Rd REI1012. Cmr colonies of
strain GK04 were isolated and purified on BHI agar containing hemin (20 µg/ml), NR (30 µM), and chloramphenicol (2 µg/ml). Isolated
clones were verified by PCR and Southern and Western blot analyses
(data not shown).
Nicotinamide nucleotide reagents.
-NAD,
-NMN, and AMP
were obtained from Sigma. NR was prepared by incubating
-NAD with
shrimp alkaline phosphatase in shrimp phosphatase buffer according to
the manufacturer's instructions (Amersham Pharmacia Biotech, Freiburg,
Germany). Carbonyl-[14C]NAD was obtained from Amersham,
and [14C]NMN was prepared from
carbonyl-[14C]NAD by treatment with snake venom
nucleotide pyrophosphatase (Sigma). [14C]NR was prepared
by incubating carbonyl-[14C]NAD, snake venom nucleotide
pyrophosphatase, and alkaline phosphatase in alkaline phosphatase
buffer for 1 h at 37°C. Enzymes were inactivated by adding 5%
trichloroacetic acid, followed by 10-min incubation on ice.
Subsequently, the supernatants were recovered after centrifugation (5 min, 16,000 × g) and neutralized to pH 7 with 6 N NaOH.
Isolation of OMP and periplasmic protein extracts.
Outer
membrane proteins (OMPs) were prepared according to a modified
(26) protocol of Carlone et al. (2). Samples
were kept in HEPES (10 mM) and glycerol (5%) and were stored at
20°C. For the preparation of periplasmic extracts, overnight
cultures (5 ml) of strain Rd or REI1010 were harvested by
centrifugation and washed once with Tris-HCl (50 mM, pH 8.5) at 4°C.
The pellets were resuspended in 200 µl of Tris-HCl (50 mM, pH 8.5)
containing polymyxin B (2 mg/ml) and incubated for 10 min on ice. Cells
were then centrifuged (20,000 × g, 4°C, 10 min) and
the supernatant was recovered. These extracts are referred to as
periplasmic extracts (15).
Purification of recombinant NadN (NucA) and e (P4)
protein.
Recombinant NadN (NucA), originally derived from
nontypeable H. influenzae (NTHi) was purified from E. coli INVF'(pPX691) as previously described (36). The
purified recombinant protein was dialyzed into phosphate-buffered
saline (pH 7.2) and stored frozen at
20°C. The recombinant
e (P4) protein used for this study was isolated as described
earlier (28).
Protein analysis.
Protein concentrations of OMP extracts,
periplasmic extracts, and purified recombinant proteins were determined
according to the method of Bradford (1), using the Bio-Rad
protein assay kit (Bio-Rad, München, Germany). Sodium dodecyl
sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) was performed as
described by Laemmli (19). After SDS-PAGE, proteins were
detected by Western blot analysis, according to the methods of Towbin
et al. (34), with monoclonal antibodies (MAbs) directed
against e (P4) and NadN, respectively, as described earlier
(12, 36).
Characterization and quantification of NAD pyrophoshatase and
5'-nucleotidase activities.
Purified NadN (NucA) (0.12 mg of
protein/ml) was incubated with 0.1 µM specific radioactive labeled
substrate in shrimp alkaline phosphatase buffer for 1.5 h at
37°C. The enzymatic activity of periplasmic extracts was determined
by incubating 1 mg of extract/ml with sample buffer (50 mM
MgCl2, pH 8.5) and 0.01 to 0.1 µM concentrations of
radioactive 14C-labeled substrate for 1.5 h at 37°C.
Reactions were terminated by adding 5% trichloroacetic acid, followed
by 10-min incubation on ice. Subsequently, the supernatants were
recovered after centrifugation (5 min, 10,000 rpm) and NaOH (6 N) was
added to neutralize the samples to pH 7. Aliquots of 2 µl were
subsequently analyzed by thin-layer chromatography (TLC). Purified
e (P4) protein was incubated with [14C]NAD,
[14C]NMN, or [14C]NR (a 0.1 µM
concentration of each) in HEPES buffer (10 mM, pH 6) for 1.5 h at
37°C. OMP extracts were incubated with sample buffer (50 mM
MgCl2, pH 6.0) and [14C]NAD,
[14C]NMN, or [14C]NR (each at a 0.1 µM
concentration) for 1.5 h at 37°C. Samples were then treated as
described for NadN (see above).
Activity of NadN against NMN, NAD, and AMP and of e (P4)
against NMN was determined by measuring the release of inorganic phosphate from these substrates as previously described (27, 36). The NadN Kms for AMP, NAD, and NMN
were determined by using a Lineweaver-Burk double-reciprocal plot based
on individual substrate saturation curves. The e (P4)
Km for NMN was determined by using the
computer-based method of Brooks (1a).
TLC.
Radioactively labeled samples were separated by TLC in
a solvent system consisting of 1 M ammonium acetate (pH 5) and ethanol (70:30) (17) using Cellulose F plates (Merck, Darmstadt,
Germany). After separation, the plates were dried and exposed to
radiation-sensitive film (Eastman Kodak Co., Rochester, N.Y.). Spots
were identified by comparison with reference samples of
[14C]NAD, [14C]NMN, and
[14C]NR.
Uptake studies.
H. influenzae strains from
overnight cultures were inoculated in BHI (3.8%) medium supplemented
with NR (30 µM) and hemin chloride (20 µg/ml) and grown to an
optical density at 490 nm (OD490) of
1. After
centrifugation (4,000 × g, 5 min) the pellets were
resuspended in BHI (3.8%) medium without supplements to an OD490 of
2. Aliquots of 3 ml were incubated on a heating
block to 37°C, and radioactively labeled substrates (1 µM
concentration) were added; 500-µl samples were removed after 1, 3, 5, 7, and 9 min. The samples were filtered through ME 25 filters
(0.45-µm pore size; Schleicher & Schuell, Dassel, Germany) which had
been soaked in 0.1 M NaCl. The filters were washed with 5 ml of NaCl (0.1 M) and placed in vials containing 5 ml of scintillation liquid (Emulsifier-Safe; Packard, Dreieich, Germany). Radioactivity was measured with an SL 6000SC scintillation counter (Beckman,
München, Germany). Results are expressed as the percent total
cellular accumulation of 14C-labeled metabolite, compared
to 100% of the 14C-labeled substrate provided in the
assay. Results (means) are shown together with the standard deviation
from at least three independent experiments.
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RESULTS |
Characterization of enzymatic activities of NadN.
Recently,
two new gene loci have been described in typeable H. influenzae and NTHi, nadN and nucA,
respectively (26, 36). The nadN gene product,
NadN, was shown to possess NAD pyrophosphatase activity localized to
periplasmic extracts (26). Independently, NucA was
purified from an NTHi strain and shown to be a 5'-nucleotidase (36). By comparison of the nucleotide sequences, it was
apparent that both proteins were encoded by the same gene.
To demonstrate further that NadN and NucA were the same, periplasmic
extracts were isolated from strains Rd and REI1010 and Western blot
analysis was performed with a NucA-specific MAb (36). The
MAb recognized NadN as a protein of approximately 64 kDa (Fig. 2A).
Additional weak bands of about 30 kDa observed only in the Rd extract
may have arisen from NadN degradation by copurified proteolytic enzymes
in the periplasmic extracts.
In enzymatic characterization experiments, purified NucA exhibited not
just 5'-nucleotidase but also NAD pyrophosphatase activity. Purified
NucA sequentially released NMN and then NR from NAD (Fig. 3A). Purified NucA was further assayed to
compare the enzyme activity of NAD with alternative substrates, NMN and
AMP. Lineweaver-Burk double-reciprocal plots were used to determine
Km values for each substrate (Fig. 3B). NAD,
NMN, and AMP exhibited Km values of 0.43, 1.26, and 1.09 mM, respectively.

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FIG. 3.
Enzymatic characterization of NadN. (A) Kinetic analysis
of NAD processing by NadN. [14C]NAD (0.1 mM) was
incubated with 0.012 mg of NadN/ml. Sampling was done at the indicated
time points. Lanes 1 to 7 correspond to reaction times of 1, 2, 4, 8, 16, 32, and 64 min. (B) Determination of Km
values of purified NadN for the substrates NAD, NMN, and AMP; V was
determined as change in OD660 over 20 min with 0.16 µg of
protein. Reaction mixtures were prepared as described earlier
(36). (C) TLC of [14C]NAD used as substrate
for Rd periplasmic extracts. [14C]NAD (10 nCi; 0.1 mM)
was incubated with purified NadN (lane 1), periplasmic extracts of
H. influenzae Rd (lane 2), and REI1010 (lane 3).
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The ability of periplasmic extracts of strains Rd and REI1010 to
metabolize [14C]NAD to [14C]NMN and
[14C]NR was determined by TLC. The periplasmic extract of
Rd hydrolyzed [14C]NAD to [14C]NMN and
[14C]NR (Fig. 3C, lane 2), whereas the extract from the
nadN mutant had no activity against [14C]NAD
(Fig. 3C, lane 3).
Characterization of e (P4).
The OMP e
(P4) is an acid phosphomonoesterase (26, 27) involved in
NAD utilization. To determine a substrate specificity for e
(P4), purified e (P4) and OMP preparations from Rd and
REI1012 were incubated with 14C-labeled NAD, NMN, and NR.
As shown by TLC (Fig. 4A), NMN was dephosphorylated to NR by purified e (P4) and by Rd, but not
REI1012, OMP fractions. The absent 5'-nucleotidase activity in the
REI1012 OMPs was complemented by hel on plasmid pJRP4.
Neither the purified e (P4) nor Rd OMP fractions possessed
the ability to use NAD or NR as substrates (data not shown). Results
from kinetic characterization of e (P4)-mediated hydrolysis
suggest that initial velocity is linearly proportional to enzyme
concentration and that the concentration of released inorganic
phosphate is directly proportional to the time of incubation for the
first 30 min of the reaction at 37°C. The estimated
Km and Vmax of the
e (P4)-mediated hydrolysis of NMN was 0.318 mM and 0.033 mmoles of Pi released/min/mg of e (P4), respectively. Assays were performed in which substrate concentration [S] were varied from 0.03 to 14.1 times the Km
and V varied from 0.01 to 1.01 times the
Vmax (data not shown).

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FIG. 4.
Enzymatic characterization of e (P4). (A) TLC
of [14C]NMN (10 nCi; 0.1 µM) incubated with
purified e (P4) (lane 1) and outer membrane extracts of
strains Rd (lane 2), REI1012 (lane 3), and REI1012 (lane 4)
complemented with pJRP4. (B) Activity of e (P4) phosphatase
point mutants, GK02 and GK03. [14C]NMN (10 nCi; 0.1 µM)
was incubated with Rd (lane 1), GK02 (lane 2), and GK03 extracts (lane
3).
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Growth phenotypes of H. influenzae Rd, REI1012
(
hel::kan), and GK04
(nadN::cat
hel::kan).
We previously
demonstrated that growth of a hel transposon mutant,
hel::TnI0d-bla, was dependent on the
concentration of NAD provided in the growth medium (26).
To confirm the role of e (P4) in the utilization of NAD, a
hel-deficient mutant (REI1012) was constructed. The growth
of Rd and REI1012 on BHI agar plates supplemented with hemin with
various concentrations of NAD, NMN, and NR was tested (Fig.
5).

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FIG. 5.
Growth of mutant H. influenzae Rd strains.
The strains Rd, REI1012 ( hel::kan), and
GK04 (nadN::cat
hel::kan) were grown on BHI agar plates
supplemented with hemin (20 µg/ml) and different nicotinamide
nucleotide concentrations and sources. Growth phenotype is shown with
1.5 and 35 µM NAD, with 1.5 and 15 µM NMN, and with 1.5 and 15 µM
NR, as indicated.
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|
Compared with Rd, REI1012 had significantly reduced growth with
limiting concentrations of NAD (1.5 µM) or NMN (1.5 µM) but had
similar growth with high concentrations of NAD (35 µM) and NMN (15 µM) (Fig. 5). However, REI1012 was able to grow as well as strain Rd
even with NR, and even when the concentrations were limiting (Fig. 5).
To investigate whether e (P4) and NadN are the sole proteins
that are able to process NMN to NR, a double mutant, GK04, was constructed. GK04 was unable to grow on BHI agar containing either NAD
or NMN at 1.5 or 35 µM (Fig. 5). However, in the presence of NR, GK04
grew as well as strain Rd, even at the low NR concentration (1.5 µM)
(Fig. 5).
Uptake of 14C-labeled nicotinamide nucleotides.
The uptakes of 14C-labeled NAD, NMN, and NR by Rd and the
various mutants were compared. Rd incorporated about 20% of the
available 14C-labeled NAD and NMN within 9 min. REI1010 and
REI1012 were unable to take up [14C]NAD (Fig.
6A). Accumulation of
[14C]NMN was not observed for REI1012 and decreased
uptake was detected for REI1010 (Fig. 6B). Rd, REI1010, REI1012, and
GK04 all showed similar accumulations of [14C]NR, at
approximately 11 to 15% (Fig. 6C).

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|
FIG. 6.
Uptake of labeled nicotinamide nucleotide substrates by
H. influenzae. Strains used were H. influenzae Rd, REI1010 (nadN::cat),
REI1012 ( hel::kan), GK03
(helD84A), and GK04
(nadN::cat
hel::kan). Each point represents the mean
value with standard deviation obtained from at least three independent
measurements. Uptake is given as the percentage of the
initial 1 µM substrate concentration. (A) Uptake of
[14C]NAD by Rd, REI1010, and REI1012; (B) uptake of
[14C]NMN by Rd, REI1010, REI1012, and GK03; (C) uptake of
[14C]NR by Rd, REI1010, REI1012, GK03, and GK04.
|
|
Characterization of GK02 (helD86L) and GK03
(helD84A).
The surface location of
e (P4), originally described by Green et al.
(12), led to the question of whether e (P4)
acts only as a phosphomonoesterase or possesses other functions
necessary for nicotinamide nucleotide utilization, e.g., involvement in substrate binding or transport. To test for other functions, two phosphatase-negative e (P4) point mutants, GK02 and GK03,
were constructed. These point mutants are predicted to lack acid
phosphatase activity, as the mutations modify two of the four conserved
aspartates in group C phosphatases (32). The expression of
the mutated e (P4) was verified by Western blot analysis
(Fig. 2B, lanes 4 and 5). The expression of
helD86L was decreased about 30-fold compared to
that of helD84A and wild-type hel,
perhaps due to instability, decreased expression, or insufficient
translocation of the mutated protein. The protein concentrations of
these samples were adjusted to yield equivalent concentrations in
Western blotting and enzymatic assays.
To verify the loss of the phosphomonoesterase activity of the mutated
e (P4) proteins, OMP preparations of Rd, GK02, and GK03 were
incubated with NMN. As shown by TLC, the membrane fractions of GK02 and
GK03 were not able to dephosphorylate NMN (Fig. 4B, lanes 2 and 3). In
contrast, the Rd membrane extracts readily hydrolyzed NMN (Fig. 4B,
lane 1). OMP preparations of GK02 and GK03 were also unable to
hydrolyze pNPP (data not shown). GK02 and GK03 showed attenuated growth
on NAD and NMN, comparable with that of REI1012 (Fig. 5), but all
strains grew well if NR was the nicotinamide nucleotide source (data
not shown).
To confirm the observed phenotypes with the acid phosphatase mutants,
we performed uptake studies with [14C]NMN and
[14C]NR, comparing Rd with REI1012 and GK03. There was no
measurable uptake of 14C-labeled NAD or NMN by GK03, as was
seen with REI1012 (Fig. 6A and B). Rd, REI1012, and GK03 all
incorporated 12 to 15% of the available [14C]NR (Fig.
6C). We conclude that the phosphatase-negative mutants behave exactly
like strain REI1012 in [14C]NAD and
[14C]NMN uptake, in their growth, and in their
ability to dephosphorylate NMN.
 |
DISCUSSION |
Recently, we described two gene products, e (P4) and
NadN, both involved in the utilization of NAD (26).
Individually constructed knockout mutations of both genes gave rise to
mutants with growth deficiencies on media containing various
concentrations of NAD. We demonstrated that the nadN
mutant was unable to grow on NAD-supplemented media and had no
detectable NAD pyrophosphatase activity (26). Subsequently, a gene in NTHi was characterized and called
nucA. NucA was purified to homogeneity (36),
and its activity was defined as a 5'-nucleotidase acting on
phosphorylated nucleosides, especially monophosphate nucleosides (AMP,
CMP, GMP, UMP, and TMP) (36). The NucA amino acid
sequence matched that of the open reading frame HI0206 (NadN) of strain
Rd with nearly complete identity (36); thus, NucA in NTHi
and NadN in Rd are encoded by the same gene. Therefore we have renamed
nucA as nadN, for NAD nucleotidase in H. influenzae.
In this study we showed that both NAD and NMN are substrates for
purified NadN. NadN was shown to exhibit NAD nucleotidase activity with hydrolysis of NAD to NMN and dephosphorylation of NMN to
NR. Consequently, loss of NadN function causes a complete inability to
utilize NAD. Furthermore, the nadN mutant does not take up
as much NR derived from NMN as Rd. However, no difference in
accumulation of NR was observed. Earlier, it was postulated that NR
might serve as the only nicotinamide nucleotide substrate that is able
to cross the cytoplasmic membrane by active transport (4).
For nadN mutants to be able to accumulate NR derived from NMN, another enzyme must also have NMN 5'-nucleotidase activity. A
potential enzyme was the outer membrane lipoprotein e (P4), which was recently identified as an acid phosphatase encoded by hel (26, 27). We had already demonstrated that
dephosphorylation of pNPP by e (P4) is strongly inhibited by
NMN (26), indicating that NMN might serve as an
e (P4) substrate. Furthermore, a hel knockout
mutant had reduced growth if NAD concentrations were low. Therefore, we
reasoned that e (P4) could be involved in some step in the
processing and utilization of NAD.
To test whether NMN, as an intermediate in NAD uptake, is a substrate
for e (P4), TLC analyses were performed to identify NMN-specific phosphatase activity. The substrates used were
14C-labeled NAD, NMN, and NR. Purified e (P4)
protein and e (P4)-containing OMP fractions were able to
catalyze the dephosphorylation of NMN and, subsequently, release of NR
was detected. No activity was observed if NAD or NR was added as
a substrate (data not shown). A second approach was to quantify
the enzyme kinetics, and we determined the Michaelis constant of
e (P4) for NMN. A third approach addressed the uptake of
NAD, NMN, and NR and the ability to use these substrates for growth by
comparing the wild type and the hel mutant. The uptake
analyses indicated that the
hel strain had lost the
ability to utilize NR from NAD and NMN (substrate concentrations used
corresponded to limiting concentrations in growth media) but was able
to take up NR. Consequently, the
hel strain could not
grow with limiting concentrations of NAD and NMN, but it grew well with
NR. The phosphatase activity of e (P4) on NMN appears to be
important for NMN utilization and hence indirectly also for the
utilization of NAD. Therefore, NAD must first be hydrolyzed to NMN, as
the only substrate that e (P4) can utilize appears to be
NMN. To address whether the hel mutant phenotype is solely
explained by loss of phosphatase activity, site-directed point
mutations in hel were constructed by replacing amino acid D
residues at position 84 or 86 with A and L, respectively. The growth,
substrate uptake, and NMN dephosphorylation of these mutants correlated
exactly with that of the
hel mutant. Therefore, we conclude that only the phosphatase activity of e (P4) is
involved in NMN utilization.
In conclusion, e (P4) and NadN are both able to hydrolyze
NMN. Mutants of nadN or hel are able to grow on
high concentrations of NMN (26), but under limiting
concentrations the uptake of substrate and growth abilities are
reduced. A distinct difference between the nadN and
hel mutants can be described as follows: in transport assays
a hel deletion mutant is unable to accumulate NR derived
from NMN; however, in the nadN mutant the accumulation is
only reduced but not completely abrogated because of the remaining e (P4) function. Consistent with that observation, the
Km for NMN of e (P4) is lower (0.318 mM) than that of NadN (1.26 mM). Both results may indicate that
e (P4) rather than NadN is relevant for production of NR
from NMN. As e (P4) is an outer membrane-located lipoprotein
(12), one can speculate that NMN might be a relevant and
available nicotinamide nucleotide source in vivo and is mainly recognized by e (P4) as a substrate.
Since NadN also possesses NMN phosphatase activity, a double mutant of
hel and nadN was characterized to exclude the
possibility that any other enzyme of H. influenzae
participates in the NAD pathway. A double mutant was indeed unable to
grow on NMN, even at high concentrations, and was only able to grow
with and take up the substrate NR. This result suggests strongly that
NR is the final and only substrate which is eventually utilized by
H. influenzae, as shown in the model (Fig.
7). Based on our deductions from these
data, we emphasize that no other enzymatic activity contributes to the
release of NR, from either NMN or NAD, and that NR indeed represents
the minimal nicotinamide nucleotide requirement and acts as the
substrate for an as-yet-unidentified transport system. Both
e (P4) and NadN are immunodominant, conserved antigens, and
both are ubiquitously expressed by typeable and NTHi strains (12,
13, 27, 36). Therefore, it seems predictable that the combined
enzyme action of both gene products is needed by the organism to
support its parasitic lifestyle and to obtain a broader nicotinamide
nucleotide substrate spectrum. We finally conclude that both enzymes,
e (P4) and NadN, act together in the NAD uptake pathway and
are both needed for an efficient processing of NAD and NMN to generate
NR.

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|
FIG. 7.
Model for nicotinamide nucleotide utilization in
H. influenzae. The outer membrane contains e (P4)
and a putative diffusion porin, the periplasmic compartment contains
NadN, and the inner membrane contains a putative transport complex. The
enzymatic activities of the characterized proteins e (P4)
and NadN, which are illustrated (for details, see text), lead to the
uptake of NR.
|
|
 |
ACKNOWLEDGMENTS |
We thank J. Blaß for technical assistance and W. Boos for
helpful discussions and support.
This work was funded by the BMBF (grant 01KI8906), the DFG (grant Re
1561/1-1), and the National Institutes of Health (grants AI44002 and AI07276).
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Zentrum
für Infektionsforschung, Universität Würzburg,
Röntgenring 11, 97070 Würzburg, Germany. Phone: (49) 931 312153. Fax: (49) 931 312578. E-mail: joachim.reidl{at}mail.uni-wuerzburg.de.
 |
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Journal of Bacteriology, July 2001, p. 3974-3981, Vol. 183, No. 13
0021-9193/01/$04.00+0 DOI: 10.1128/JB.183.13.3974-3981.2001
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