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Journal of Bacteriology, July 2001, p. 4157-4166, Vol. 183, No. 14
0021-9193/01/$04.00+0 DOI: 10.1128/JB.183.14.4157-4166.2001
Copyright © 2001, American Society for Microbiology. All rights reserved.
Design of a Protein-Targeting System for Lactic
Acid Bacteria
Y.
Dieye,
S.
Usai,
F.
Clier,
A.
Gruss, and
J.-C.
Piard*
Unité de Recherches Laitières et
Génétique Appliquée, INRA, 78352 Jouy-en-Josas Cedex,
France
Received 5 December 2000/Accepted 16 April 2001
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ABSTRACT |
We designed an expression and export system that enabled the
targeting of a reporter protein (the staphylococcal nuclease Nuc) to
specific locations in Lactococcus lactis cells, i.e., cytoplasm, cell wall, or medium. Optimization of protein secretion and
of protein cell wall anchoring was performed with L.
lactis cells by modifying the signals located at the N
and C termini, respectively, of the reporter protein. Efficient
translocation of precursor (~95%) is obtained using the signal
peptide from the lactococcal Usp45 protein and provided that the mature
protein is fused to overall anionic amino acids at its N terminus;
those residues prevented interactions of Nuc with the cell envelope. Nuc could be covalently anchored to the peptidoglycan by using the cell
wall anchor motif of the Streptococcus pyogenes M6
protein. However, the anchoring step proved to not be totally efficient in L. lactis, as considerable amounts of protein
remained membrane associated. Our results may suggest that the defect
is due to limiting sortase in the cell. The optimized expression and
export vectors also allowed secretion and cell wall anchoring of Nuc in
food-fermenting and commensal strains of Lactobacillus.
In all strains tested, both secreted and cell wall-anchored Nuc was enzymatically active, suggesting proper enzyme folding in the different
locations. These results provide the first report of a targeting system
in lactic acid bacteria in which the final location of a protein is
controlled and biological activity is maintained.
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INTRODUCTION |
Lactic acid bacteria (LAB) are
gram-positive bacteria that include lactococci, streptococci, and
lactobacilli, all of which have long been used as starters for food
fermentations (6). As such, live LAB are regularly
and widely consumed by humans and animals. Although numerous in vivo
beneficial effects (so-called probiotic effects) of LAB have been
claimed, only a few have been unambiguously demonstrated experimentally
(24, 34). Nevertheless, during their frequent passage
through the gastrointestinal tract (GIT), LAB may produce bioactive
molecules that accumulate in vivo. To study the potential probiotic
capacity of LAB, our strategy is to specifically enhance a given
phenotype of LAB and to analyze whether these bacteria, given orally to
animals, induce the expected in vivo effect. These studies are aimed at
enhancing a natural product of LAB (such as a vitamin or enzyme) or
conferring expression of a new molecule, such as an antigen that would
be produced in the gut of humans and animals. One advantage of live
vaccines is that mucosal immunity induced in the GIT may prevent
multiplication of the infectious agents via this common entry point
(16). Also, as LAB may survive transiently in the GIT,
they could be used to deliver digestive enzymes to supplement
pancreatic deficiency in humans or animals. In this regard, some LAB
already exert a positive action in lactose-intolerant consumers by
providing lactase in the gut (14).
We are developing protein delivery systems in LAB for which the protein
of interest is targeted to a defined cell location, i.e., the
cytoplasm, the cell wall, or the medium. To this end, we constructed
expression and export vectors based on (i) Sec-dependent machinery for
protein translocation across the membrane and (ii) sortase-dependent
machinery for protein anchorage to the cell wall. The Sec machinery is
a ubiquitous secretion system comprised of a set of proteins that
mediate translocation of a precursor protein (the mature protein plus
an N-terminal signal peptide) across the cytoplasmic membrane
(39). Upon translocation across the membrane, the signal
peptide is cleaved off by signal peptidase, thus releasing the protein
to the medium (39). The sortase machinery has been
characterized for Staphylococcus aureus (45);
it covalently anchors proteins by their C terminus to the peptidoglycan
(36). Cell surface-anchored proteins are first synthesized
as a preproprotein containing an N-terminal signal peptide and a
C-terminal cell wall anchor (CWA) domain. The ~30-amino-acid CWA
consists of a conserved LPXTG motif, a transmembrane fragment, and a
charged C terminus. Upon translocation of the precursor across the
membrane, the sortase machinery, presumably membrane localized,
catalyzes a transpeptidation reaction consisting of (i) cleavage of the amide bond between the threonine and the glycine residues of the LPXTG
motif and (ii) covalent linkage of the C-terminal threonine to an amino
acid of the peptide cross bridge in the peptidoglycan. Although sortase
has been characterized for S. aureus, homologs are present
in many gram-positive bacteria, including LAB. Indeed, the same
C-terminal structure is present on many cell surface-located proteins
from gram-positive bacteria, including some from LAB (10).
In addition, anchoring of heterologous proteins using the CWA of
proteins A and M6 from S. aureus and Streptococcus pyogenes, respectively, was demonstrated with various
gram-positive hosts, including LAB (28, 29, 41). The
combination of secretion and anchoring systems may provide the needed
versatility for protein targeting in various LAB for use as delivery vectors.
We report the design and optimization of vectors for targeted
heterologous gene expression in LAB. The gene products are addressed to
the cytoplasm, the cell wall, or the extracellular medium. We describe
the effects of different parameters on the expression and targeting
efficiencies of the different vectors in various LAB strains.
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MATERIALS AND METHODS |
Bacterial strains, plasmids, and media.
The bacterial
strains and plasmids used in this study are listed in Table
1. Most plasmid constructions described
below were performed with Escherichia coli TG1, DH5
,
JM101, and JM105 strains or with their recA and
pcnB derivatives (Table 1). E. coli cells were
grown in Luria broth (35) supplemented with thymine at 37°C with shaking. Lactococcus lactis cells were grown in
M17 medium (44) or brain heart infusion media (Difco,
Detroit, Mich.) at 30°C without shaking. Lactobacillus
sakei, Lactobacillus casei, and Lactobacillus
plantarum lactobacilli were grown in MRS medium (9)
at 30°C without shaking. Lactobacillus reuteri cells were grown in MRS medium or APTG10 (32) at 37°C in anaerobic
jars. Where appropriate, antibiotics were added as follows: for
E. coli, erythromycin (150 µg/ml) and ampicillin (100 µg/ml); for L. lactis, L. casei, L. sake, and L. plantarum, erythromycin (5 µg/ml) and chloramphenicol (10 µg/ml); and for L. reuteri,
erythromycin (30 µg/ml).
DNA manipulation and transformation procedures.
General
molecular biology techniques were performed essentially as methods
described previously (35). Plasmid DNA was extracted from
E. coli as described previously (3), and
plasmid DNA was extracted from L. lactis, L. sakei, and L. reuteri as described previously
(28). The protocol for plasmid extraction from L. casei and L. plantarum was similar to that used for
L. sakei. Plasmids were established by electroporation as
described for L. lactis and S. thermophilus
(20), L. reuteri (4), and L. casei and L. sakei (2). For L. plantarum, the following protocol was used (R. Jimenez-Diaz,
personal communication). An overnight preculture was prepared in
MRS with 1% glucose and 0.1% glycine. The preculture was diluted 1:40
(vol/vol) in the same medium, grown to an optical density at 600 nm
(OD600) of 0.6, and chilled on ice. Bacteria were
harvested by a 10-min centrifugation at 6,800 × g and
were washed successively in 1 culture volume of ice-cold 1 mM
MgCl2 solution and in 1 culture volume of 30%
polyethylene glycol 3000 plus 10% glycerol. The cells were resuspended
in a 1:100 culture volume of 30% polyethylene glycol 3000 plus 10% glycerol. Electroporation was performed using 50 µl of competent cells and a maximum of 5 µl of plasmid DNA in 0.2-cm-wide
electroporation cuvettes. Settings of 1.5 kV, 25 µF, and 400
were
used with the Gene Pulser (Bio-Rad, Hercules, Calif.). Electroporated
cells were transferred into 0.5 ml of MRS containing 0.5 M sucrose plus 0.1 M MgCl2 and incubated 2 h at 30°C
before plating on selective media.
Nuclease plate activity assays.
Nuc activity was detected
using the metachromatic agar-diffusion method with toluidine blue-DNA
agar (TB-D agar [18]). To identify
Nuc+ clones, plates were overlaid with TB-D agar
and analyzed for pink colonies. To detect Nuc in the cytoplasmic
compartment of LAB, cells were lysed under mild conditions; the
bacterial pellet was resuspended in TES (10 mM Tris-HCl, pH 8.0, 1 mM
EDTA, 25% sucrose) plus 5 mg of lysozyme/ml and incubated at 37°C
for 30 min. The resulting protoplasts were treated with 0.1% sodium
dodecyl sulfate (SDS) and boiled for 10 min (note that nuclease is
readily renatured after this treatment). Nuc activity in lysates was
analyzed by spotting aliquots on TB-D agar and checking for pink halos after 37°C incubation. For detection of Nuc activity in culture supernatants, bacterial cultures were centrifuged for 5 min at 5,700 × g, and supernatants were filtered using
0.2-µm-pore-size filters (low-protein-retention filters; Millipore,
Molsheim, France). Filtrates were then spotted on TB-D agar and
observed for pink halos after a 37°C incubation.
Cell fractionation, protein extraction, and Western blot
analysis.
Medium, cell wall, and protoplast fractionation and
protein extractions were performed as previously described
(28). For further fractionation between membranes and
cytoplasm, protoplasts were washed with TES and resuspended in 500 µl
of water. The suspension was subjected to five freeze-thawing cycles.
Membranes were pelleted by a 45-min centrifugation at 21,000 × g at 4°C and resuspended in 100 µl of TE (10 mM
Tris-HCl, pH 8.0, 1 mM EDTA) containing 1% SDS per
OD600 unit. Cytoplasmic proteins were recovered
by trichloroacetic acid precipitation and resuspended in 100 µl of TE
per OD600 unit. Equal volumes of 2× loading
buffer were added to all samples. Extracts were run on
SDS-polyacrylamide gel electrophoresis (PAGE) (12% acrylamide) gels
(19). Electroblotting on polyvinylidene difluoride
membranes (Millipore) and antibody reactions and detection (enhanced
chemiluminescence) were performed according to the manufacturer's recommendations. Quantitation of Nuc was performed by scanning Western
blots and comparing signals to those of known amounts of a purified
commercial NucA (Sigma). Amounts are presented as milligrams per liter
of culture corrected to an OD600 of 1.
Pulse-chase analysis.
Pulse and chase conditions
(22) and immunoprecipitation (25) were
performed as previously described. Extracts were run on SDS-PAGE (16%
acrylamide) gels.
Cloning strategy.
Fusion genes using the nuc
reporter (Fig. 1) were constructed via
different intermediate plasmids (Table 1). The general strategy was to
construct individual cassettes, each carrying promoter, terminators,
export signals, or reporter genes, and to join them in different
combinations; this strategy generates a flexible system in which a
given cassette can be replaced to modify the nature of or the level of
a given phenotype. Note that oligonucleotides discussed below, which
were named "a" through "j," are described at the end of this
section.

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FIG. 1.
Fusion gene constructs with the Nuc reporter and
expected cell location of final products.
P59, lactococcal promoter;
sp, signal peptide from the M6 preproprotein
(spM6) or from the Usp45 preprotein
(spUsp45); nucA, structural
gene for staphylococcal NucA; cwaM6,
sequence specifying the CWA domain from the M6 preproprotein;
t1t2, transcriptional terminators; mcs1
and mcs2, multiple cloning sites; cyt, cytoplasm; mb,
membrane; cw, cell wall; md, medium. The vertical black arrows
in the amino acid sequences of SPM6 and of
SPUsp45 indicate the signal peptidase cleavage sites;
numbers in parentheses indicate the global net charge of the five amino
acids following the cleavage sites.
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Cloning of the various cassettes.
The
P59 promoter cassette (48)
was obtained by cloning the 130-bp BamHI-KpnI
fragment of pVE5207 (28) into
BamHI-KpnI-treated pUC18; the resulting pVE5220
plasmid was then digested by BamHI-PstI to delete
unwanted restriction sites, treated with Klenow and T4 DNA polymerase,
and self-ligated to yield pVE5224 (Table 1). Plasmid pVE5216 was
obtained by cloning the 130-bp BamHI-KpnI fragment of pVE5207 (28) into
BamHI-KpnI-treated pUC19.
Two cassettes specifying the M6 (spM6)
and Usp45 (spUsp45) signal peptide
were constructed. (i) The sequence encoding the M6 signal peptide was
obtained by cloning the 1.6-kb EcoRI-BamHI fragment (containing the emm6 gene) from pVE5201
(28) into EcoRI-BamHI-treated pUC19
to yield pVE5218. The latter plasmid was further digested by
StyI-XbaI, and the 2.8-kb fragment was
self-ligated; the resulting pVE5222 plasmid, carrying
spM6, was ClaI digested,
blunted with Klenow, and self-ligated so that an NruI site
was created 5' of spM6 in the
resulting pVE5228 plasmid. (ii) The
spUsp45 cassette was obtained
by PCR amplification from the usp45 gene, using
oligonucleotides a and b and pVE3588 as the template. The PCR product
was blunted using Klenow and T4 DNA polymerase and cloned into
SmaI pBluescript II KS(+) (pBSII-KS+)
to yield pVE5247.
The cassette containing the nucA reporter gene was obtained
by PCR amplification from
pBS::P59::nuc
(22) using oligonucleotides c and d. The 0.5-kb PCR
product was digested by SalI and ClaI and cloned
into SalI-ClaI-linearized
pBSII-KS+ to yield pVE5232.
The cassette corresponding to the CWA signal
(cwaM6) was obtained by deleting the 5'
HindIII fragment of emm6 from pVE5201 (28); the HindIII ends were blunted using
Klenow and self-ligated to yield pVE5221, which contained the 3' end of
emm6 encoding the 140 C-terminal amino acids of M6 proprotein.
Two cassettes specifying transcriptional terminators were used. One was
present on pVE8001 and contained the sequence specifying the
trpA operon terminator of E. coli
(8), and it was a gift from I. Poquet (30).
The T1T2 terminators from the rrnB operon of E. coli (27) (a gift from F. Chedin; see reference
5 for a similar construct) were cloned as an
XbaI fragment into pBSII-SK+ to yield pVE5239.
Assembling of the cassettes.
The cassettes described above
were assembled as follows.
spM6::cwaM6
(present on pVE5229) was obtained by ligation of the ScaI-SalI 2.4-kb fragment of pVE5221 to the
corresponding 1.0-kb fragment of pVE5228.
P59::spM6::cwaM6
(present on pVE5231) was obtained by fusing the
ScaI-EcoRI 1-kb fragment of pVE5224 to its 2.5-kb
counterpart of pVE5229.
P59::spM6::nucA::cwaM6
(present on pVE5233) was constructed by cloning the 0.5-kb
SalI-ClaI nucA fragment of pVE5232
into SalI-ClaI-digested pVE5231.
P59::spM6::nucA::t1t2 (present on pVE5240) was obtained by ligation of the 1.7-kb
ClaI-BstXI fragment of pVE5233 to the
ClaI-BstXI 2.0-kb fragment of pVE5239. A fusion
of pVE5233 and pVE5240 to a pAM
1-derived plasmid, pIL252, was formed
by ligation at their BamHI site to yield pVE5236 and pVE5243, respectively; it was established in both E. coli
and L. lactis MG1363.
P59::nucA::t1t2
(present on pVE5516) was formed by first deleting the pBS part of
pVE5243 by a SphI-BstXI digestion. It was treated
with T4 DNA polymerase and self-ligated before introduction into
L. lactis. The resulting pVE5514 plasmid was further
digested with MslI and SalI, treated with T4 DNA
polymerase, and self-ligated to yield pVE5516. This treatment removes
the cassette corresponding to spM6 and
introduces a TTG start codon recognized in L. lactis
(47).
ttrpA::P59
(present on pVE5253SX) was constructed by fusing the
ScaI-BamHI-Klenow-treated 1.0-kb fragment of
pVE5216 to the 1.8-kb ScaI-EcoRV fragment of
pVE8001. The SalI site was removed from the resulting
pVE5253 by a SalI-XhoI digestion and
self-ligation to yield pVE5253SX.
spUsp45::nucA::cwaM6 (present on pVE5249) was obtained by ligation of the
ApoI-SalI 0.18-kb fragment of pVE5247 to the
3.8-kb ApoI-SalI fragment of pVE5233.
spUsp45::nucA-::cwaM6::t1t2
was present on pVE5250 and pVE5251. pVE5250 was obtained by cloning
t1t2 carrying a 0.17-kb XbaI fragment of pVE5239
into XbaI-linearized pVE5249. An EcoRV restriction site was inserted between nucA and
cwaM6 by cloning annealed oligonucleotides
e and f into NheI-ClaI-digested pVE5250 to yield
pVE5251.
spUsp45::nucA::t1t2
(present on pVE5252) was obtained by an NheI-SpeI
digestion of pVE5251, followed by self-ligation of the 3.6-kb fragment;
this deleted cwaM6 and introduced an
in-frame stop codon between nucA and t1t2.
spUsp45::nucA::t1t2
and
spUsp45::nucA::cwaM6::t1t2
fusions were recovered by ApoI-HpaI digestion of
pVE5252 and pVE5251, respectively. They were inserted into
SmaI-EcoRI pVE5512 (a pIL252-derived plasmid; Table 1) to yield pVE5517 and pVE5518, respectively.
ttrpA::P59::spUsp45::nucA::t1t2 (present on pVE5523) and
ttrpA::P59::spUsp45::nucA::cwaM6-t1t2 (present on pVE5524) were obtained by fusing pVE5253SX to pVE5517 and pVE5518, respectively, at their EcoRI sites. The
functional orientation for transcription was detected by
nuclease-positive phenotypes of the transformants.
ttrpA::P59::spUsp45::nucA::cwaM6
105::t1t2 was present on pVE5546. pVE5524 was digested by
EcoRV-BsgI, and the 7.6-kb fragment was
recovered. It was ligated to the
EcoRV-BsgI-digested PCR product obtained with
oligonucleotides i and j, using pVE5524 as the template, to yield
pVE5546.
ttrpA::P59::nucA::t1t2
was present on pVE5529. A fragment specifying
ttrpA::P59
was obtained by PCR amplification using oligonucleotides g and h and
pVE5523 as the template; this fragment was digested by
BspLU11I-SalI and cloned into
BspLU11I-SalI-digested pVE5523. For the cloning
of ttrpA::P59::spUsp45::nucA::t1t2
in L. reuteri cells, the
ApaI-BamHI 1-kb fragment of pVE5523 was cloned
into ApaI-BamHI-digested pLEM7 to yield pVE5537.
Oligonucleotides (relevant enzyme restriction sites [in bold] and
restriction enzymes [in parentheses] are given) were as follows: a,
5'-AGTCGCGAAACCGAACTTAATGGGAGG-3'
(NruI); b, 5'-TAGTCGACCGCATCTTGTTTAGCAATATCTGAG-3'
(SalI); c,
5'-GTCGACCCATGGTCAACTAAAAAATTACATAAAGAACC-3' (SalI); d,
5'-ATCGATTTGACCTGAATCAGCGTTGTCTTC-3'
(ClaI); e,
5'-ATCGATCTCGAGATATCGCTAGC-3'
(ClaI, EcoRV, NheI); f,
5'-GCTAGCGATATCTCGAGATCGAT-3'
(NheI, EcoRV, ClaI); g,
5'-CTGGACGACATGTGACGGTATCGATAGC-3'
(ClaI); h,
5'-CGGCCAGGTCGACCATAACTGTTCTTTTTTAATT-3' (SalI); i,
5'-GCTCGATATCGTTACCATCAACAGGTGAAA-3'
(EcoRV); j,
5'-GCCAGTTTCGTCGTTAAATGCCCTTT-3'.
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RESULTS |
Targeting Nuc in L. lactis
We examined whether
a heterologous enzyme could be targeted to various cell compartments of
L. lactis. For this purpose, the S. aureus
nucA open reading frame was fused to either (i) the strong
P59 lactococcal promoter (plasmid
pVE5516) for cytoplasmic localization of Nuc (Fig. 1A), (ii) the
P59 promoter plus the M6 signal
peptide (plasmid pVE5514) for extracellular secreted Nuc (Fig. 1B), or
(iii) the promoter and signal peptide described above (ii) with an
additional CWA domain from the M6 proprotein (plasmid pVE5236) for cell
wall-anchored Nuc (Fig. 1C). These fusions were established in
L. lactis cells on the low-copy-number replicon pIL252
and analyzed phenotypically and biochemically. Nuc production by
bacterial colonies was examined (Fig. 2).
As expected, no Nuc was detected for colonies harboring nucA (pVE5516), consistent with its cytoplasmic location
(Fig. 2A). In contrast, upon bacterial lysis under mild conditions, strong Nuc activity was detected, indicating that it is indeed produced
but not exported to the external medium (not shown). Colonies of
L. lactis harboring
spM6::nucA (on
pVE5514) yielded pink halos on a plate assay, as expected if Nuc is
exported (Fig. 2B); activity was detected in the culture supernatant,
indicating that Nuc is indeed both exported and secreted (not shown).
Colonies of L. lactis bearing
spM6::nucA::cwaM6
(on pVE5236) also produced pink halos on TB-D agar (Fig. 2C), but only
a little activity was detected in the culture supernatant (not shown),
indicating that Nuc is exported to the cell surface of L.
lactis but is not released in the supernatant. The halos formed
by strains expressing spM6::nucA::cwaM6
(on pVE5236) were smaller than those formed by strains expressing
spM6::nucA (on
pVE5514). This is expected since, in the former, Nuc is cell wall bound
and therefore does not diffuse in the medium, while in the latter it is
secreted.

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FIG. 2.
Nuclease activity detection in clones of L.
lactis MG1363 expressing nucA in cytoplasm
(nucA on pVE5516) (A), supernatant
(spM6::nucA on
pVE5514) (B), or cell wall
(spM6::nucA::cwaM6
on pVE5236) (C). For an explanation, see the text.
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Nuc distribution between protoplast, cell wall, and supernatant
fractions was analyzed by Western blotting using NucA-specific antibodies (Fig. 3). In clones harboring
nucA (on pVE5516), the majority of Nuc was detected in
protoplasts, which corroborates results obtained by phenotypic
analysis. However, a significant fraction was also present in cell
walls; use of a cytoplasmic marker, PepX (7), confirmed
that the above observation was not due to cell lysis. As Nuc activity
was not detected upon plating of the clones on TB-D agar (Fig. 2A) and
as no potential sequence acting as a signal peptide could be detected
in the Nuc amino acid sequence, we cannot at present explain detection
of the enzyme in the cell wall fraction.

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FIG. 3.
Expression and targeting of Nuc in L.
lactis. Western blottings using anti-NucA polyclonal antibodies
were performed on fractionated protein extracts from L.
lactis MG1363 cells expressing the fusion genes indicated on
top. The strains contained plasmids pVE5516, pVE5514, and pVE5236,
which express nucA,
spM6::nucA, and
spM6::nucA::cwaM6,
respectively. P, protoplasts; CW, cell wall; SN, supernatant. Purified
NucA was used as a reference, and the positions of molecular mass
standards (in kilodaltons) are indicated.
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Analysis of Nuc distribution in L. lactis expressing
spM6::nucA (on
pVE5514) showed that about half of the signal is present as two bands
in the supernatant fraction. In this construct, processing of the
signal peptide should give rise to a NucA protein containing additional
amino acids at the N and C termini (Fig. 1; see Materials and Methods).
We consider it likely that these tails are susceptible to proteolysis,
giving rise to the NucA-size protein as seen in Fig. 3. The protoplast
fraction of cells expressing
spM6::nucA (pVE5514) also produced two bands: a high-molecular-mass band corresponding in size to the Nuc precursor (calculated molecular mass
of 22.8 kDa) and the other corresponding to Nuc. We believe that the
latter may have resulted from degradation of the precursor. A band of
strong intensity and corresponding in size to NucA was also visible in
the cell wall fraction. Given that no anchoring signal was present in
the analyzed fusion, we wondered whether Nuc association to the cell
wall could be due to a noncovalent linkage. In the above fusions, the
molecular environment of the prepro-M6 signal peptidase cleavage site
was conserved by maintaining the five N-terminal amino acids (RVFPR) of
the mature M6 protein (Fig. 1C); since these amino acids provide a
positive net charge of +2 at the N terminus of Nuc, we asked whether
the interaction observed between Nuc and the cell wall with the
spM6::nucA
construct (on pVE5514) could be due to electrostatic interactions. We
reasoned that salt addition could alleviate such an interaction and
therefore cultivated the
spM6::nucA-expressing
strain in medium containing 170 or 340 mM NaCl. Cell fractions were
analyzed by Western blotting. Protein expression levels were comparable
in the presence or absence of salt in the medium. However, Nuc
association with the cell wall was abolished when salt was present
during growth (not shown), suggesting that this association is
electrostatic. Interestingly, the apparent Nuc degradation product (cf.
above) was reduced in 170 mM NaCl and nearly absent at 340 mM NaCl.
This may suggest that the proteinase activity involved in the
degradation of Nuc is inhibited by salt or that Nuc folding is
accelerated when salt is present.
For cells expressing nucA with a C-terminal fusion
containing 105 amino acids plus the M6 CWA domain
(spM6::nucA::cwaM6
[on pVE5236]), no Nuc was detected in the supernatant fraction.
Multiple bands migrating between 30 and 35 kDa were detected in the
cell wall fraction, as previously reported for cell wall-anchored
proteins. This is attributed to the presence of peptidoglycan fragments of various sizes that are covalently linked to the surface protein after digestion with a muramidase (37). These bands could
also correspond to degradation products. A faint band corresponding in
size to NucA was also visible in the cell wall fraction. In the
protoplast fraction, an ~38-kDa major band corresponded in size to
the precursor protein. For this construct, ~20% of precursor was
processed and anchored to the cell wall.
To summarize, the constructed vectors enabled Nuc to be targeted to the
desired cell compartment. Nevertheless, precursor processing was
incomplete in the case of secreted and cell wall-anchored fusions and
some Nuc was unexpectedly detected in the cell wall fraction of
cytoplasmic and secreted fusions.
Signal peptide of Usp45 followed by anionic amino acids at N
terminus of NucA improves protein export and prevents interaction of
secreted Nuc with cell wall.
Protein targeting in the experiment
described above was limited by incomplete protein export and
interactions between secreted Nuc and cell wall. We therefore exchanged
the signal peptide of prepro-M6 with that of pre-Usp45. Five additional
amino acids (DTNSD) at the N terminus of mature Usp45 resulted in the
creation of a negative net charge of
2 at the NucA N terminus (Fig.
1C), which was recently shown to improve secretion efficiency in
L. lactis (22). Targeting efficiency of the
cytoplasmic control (containing the N-terminal DTNSD residues), cell
wall, and secreted constructions was examined by Western analysis (Fig.
4). Expression of nucA (from
plasmid pVE5529) in L. lactis resulted in cytoplasmic Nuc
accumulation; unlike the results above, which were obtained with
pVE5516, no Nuc was detected in the cell wall fraction (compare Fig. 3
and 4).

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FIG. 4.
Targeting Nuc to cytoplasm (nucA on
pVE5529), supernatant
(spUsp45::nucA on
pVE5523), or cell wall
(spUsp45::nucA::cwaM6
on pVE5524) in L. lactis. Protein extracts were analyzed
by Western blotting using anti-NucA antibodies. Forms not indicated by
arrows are presumably protein degradation products. P, protoplasts; CW,
cell wall; SN, supernatant. The positions of molecular mass standards
(in kilodaltons) are indicated.
|
|
Secretion efficiency of Nuc in L. lactis expressing
spUsp45::nucA
(from pVE5523) was assessed. The protoplast fraction contained a faint
band corresponding to the size of the precursor (Fig. 4). The majority
(95%) of the protein was in the supernatant fraction. Thus, secretion
of this protein is highly efficient compared to that observed from the
fusion with the M6 signal peptide (compare Fig. 3 and 4). This suggests
that precursor processing is more efficient with the signal peptide and
N-terminal environment of Usp45 than with that of M6. Also, all of the
exported Nuc was detected in the supernatant fraction and not in the
cell wall fraction; no interactions were detectable between the Nuc
moiety and cell wall. Interestingly, compared with previous results
(Fig. 3), Nuc secreted by this vector underwent only a little
proteolytic cleavage.
Analysis of
spUsp45::nucA::cwaM6
(on pVE5524) revealed improved targeting of the fusion to the cell wall
fraction compared to that of
spM6::nucA::cwaM6
(on pVE5236; compare Fig. 3 and 4). Export efficiency is enhanced to
ca. 40%. As seen above (Fig. 3), NucA antibodies reacted with several
bands in the cell wall fraction. A multiple banding pattern was also
observed in the protoplast fraction; this point is addressed below.
Taken together, these results show that efficient export and proper
localization of Nuc can be achieved by the use of the Usp45 signal
peptide followed by anionic amino acids.
What is the limiting step in the processing of cell wall-anchored
proteins?
The results above suggest that the signal peptide of
Usp45 followed by anionic residues, which markedly improves secretion of Nuc, is less effective in exporting NucA-CWAM6. We first
hypothesized that the 105-amino-acid sequence upstream of the
C-terminal anchoring signal itself could impair precursor
translocation. This sequence is indeed rich in glycine and proline
residues that are known to be turn-promoting amino acids in proteins.
We postulated that such a structure could be poorly translocated across
the membrane. A fusion,
spUsp45::nucA::cwa
105,
in which this sequence was deleted was constructed and expressed in
L. lactis. Comparison of the profiles obtained with
spUsp45::nucA::cwa and
spUsp45::nucA::cwa
105
showed no significant difference in the proportion of precursor
processed and exported to the cell wall, i.e., about 40% Nuc was
anchored to the cell wall while 60% remained unprocessed in the
protoplasts (Fig. 5). However, the
construct NucA-CWA
105 appeared as one major
band in the cell wall fraction. This may suggest that the
multiple-banding pattern observed with whole CWA was due, in our case,
to degradation rather than to the linkage of Nuc to peptidoglycan
fragments as was previously suggested (37). In the
SPUsp45-NucA-CWA
105 construct,
the absence of the glycine- and proline-rich 105-amino-acid peptide might have resulted in a better protein folding and thereby lower susceptibility to proteolysis. Alternatively, Nuc anchored to the cell
wall with CWA
105 was presumably located
closer to the cell envelope and could therefore be more protected from
proteolysis than its counterpart anchored with whole CWA. It is
noteworthy that both Nuc constructions were enzymatically active (not
shown). However, for NucA-CWA
105, the
appearance of pink halos on TB-D agar took longer, possibly because of
reduced access of the enzyme to its DNA substrate.

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|
FIG. 5.
A protein containing the complete CWA region
CWAM6 is susceptible to degradation. Fusions
spUsp45::nucA::cwaM6
(on pVE5524) and
spUsp45::nucA::cwaM6 105
(on pVE5546) were expressed in L. lactis cells, and
protein extracts were analyzed by Western blotting, using anti-NucA
antibodies. P, protoplasts; CW, cell wall; SN, supernatant. The
positions of molecular mass standards (in kilodaltons) are indicated.
*, Nonmatured Nuc may correspond to
SPUsp45-NucA-CWAM6 or to
NucA-CWAM6. Forms not indicated by arrows are presumably
protein degradation products.
|
|
The nature of the Nuc species (Fig. 5, nonmatured Nuc) remaining in the
protoplast fraction in cells expressing
spUsp45::nucA::cwaM6 was examined by fractionating the protoplast between membranes and
cytoplasm. Western analysis shows that nonmatured Nuc species are
exclusively in the membrane and are not in the cytoplasm (Fig. 6). We therefore believe that the
membrane-bound species corresponds to NucA-CWAM6
rather than to
SPUsp45-NucA-CWAM6, which
we would expect to also be present in the cytoplasm fraction. Following this reasoning, we propose that cell Sec machinery does efficiently process the precursor and that sortase processing is limiting for
protein maturation.

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FIG. 6.
The fusion product of
spUsp45::nucA::cwaM6
accumulates in the membrane fraction and not in the cytoplasm. Cells
containing pVE5524 were fractionated into cytoplasm (CYT), membrane
(MB), and cell wall (CW), and samples were analyzed by Western
blotting, using anti-NucA antibodies. Refer to the text for the nature
of nonmatured Nuc.
|
|
To examine this hypothesis, pulse-chase experiments were conducted with
L. lactis cells expressing
spUsp45::nucA::cwaM6.
Pulse-labeled precursor
SPUsp45-NucA-CWAM6 was
present for 2 min after the chase (Fig.
7). In contrast, the
NucA-CWAM6 form was only slowly processed into
anchored Nuc, as it was present for at least 20 min after the chase.
Note also that a single anchored species was detected, in keeping with
the proposal that the multiple-banding pattern may correspond to
degradation products. These observations reinforce the hypothesis that
SPUsp45-NucA-CWAM6 is
processed and translocated efficiently across the membrane while
sortase processing of NucA-CWAM6 is slow and
incomplete.

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FIG. 7.
Anchoring is a limiting step for cell wall sorting of
SPUsp45-NucA-CWAM6. Cells containing pVE5524
were pulse labeled for 2 min using [35S]methionine and
chased with nonradioactive methionine. One minute before the chase and
at time intervals 1, 2, 3, 5, and 20 min after the chase, an aliquot of
culture was trichloroacetic acid precipitated and immunoprecipitated
with anti-NucA antibodies. The immunoprecipitates were run on an
SDS-PAGE (16% acrylamide) gel, and the gel was autoradiographed.
|
|
Nuc can be secreted and cell wall anchored in lactobacilli.
Lactobacilli are of great potential interest as vectors of secretion or
for surface display of heterologous proteins. The export capacities of
commensal lactobacilli, e.g., L. casei and L. reuteri, and food-fermenting lactobacilli, e.g., L. sakei and L. plantarum, were tested with the fusions
described above. Plasmids pVE5523
(spUsp45::nucA)
and pVE5524
(spUsp45::nucA::cwaM6)
were used for expression in L. casei, L. sakei,
and L. plantarum. The spUsp45::nucA
fusions was recloned into pLEM7 for expression in L. reuteri
cells. All strains expressed nucA, as shown by the appearance of pink halos around colonies (not shown). In L. casei, L. sakei, and L. plantarum cultures,
the majority of Nuc was present in the supernatant as a single band
(Fig. 8a, b, and c). Nuc export was very
efficient in L. casei and L. sakei cells, while
in L. plantarum cells, a portion of precursor (~15%)
remained unprocessed in protoplasts. In L. reuteri cells,
the secreted
spUsp45::nucA fusion was efficiently processed. However, the resulting Nuc was poorly
released and the majority remained cell wall associated (Fig. 8d).

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FIG. 8.
Secretion and anchoring of Nuc in lactobacilli. Fusions
spUsp45::nucA and
spUsp45::nucA::cwaM6
were expressed using pVE5523 and pVE5524, respectively, for L.
casei, L. sakei, and L.
plantarum. Fusion
spUsp45::nucA was
expressed in L. reuteri by using pVE5537. Protein
extracts were analyzed by Western blotting using NucA antibodies. P,
protoplasts; CW, cell wall; SN, supernatant. The positions of molecular
mass standards (in kilodaltons) are indicated.
|
|
The capacity to anchor Nuc to the cell wall was demonstrated in
L. casei, L. sakei, and L. plantarum
cells. The presence of a single cell wall-associated species in these
extracts suggests that less degradation may occur at the surface of
lactobacilli than of L. lactis cells. A general estimation
of expression levels was made by scanning Western blots and comparing
the signals to those of internal standards of purified commercial NucA.
In the case of exported fusions (i.e., both cell wall-anchored and
secreted forms), Nuc was present at a 2 to 4 mg/liter range in all LAB strains; amounts were lower, i.e., 1 to 2 mg/liter, in the case of
cytoplasmic Nuc (not shown). Taken together, the above results show
that heterologous protein fusions can be successfully targeted in
different locations in several Lactobacillus strains.
 |
DISCUSSION |
Secretion and cell wall anchoring of proteins (herein
referred as protein export) are key functions in the interactions of LAB with their environment. Optimization of protein export is valuable
in using these food-grade microorganisms in biotechnological applications both in vitro and in vivo in humans and animals. Our goal
in this work was to design a system to target proteins in the desired
location in different LAB species for use in numerous applications in
food manufacturing and in health improvement. We therefore designed
vectors that could target a model protein (Nuc) to the cytoplasm, cell
wall, or medium by using L. lactis as a LAB model.
Nuc as a reporter to monitor protein targeting and conformation
state.
The staphylococcal Nuc meets several required criteria for
an efficient export reporter protein: (i) it is easily detected by
simple activity tests on solid medium (18) or by
immunoassays on Western blots (17), (ii) it is a
convenient protein for biochemical analyses in that it is stable up to
the boiling point and can be readily renatured after treatment by SDS
and organic solvents, and (iii) it is inactive in the cytoplasm. The
nuc gene encodes a preproprotein. The active 168-amino-acid
proprotein, called NucB, is matured by several bacteria to form active
NucA (17, 22, 23, 25, 38). Proprotein processing of NucB
to NucA is mediated by the cell surface housekeeping proteinase HtrA in L. lactis (31). In our studies, only the
nucA gene was used, thus reducing susceptibility of a fusion
protein to proteolytic degradation. Using this reporter, we showed that
Nuc remained active when it was anchored to cell wall of both
lactococci and lactobacilli, even if the 105-amino-acid peptide spacer
between Nuc and the anchor motif was removed. This indicates that
proteins with a globular structure, such as Nuc (1), can
fold properly, even when they are in close proximity to the
peptidoglycan. This capacity is important for all applications of LAB
involving surface display of proteins where spacial structure is
crucial (e.g., for enzymes or conformational epitopes).
Signal peptide and N-terminal environment of Usp45 allows optimal
translocation of precursors.
Based on the hypothesis that the
unusually long M6 signal peptide might be necessary for protein sorting
to the cell wall, we first used it to drive the export of both secreted
and anchored Nuc. It appeared that it was a poor export signal in both
cases, as much precursor remained unprocessed in the protoplast. The change of SPM6 to SPUsp45
greatly improved the situation: almost all precursor was processed and
exported in the case of secreted Nuc, and the proportion of exported
protein that was cell wall anchored was doubled. Protein Usp45 is the
major secreted protein in L. lactis (46). We
show here that its signal peptide plus first five amino acids of the
mature protein are very efficient to drive secretion of heterologous
proteins; this may reflect sequence or conformational features of Usp45
that are well recognized by the Sec machinery of L. lactis.
Nature of protein N terminus affects protein release in
medium.
Efficient protein translocation across the membrane
requires that the N terminus of a mature protein is less cationic than the N terminus of its signal peptide (51). This
"positive inside rule" assures that the most cationic region of the
precursor, i.e., the N terminus of the signal peptide, reacts with the
anionic phospholipid heads on the inner side of membrane and determines the proper orientation of the signal peptide in the membrane
(51). We propose here an additional effect of the charge
at the protein N terminus. A fusion in which the five amino acids just
after the signal peptide have a net positive charge remains (at about 30%) associated to the cell wall instead of being released in the
medium (Fig. 3). This was observed using SPM6 as
well as SPUsp45 (not shown). Addition of NaCl
abolished this association, thus suggesting its electrostatic nature.
Similar observations were made with Corynebacterium
glutamicum (23). When the N-terminal amino acids were
changed to five amino acids exhibiting a global net charge of
2,
translocated Nuc was then entirely released in the medium (Fig. 5). The
presence of anionic teichoic acids at the cell surface of gram-positive
bacteria may interfere with protein targeting via nonspecific
association of proteins with cationic tails, as exemplified here
(26). Thus, an anionic spacer at the N terminus of mature
proteins would not only improve protein translocation (22)
but may also prevent nonspecific association with cell walls and
possible further degradation. An alternative explanation to the
observed phenomenon is that the short amino terminus of the two Nuc
variants influences the overall protein folding, which in turn affects
protein association with the cell wall. In either case, the choice of
N-terminal amino acids may be important in protein localization when
designing export systems for gram-positive bacteria.
Further improvements of the system.
In several experiments, we
observed degradation products in all compartments, i.e., cytoplasm,
cell wall, and supernatant. The extent of degradation varied according
to the proteinaceous construct, i.e., we observed significant
degradation of a Nuc derivative secreted using
SPM6 and little degradation when Nuc was secreted
using SPUsp45. The observation that NucA itself
is not degraded is consistent with its stable globular structure (1). However, amino acid tails that were added at the N
and C termini of NucA seemed to be highly susceptible to proteolysis, especially in SPM6-NucA. Degradation also varied
according to the host strain tested, i.e., more degradation was
observed in lactococci than in lactobacilli. We consider that in
lactococci, the cell surface housekeeping proteinase HtrA involved in
the processing of NucB into NucA is probably responsible for the
degradation of amino acids tails fused at the ends of NucA
(31). This proteolytic activity was not detected when salt
was added to the culture medium. This may be due to HtrA inhibition or
to a more rapid refolding and release of the potential HtrA target
substrate. In either case, since these salt concentrations did not
affect the L. lactis growth rate, use of these conditions
could be a means of reducing proteolytic degradation when using
L. lactis for biotechnological purposes.
An alternative way to improve protein yield will be to modify LAB host
factors. Our studies suggest that, at the expression level used,
sortase components may be limiting for complete and efficient anchoring
and may even affect precursor maturation. Using the vectors for
efficient protein targeting developed here, it will be of interest to
overcome bottlenecks of export and anchoring. For example, (i)
components of the sortase machinery could be overexpressed in order to
achieve a better export and anchorage of cell surface proteins, (ii)
lower proteolytic degradation could be achieved by disrupting the cell
surface housekeeping proteinase htrA and/or its cytoplasmic
counterpart clpP (13), and (iii) other genes
that encode chaperone proteins involved in protein export and stability
could be overexpressed (39).
Protein targeting in various LAB hosts opens the door to many
applications.
We determined that the food-fermenting and commensal
lactobacilli L. sakei, L. plantarum, and L. casei secreted and anchored Nuc as efficiently as L. lactis. Exported Nuc was estimated to be present at about 4 mg/liter of culture in all LAB strains tested; based on an average of
40% of Nuc anchored to the cell wall of those LAB per liter of culture
at an OD600 of 1, the number of Nuc molecules
associated with the cell wall corresponds to about 104 per cell. This is in agreement with levels
reported with entire M6 in L. lactis and with the lipase
anchored to the cell wall of Staphylococcus carnosus using
the CWA domain of the fibronectin-binding protein of S. aureus (28, 43). The ability to target heterologous proteins to the cytoplasm, the cell wall, or the external medium is
interesting for many applications. For example, live vaccine development using LAB as the vehicle has been proposed (33, 52). In this field, the ability to present antigens in various cell compartments of LAB will allow the study of the preferred antigen
localization for mucosal immune response in the GIT (21, 50). Another application is the use of LAB as nutraceuticals and
probiotics to provide enzymes, vitamins, or cytokines
(42). In this field, the versatility of the system
described here can be used to define the most appropriate mode of
delivery in humans or animals.
 |
ACKNOWLEDGMENTS |
We are most grateful to several colleagues who provided us with
precious material and tools: Michel Fons for L. reuteri
strains and pLEM7 plasmid, Rufino Jimenez-Diaz for an L.
plantarum strain and for sharing the L.
plantarum transformation protocol before publication,
Bénédicte Michel for several E. coli
strains, James Miller for specific anti-NucA antibodies, Isabelle
Poquet for pVE8001, Raul Raya for the L. casei strain,
and Monique Zagorec for the L. sakei strain. We also
thank Vincent Juillard for his help in the assay of PepX and Patrick
Regent for the photography. We are grateful to our colleagues Philippe
Langella, Yves Le Loir, and Isabelle Poquet for valuable discussions
concerning this work.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Unité de
Recherches Laitières et Génétique Appliquée,
INRA, 78352 Jouy-en-Josas Cedex, France. Phone: 33-1-34 65 20 67. Fax:
33-1-34 65 20 65. E-mail: piard{at}jouy.inra.fr.
 |
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Journal of Bacteriology, July 2001, p. 4157-4166, Vol. 183, No. 14
0021-9193/01/$04.00+0 DOI: 10.1128/JB.183.14.4157-4166.2001
Copyright © 2001, American Society for Microbiology. All rights reserved.
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