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Journal of Bacteriology, January 2001, p. 791-794, Vol. 183, No. 2
Thermophile Research Unit, Department of
Biological Sciences, The University of Waikato, Hamilton, New
Zealand
Received 5 June 2000/Accepted 25 October 2000
A pyrophosphate-dependent phosphofructokinase (PPi-PFK)
and an ATP-dependent phosphofructokinase (ATP-PFK) from
Thermotoga maritima have been cloned and characterized.
The PPi-PFK is unique in that the
Km and Vmax
values indicate that polyphosphate is the preferred substrate over
pyrophosphate; the enzyme in reality is a polyphosphate-dependent PFK.
The ATP-PFK was not significantly affected by common allosteric
effectors (e.g., phosphoenolpyruvate) but was strongly inhibited by
PPi and polyphosphate. The results suggest that the control
of the Embden-Meyerhof pathway in this organism is likely to be
modulated by pyrophosphate and/or polyphosphate.
The Embden-Meyerhof (EM), or
glycolytic, pathway is nearly ubiquitous in all life forms, and enzymes
of the reaction sequence are highly conserved. One of the key and
definitive enzymes of the pathway is phosphofructokinase (PFK). In the
majority of organisms, ATP is the phosphoryl donor for the enzyme and
the reaction is a nonreversible step in the pathway. Due to its
position, PFK is usually allosterically regulated by intracellular
metabolites, e.g., phosphoenolpyruvate (PEP), GDP, and/or ADP
(27). PFK subtypes utilizing pyrophosphate
(PPi) as the phosphoryl donor, where the reaction
becomes more reversible and the enzyme is generally not subject to
allosteric control mechanisms, have also been described (16, 18,
25).
Thermotoga maritima is a non-spore-forming, rod-shaped
hyperthermophilic bacterium with an optimum growth temperature of
80°C and is phylogenetically classified in the order
Thermotogales. The phylogeny of the small-subunit rRNA shows
that this organism represents one of the deepest and most slowly
evolving lineages of bacteria (12). T. maritima
ferments various carbohydrates, including monosaccharides and
polysaccharides, primarily via the EM pathway, and ATP-dependent PFK
(ATP-PFK) activity in cell extracts has been reported (23,
24). The genome sequence of this organism indicated the presence
of another PFK gene, and sequence comparison showed homology to
PPi-dependent PFK (PPi-PFK)
enzymes (17). If both genes code for functional enzymes,
then Thermotoga would represent the unusual situation of an
organism possessing two distinct PFK activities. Because of its
phylogenetic position, the occurrence and origin of these genes are of
importance with respect to the origins of the EM pathway. This paper
describes the cloning, expression, and characterization of these
enzymes, both of which exhibit unusual features.
T. maritima strain 3109 was obtained from the Deutsche
Sammlung von Mikroorganismen und Zellkulturen GmbH and grown in the medium described by Huber et al. (12). Escherichia
coli DH5 Construction of the PPi-PFK and ATP-PFK expression
clones.
The open reading frames representing the full-length
sequences of the PPi- and ATP-PFK genes were
amplified directly from genomic DNA from T. maritima. Primer
design was based on the nucleotide sequences of the 5'and 3' ends of
the putative PFK genes (17). For the
PPi-PFK gene, the forward primer, corresponding
to the N terminus, contained an upstream SfoI site (in bold)
and 5'-end spacer (5'-GGAA GGC GCC ATG GCT GAA AGA TTG
GGG ATA CTC G-3'), and the reverse primer, corresponding to the C
terminus, contained a flanking HindIII site (in bold)
and a 5'-end spacer (5'-GCTA AAG CTT TAT GGA AGC TCT
GTC GTA TGC CAG-3'). The primers for the ATP-PFK gene also
contained SfoI and HindIII sites, and their
sequences were 5'-GGCT GGC GCC ATG AAG AAG ATA GCA GTA
TAC-3' and 5'-CCA TAA GCT TTA TGA AAG CAT ATG TGC TAT TTC-3' for forward and reverse primers, respectively.
AmpliTaq Gold DNA polymerase was used for PCR (Perkin
Elmer). Both PCR products for the two genes (pfp and
pfk) were of the sizes predicted from their nucleotide
sequences, approximately 1,200 and 950 bp, respectively
(17). These products were sequenced to confirm their
identity (1) and then cloned into the expression vector after restriction digestion with SfoI and
HindIII, followed by ligation with T4 DNA ligase using
standard protocols (21). The ligation mixture containing
restriction enzyme-digested plasmid and PCR product was used to
transform E. coli strain DH5 Expression, purification, and characterization of the recombinant
PPi- and ATP-PFKs.
Flask cultures of the recombinant
E. coli clones were grown at 30°C in 700 ml of
Luria-Bertani broth plus 100 µg of ampicillin ml
0021-9193/01/$04.00+0 DOI: 10.1128/JB.183.2.791-794.2001
Copyright © 2001, American Society for Microbiology. All rights reserved.
Thermotoga maritima
Phosphofructokinases: Expression and Characterization of Two
Unique Enzymes
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ABSTRACT
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and expression plasmid pPROEX HTb were
obtained from Life Technologies. E. coli was grown at 30°C
with vigorous aeration (200 rpm) in Luria-Bertani broth supplemented
with ampicillin (100 µg ml
1) when
appropriate. The PFK assay was conducted essentially as described by
Ding et al. (6). Preparation of genomic DNA and the
alkaline lysis and cesium chloride gradient methods for large scale
plasmid DNA purification followed standard procedures
(21).
by electroporation, according to the manufacturer's instructions (Gene Pulser; Bio-Rad). Screening of the clones for those with inserts was carried out through
alkaline lysis miniprep plasmid isolation (21) followed by
restriction enzyme analysis.
1 and were induced with 1 mM
isopropyl-
-D-thiogalactoside when the culture
optical density at 600 nm reached approximately 0.6. After 5 h of
induction, the cells were harvested by centrifugation and sonicated,
and the cell lysate was incubated for 40 min at 80°C. Further
purification of the enzymes from the supernatant was performed using a
3.0-ml column of nickel nitrilotriacetic acid resin and elution
following the manufacturer's instructions (Life Technologies). Single
bands were obtained for each of the nickel nitrilotriacetic acid
resin-purified proteins on denaturing sodium dodecyl
sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) gels, indicating
a high degree of purity. The estimated molecular weights for the
PPi- and ATP-PFK proteins from SDS-PAGE were
approximately 48,000 and 38,000, respectively (Table
1), which is in close agreement with the
molecular masses derived from the amino acid sequences (including the
N-terminal histidine tag, which is approximately 2 kDa). The conceptual
translation masses of the full-length open reading frames of the
pfp and pfk genes are 46,403 Da and 34,447 Da for
the PPi- and ATP-PFKs, respectively. The
recombinant PPi-PFK had a molecular mass of 96 kDa as determined by its elution during gel filtration chromatography,
which suggests that the active molecule exists as a homodimer. In
contrast, the molecular mass of the ATP-PFK was 200 kDa, and thus a
homotetramer is the most probable quaternary structure.
TABLE 1.
Properties of the cloned T. maritima
PPi- and
ATP-PFKs
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Role of poly-P. Both Thermotoga enzymes have unique properties related to poly-P: it is a preferred substrate for the PPi-PFK and an allosteric regulator for the ATP-PFK. Poly-P is a component of volcanic condensates and deep-oceanic hydrothermal vents, and it is ubiquitously distributed in all living organisms (13) and possibly played a role in the prebiotic evolution of metabolism (3, 29). Significantly, poly-P has been used as an alternate phosphoryl and/or energy source to ATP for other enzymes involved with glucose metabolism. For example, poly-P-dependent glucokinase activity has been observed in Mycobacterium tuberculosis (11) and Propionibacterium freudenreichii (26, 28), and a poly-P-fructokinase has been found in Mycobacterium phlei (28). The poly-P-glucokinase from P. freudenreichii was particularly responsive to phosphoester chain length, with the apparent Km declining from 4.3 µM to 0.2 nM for polymer lengths of 30 and 724 residues, respectively (28). The PPi-PFK from Thermotoga demonstrated a similar, though less pronounced, effect, with a decline in Km values from 67 to 3.8 µM as phosphoester chain length increased from 2 to 18. In contrast, the PPi-PFKs from D. thermophilum and Spirochaeta thermophila favor the pyrophosphate substrate (7, 20).
The results presented here indicate that the control of the EM pathway in Thermotoga may be mediated by a quite different mechanism than that conventionally found, where the activity of ATP-PFK is allosterically controlled by either PEP, ADP, AMP, F-2,6-P2, citrate, succinate, or a combination of these. For glycolysis to proceed utilizing the ATP-PFK, the PPi and poly-P concentrations would have to remain low (<100 µM). If poly-P accumulated and/or the pH fell, then the ATP-PFK would be inhibited and the PPi-PFK activity would predominate. Poly-P is regarded as ubiquitous in all tested organisms (13, 14) and is present at concentrations above that needed to inhibit the ATP-PFK. Interestingly, no gene encoding a poly-P kinase has been identified in the genome of Thermotoga, though in other organisms other enzymes have also been implicated in the synthesis of poly-P, e.g., adenylate kinase in Acinetobacter johnsonii (19) and an acetate kinase in E. coli (10). Possibly, the PPi-PFK could produce poly-P by means of the reverse reaction at intracellular pH values between 6.0 and 7.0. The presence of ATP-PFK activity in cell extracts of Thermotoga has been reported (23, 24). We found both PPi-PFK and ATP-PFK activities in cell extracts if the assay pH was adjusted to the optimum for each enzyme (results not shown), so the enzymes appear to be expressed simultaneously. The intracellular concentration of PPi and poly-P and the internal pH of Thermotoga are unknown, but it will be important to determine these if the control of glycolysis in Thermotoga is to be understood. In summary, Thermotoga appears to be unique in that it contains the genes for two distinct PFKs and both genes can express functional enzymes. Both enzymes have unique properties, in particular, their responses to PPi and poly-P, and it is likely that these metabolites may play a central role in the control of glucose metabolism in this organism.| |
ACKNOWLEDGMENTS |
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We thank the Royal Society Marsden Science Foundation and the University of Waikato for its financial support during the course of this study.
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FOOTNOTES |
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* Corresponding author. Mailing address: Thermophile Research Unit, The University of Waikato, Private Bag 3105, Hamilton, New Zealand. Phone: 64-7-8388266. Fax: 64-7-8384324. E-mail: h.morgan{at}waikato.ac.nz.
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