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Journal of Bacteriology, November 2001, p. 6302-6304, Vol. 183, No. 21
0021-9193/01/$04.00+0 DOI: 10.1128/JB.183.21.6302-6304.2001
Copyright © 2001, American Society for Microbiology. All rights reserved.
Chemical Structure of a Novel Aminophospholipid
from Hydrogenobacter thermophilus Strain TK-6
Jun-ichiro
Yoshino,1
Yasumasa
Sugiyama,2
Shohei
Sakuda,2
Tohru
Kodama,3
Hiromichi
Nagasawa,2
Masaharu
Ishii,1 and
Yasuo
Igarashi1,*
Department of
Biotechnology1 and Department of Applied
Biological Chemistry,2 Graduate School of
Agriculture and Life Sciences, University of Tokyo, Bunkyo-ku,
Tokyo 113-8657, and Faculty of Textile Science and
Technology, Shinshu University, Ueda-shi, Nagano
386-0018,3 Japan
Received 9 February 2001/Accepted 9 August 2001
 |
ABSTRACT |
The phospholipid composition of Hydrogenobacter
thermophilus strain TK-6, an obligately chemolithoautotrophic,
extremely thermophilic hydrogen bacterium, was analyzed. Two of four
phospholipids detected from the strain were assumed to be
phosphatidylinositol and phosphatidylglycerol. An aminophospholipid
named PX, whose content among the phospholipids was 65%, was found to
have a novel chemical structure by analysis of the dilyso form with
nuclear magnetic resonance and fast atom bombardment-mass spectrometry
(FAB-MS) and by analysis of the intact PX with FAB-MS as
1,2-diacyl-3-O-(phospho-2'-O-(1'-amino)-2',3',4',5'-pentanetetrol)-sn-glycerol. Structurally similar phospholipids have been identified in
Methanospirillum hungatei, Methanolacinia
paynteri, and Methanogenium cariaci, which all
belong to the Archaea.
 |
INTRODUCTION |
Hydrogenobacter
thermophilus strain TK-6 is an obligately chemolithoautotrophic,
extremely thermophilic hydrogen bacterium whose optimal growth
temperature is around 70 to 75°C (7). Phylogenetic
analysis based on the 16S ribosomal DNA sequence showed that the strain
has the deepest branching point among the Bacteria
(9). In accordance with this, distinctive characteristics, such as unusual composition of cellular fatty acids
(C18:0 and C20:1 as major
fatty acids) and a novel sulfur-containing quinone called
methionaquinone, have been reported so far (5-7). In this paper, we report the phospholipid composition of TK-6 and also the
chemical structure of a new aminophospholipid from this strain.
 |
MATERIALS AND METHODS |
Strain used in this study.
H. thermophilus strain
TK-6 (DSM 6534, IAM 12695) was used in this study (7). The
strain was cultivated under chemolithoautotrophic conditions with
H2 gas as an energy source and
O2 gas as an electron acceptor, as described
elsewhere (7).
Phospholipid analysis.
Lipids were extracted from
lyophilized cells by the Bligh-Dyer method (1). A silica
gel 60 F254 thin-layer chromatography (TLC) plate (20 by 20 cm, 0.25 mm
thick; Merck) was used for the analysis of phospholipids. Development
was performed with the solvent chloroform-methanol-water (65:25:4).
Detection was performed with either the Dittmer reagent for
phospholipids (2) or the ninhydrin reagent for amino
groups. In a separate experiment, the extracted lipids were applied in
a line onto the TLC plate. After development, both edges of the plate
were cut to give two strips with a width of 1 cm and the strips
were sprayed with Dittmer reagent. Then, the regions corresponding to
the phospholipids PW, PX, PY, and PZ (see "Phospholipid
composition" below) were scraped and extracted with solvent
(chloroform-methanol, 2:1). After evaporation, weight was measured and
used for quantitation.
Purification of PX.
Total lipids were extracted with the
solvent (chloroform-methanol, 2:1) from the wet cells (261 g). After
the extract was dried, almost all the quinone (methionaquinone) was
removed by acetone extraction. Then, PX was purified by following the
procedure described above except that preparative TLC plates
(silica gel 60 F254 TLC plate [20 by 20 cm, 2 mm thick, Merck]) were used.
Mild alkaline hydrolysis of PX.
Purified PX (330 mg) was
dissolved in a solvent consisting of 4.0 ml of
CHCl3, 37.5 ml of
C2H5OH, 3.25 ml of pure
water, and 1.25 ml of 1 M NaOH, and the solution was incubated for 30 min at 37°C. Two milliliters of ethyl formate was poured into the reaction mixture to stop the reaction, and the total solution was
evaporated. Then, 5 ml of water, 3.35 ml of 2-butanol, and 6.65 ml of
CHCl3 were added, followed by extraction and
centrifugation for 30 min at 185 × g. The upper layer,
which contained the PX dilyso form, was evaporated, lyophilized, and
dissolved in 2 ml of pure water.
Purification of the PX dilyso form.
The above-described
solution containing the PX dilyso form was injected in 20-µl aliquots
into a high-pressure liquid chromatography system (D-6500; Hitachi).
High-pressure liquid chromatography was carried out under the following
conditions: column, Shim-pack CLC-SIL(M), 4.6 mm (diameter) by 25 cm
(Shimadzu); column temperature, 45°C; solvent,
hexane-2-propanol-water (38:51:10); and flow rate, 1 ml/min.
Fractionation was performed every minute, and each small portion was
applied to TLC analysis to detect the PX dilyso form by the ninhydrin
reaction. The 32- to 47-min fractions were collected, evaporated, and
lyophilized. The lyophilized compound (4.7 mg) was used for the
structural analysis described below.
Analysis of the PX dilyso form and PX.
Structural analyses
of the PX dilyso form were performed by nuclear magnetic resonance
(NMR) and high-resolution fast atom bombardment-mass
spectrometry (HR-FAB-MS). Also, structural analysis of PX was done by
FAB-MS. NMR spectra were collected on a JEOL JMN-A500 spectrometer with
D2O as the solvent and acetone as an external
standard. The measurements of 1H and
13C were performed at 500 and 125 MHz,
respectively. The chemical shifts (
) are reported in parts per
million, and the coupling constants (J values) are in hertz.
NMR experiments included
1H-1H COSY (correlation
spectroscopy), HMQC (heteronuclear multiple quantum coherence), and
HMBC (heteronuclear multiple-bond correlation spectroscopy).
FAB-MS (positive or negative mode) and HR-FAB-MS (positive mode) was
carried out on a JEOL JMS-SX102 spectrometer using a glycerol matrix.
 |
RESULTS |
Phospholipid composition.
Extracted lipids were developed on a
silica gel TLC, followed by color development with the Dittmer reagent.
Four phospholipids, named PX, PY, PW, and PZ, were detected (Fig.
1). PX also gave a red-purple color with
the ninhydrin reagent, showing that it is an aminophospholipid. PY and
PZ were thought to be phosphatidylglycerol and phosphatidylinositol,
respectively. Since the major phospholipid (PX), which comprised about
40% of lipids extracted by the Bligh-Dyer method, and the minor
phospholipid (PW) could not be identified, structural analysis
of PX was performed. However, due to low yield, further structural
analysis of PW was not possible.

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FIG. 1.
TLC analysis of phospholipids from H.
thermophilus strain TK-6. The percentages show weight
distribution among four phospholipids detected in the strain.
Abbreviations: PS, phosphatidylserine; PC, phosphatidylcholine; PG,
phosphatidylglycerol; PI, phosphatidylinositol; PE,
phosphatidylethanolamine.
|
|
Purification and structural analysis of PX.
Lipids were
extracted from wet cells (261 g), and PX (330 mg) was purified by
preparative silica gel TLC. Mild alkaline hydrolysis of PX gave
undecomposed PX, the PX monolyso form, and the PX dilyso form. Further
hydrolysis of the isolated PX monolyso form yielded the PX dilyso form.
These facts together with the fact that PX was digested with
phospholipase A2 (data not shown) showed that PX
is an acyl-type phospholipid with two acyl chains within a molecule.
The molecular formula of the dilyso form (referred to here as
structure 1) (Fig.
2) was determined to
be
C
8H
20O
9NP
by its
HR-FAB-MS spectrum. By analysis of
1H-NMR
(Fig.
3a),
13C-NMR (Fig.
3b),
1H-
1H COSY, HMQC, and HMBC
spectra of structure 1, two partial structures,
1CH
2(O---)CH(O---) CH
2(O---) and 1'CH
2(N---)CH(O---)CH(O---)CH(O---) CH
2(O---),
which contained all the carbon atoms in structure 1, were identified.
In the
13C NMR spectrum of structure 1, the
signals of C2, C3, C1', and
C3' were split into doublets by the
carbon-phosphorus couplings
with
2JC,P or
3JC,P values of
7.4, 5.6, 3.7, and 3.7 Hz, respectively. This observation
and the
number of phosphorus atoms in structure 1 showed that
both C3 and C2'
were phosphorylated to combine the two partial
structures. Finally,
based on the molecular formula, the dilyso
form was determined to
correspond to structure 1. Taking into
account that PX has two
acyl chains within a molecule, the overall
structure of PX was assumed
to be structure 2 (Fig.
2). Structure
2 was confirmed by analyzing PX
through FAB-MS. The positive mode
(FAB
+), which
gives ion peaks of (M + Na)
+ species, gave
several ion peaks: 858, 872, 886, 900, 912, and
926 (
m/z).
The negative mode (FAB

), which gives ion peaks
of (M

H)

species, gave the following
ion peaks: 834, 848, 862, 876, 888,
and 902 (
m/z). These ion
peaks are thought to derive from the
PX molecule with the following
respective pairs of fatty acids:
C
16:0 and
C
20:1, C
16:0 and
C
21:0, C
18:0 and
C
20:1, C
18:0 and
C
21:0, C
20:1 and
C
20:1, and C
20:1 and
C
21:0. Thus,
PX is a novel aminophospholipid
that had never been reported.
The assignment of spectra of structure 1 was as follows: HR-FAB-MS
(positive, glycerol matrix)
m/z
306.0954 (M + H)
+ (calculated for
C
8H
21O
9NP,
306.0954);

H (D
2O, 500 MHz) 4.58
(m, H-2'),
4.00 (dd,
J = 6.5, 12.5 Hz, H-3a), 3.99 (dd,
J = 3.5,
8.0 Hz, H-3'), 3.92 (qui,
J = 6.0 Hz, H-2), 3.92 (q,
J = 6.0 Hz,
H-3b), 3.82 (dd,
J = 6.0, 12.5 Hz, H-5'a), 3.70 (q,
J = 6.5 Hz,
H-1a), 3.68 (ddd,
J = 3.5, 6.5, 6.5 Hz, H-4'),
3.62 (dd,
J = 6.5,
13.5 Hz, H-5'b), 3.60 (dd,
J = 6.5, 15.5 Hz, H-1b), 3.31 (dd,
J = 3.5, 13.5 Hz, H-1'a), and 3.28 (dd,
J = 6.5, 13.5 Hz,
H-1'b);

C (D
2O, 125 MHz) 73.1 (broad, C-2'),
71.7 (d,
J = 3.7 Hz, C-3'),
70.9 (C-4'), 70.2 (d,
J = 7.4 Hz, C-2), 66.1 (d,
J = 5.6 Hz,
C-3),
62.3 (C-5'), 61.6 (C-1), and 39.4 (d,
J = 3.7 Hz,
C-1').

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FIG. 2.
Chemical structures of PX and the PX dilyso form. In the
PX dilyso form (structure 1), R1 and R2 are H; in PX (structure 2), R1
and R2 are acyl chains, not alkyl chains.
|
|
 |
DISCUSSION |
In this paper, we report the phospholipid composition of
H. thermophilus strain TK-6, with special emphasis on
the chemical structure of a new aminophospholipid. Although the
stereochemistry of glycerol moiety of PX is not known, structurally
similar phospholipids have been reported for the archaeon
Methanospirillum hungatei (Fig.
4) (3, 11). The major
difference between the phospholipids of the two strains is that,
instead of being an ether-type phospholipid, like that in
M. hungatei, the phospholipid from H. thermophilus strain TK-6 is an acyl type. Among
Archaea, phospholipids with (methylated)
aminopentanetetrol have been detected only in M. hungatei,
Methanolacinia paynteri, and Methanogenium
cariaci, which all belong to the Methanomicrobiaceae
(8). In the phylogenetic tree based on 16S ribosomal DNA
sequences, the family Methanomicrobiaceae has a late
branching point among Archaea, while the family
Aquificaceae, where H. thermophilus strain TK-6
belongs, has the earliest branching point among the
Bacteria. Therefore, it will be quite interesting to
investigate if phospholipids with (methylated) aminopentanetetrol can
be found in other microorganisms, especially among Bacteria.

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FIG. 4.
Chemical structure of aminophospholipid from M.
hungatei. R represents a saturated, 20-carbon isoprenoid
chain in ether linkage to the glycerol backbone.
|
|
In H. thermophilus strain TK-6, the major cellular fatty
acids are reported to be C18:0 and
C20:1 (7). Among six assigned ion
peaks of FAB-MS of PX, all except one were shown to contain C18:0 and/or C20:1 as fatty
acids. This result clearly shows that C18:0 and
C20:1 are also major fatty acids in PX.
Among strains which belong to the family Aquificaceae, the
complex lipid analysis has been performed only for Aquifex
pyrophilus (4). In A. pyrophilus, an
aminophospholipid accounts for 57% of the lipid, while a glycolipid
and a phospholipid account for 9.8 and 32% of the lipid, respectively.
It is very interesting that PX accounts for 40% of the lipid in
H. thermophilus strain TK-6. It has also been reported that
in A. pyrophilus (4), the main core lipid
(66%) is an alkyl glycerol diether, which is quite different from the
case of H. thermophilus strain TK-6. We have not
detected any ether-type lipids in TK-6. Therefore, the
structure of aminophospholipid from A. pyrophilus
should be clarified in future studies.
It would also be interesting to know how the aminophospholipid,
especially the aminopentanetetrol part, is biosynthesized in
H. thermophilus strain TK-6, where a reductive tricarboxylic acid cycle is operative as the CO2 fixation
pathway (10, 12-14). However, very little is known about
gluconeogenesis in TK-6, and thus, future experiments should focus on
clarification of gluconeogenesis in this strain.
 |
ACKNOWLEDGMENTS |
We thank Hirobumi Imai, of the University of Tokyo, for technical assistance.
This work was supported in part by a grant-in-aid from the Ministry of
Education, Science, and Culture of Japan and in part by collaboration
in a Core University Program between Yamaguchi University and Kasetsart
University supported by the Scientific Cooperation Program agreed upon
by the Japan Society for Promotion of Science (JSPS) and the National
Research Council of Thailand (NRCT).
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Department of
Biotechnology, Graduate School of Agriculture and Life Sciences,
University of Tokyo, Bunkyo-ku, Tokyo 113-8657, Japan. Phone:
81-3-5841-5142. Fax: 81-3-5841-5272. E-mail:
aigara{at}mail.ecc.u-tokyo.ac.jp.
 |
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Journal of Bacteriology, November 2001, p. 6302-6304, Vol. 183, No. 21
0021-9193/01/$04.00+0 DOI: 10.1128/JB.183.21.6302-6304.2001
Copyright © 2001, American Society for Microbiology. All rights reserved.
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