Previous Article | Next Article ![]()
Journal of Bacteriology, March 2001, p. 1524-1530, Vol. 183, No. 5
Dunn Human Nutrition Unit, Medical Research
Council, Cambridge CB2 2XY, United Kingdom
Received 12 October 2000/Accepted 30 November 2000
The multicopy subunit c of the
H+-transporting F1Fo ATP synthase
of Escherichia coli folds across the membrane as a hairpin of two hydrophobic F1Fo ATP
synthases catalyze the formation of ATP by utilizing the energy of a
transmembrane electrochemical gradient (reviewed in reference
3). H+ and Na+ translocating
complexes exist. Closely related ATP synthases are found in the plasma
membrane of eubacteria, the inner membrane of mitochondria, and the
thylakoid membrane of chloroplasts. The enzyme is a multisubunit
complex with distinct extramembranous and transmembrane domains, termed
F1 and Fo, respectively. In Escherichia
coli, the F1 sector is composed of five subunits in an
The E. coli Fo consists of three types of
subunits with a stoichiometry of
a1b2c10-12
(12, 18). The c subunits of Fo are
arranged in an oligomeric ring (7, 19). Subunit
c folds in the membrane as a hairpin of two hydrophobic In the model of the oligomeric c ring, the Asp61
side chain is positioned within a four-helix bundle formed by the front
and back faces of two adjacent monomers (see Fig. 5A) (7,
19). The ion binding pocket in the subunit c ring is
predicted to be lined by side chains at positions equivalent to 24, 28, and 62, which surround the essential carboxyl at position 61, in
E. coli. Interestingly, numerous sequences of subunit
c from a wide variety of sources possess polar residues at
all or some of these positions.
A second carboxyl side chain at a position equivalent to
Ile28 is found in several bacteria (Fig.
1). Several of these bacteria, e.g.,
Mycobacterium tuberculosis, Mycobacterium leprae, and
Streptococcus pneumoniae, are the cause of serious
infectious disease. In addition, studies of S. pneumoniae
indicate that some antimalarials target the ion binding site in subunit
c and that this or the related vacuolar protein is a likely
target in the etiological agent Plasmodium falciparum
(9). In some streptococci and other lactic acid bacteria,
the primary function of the enzyme is as an H+-pumping
ATPase for cytoplasmic pH regulation, maintaining a transmembrane pH
gradient with a cytoplasmic pH near neutrality when the extracellular pH is low (2, 6, 24; reviewed in references 23 and
30). In Streptococcus mutans, the activity of the
F1Fo ATPase appears to be regulated by
intracellular pH (6).
0021-9193/01/$04.00+0 DOI: 10.1128/JB.183.5.1524-1530.2001
Copyright © 2001, American Society for Microbiology. All rights reserved.
Introduction of a Carboxyl Group in the First
Transmembrane Helix of Escherichia coli
F1Fo ATPase Subunit c and
Cytoplasmic pH Regulation
![]()
ABSTRACT
Top
Abstract
Introduction
Materials and Methods
Results
Discussion
References
helices. The subunits interact in a
front-to-back fashion, forming an oligomeric ring with helix 1 packing
in the interior and helix 2 at the periphery. A conserved carboxyl,
Asp61 in E. coli, centered in the second
transmembrane helix is essential for H+ transport. A second
carboxylic acid in the first transmembrane helix is found at a position
equivalent to Ile28 in several bacteria, some the cause of
serious infectious disease. This side chain has been predicted to pack
proximal to the essential carboxyl in helix 2. It appears that in some
of these bacteria the primary function of the enzyme is H+
pumping for cytoplasmic pH regulation. In this study, Ile28
was changed to Asp and Glu. Both mutants were functional. However, unlike the wild type, the mutants showed pH-dependent ATPase-coupled H+ pumping and passive H+ transport through
Fo. The results indicate that the presence of a second
carboxylate enables regulation of enzyme function in response to
cytoplasmic pH and that the ion binding pocket is aqueous accessible.
The presence of a single carboxyl at position 28, in mutants I28D/D61G
and I28E/D61G, did not support growth on a succinate carbon source.
However, I28E/D61G was functional in ATPase-coupled H+
transport. This result indicates that the side chain at position 28 is
part of the ion binding pocket.
![]()
INTRODUCTION
Top
Abstract
Introduction
Materials and Methods
Results
Discussion
References
3
3

stoichiometry. Homologous
subunits are found in mitochondria and chloroplasts. A high-resolution
structure of the
3
3
portion of bovine
F1 shows the three
and three
subunits to alternate around the central
subunit (1). Ion movement through
Fo is coupled to ATP synthesis and hydrolysis at sites in
F1.
helices connected by a polar loop on the F1 binding side of
the membrane (14). The arrangement and interaction of
subunits in E. coli is supported by a 4-Å resolution X-ray
diffraction density map of an F1-c10
subcomplex purified from yeast mitochondria (40). A
conserved and essential Asp or Glu (Asp61 in E. coli) is centered in the second transmembrane helix of subunit
c. The conserved carboxylate catalyzes ion movement via interaction with subunit a, a key residue being an arginine
(Arg210 in E. coli) in a transmembrane segment.
Such data have supported mechanistic models where ion movement occurs
at the interface between subunits a and c through
rotation of the subunit c oligomeric ring and subunits
and
within F1 (reviewed in references 3, 10, and
41).

View larger version (23K):
[in a new window]
FIG. 1.
Some of the c subunits that have a carboxylic
acid at a position equivalent to Ile28 in E. coli. Sequence comparison around residues equivalent to
Ile28 and Asp61 in E. coli is shown.
The sequences compared were from E. coli (42),
Lactococcus lactis (25), M. tuberculosis (4), M. leprae
(39), S. pneumoniae R6 (9),
S. mutans (38), and Propionigenium
modestum (8). P. modestum is included to
show the polar residues at positions equivalent to 28, 61, and 62 that
are essential for Na+ binding (21). Positions
equivalent to 28 in helix 1 and position 61 in helix 2 of E. coli are in boldface.
In this study, replacement of Ile28 of the E. coli F1Fo ATP synthase subunit c with Asp and Glu was investigated. Both changes produced a pH-dependent function. The result suggests that the second carboxyl in some bacteria could be important for regulation of enzyme function in response to cytoplasmic pH. The presence of a single carboxyl in subunit c at position 28, in constructs I28D/D61G and I28E/D61G, did not allow growth on succinate as a carbon source. However, I28E/D61G was functional in ATPase-coupled H+ transport.
| |
MATERIALS AND METHODS |
|---|
|
|
|---|
Strains and plasmids.
The plasmids used in this study are
derivatives of plasmid pDF163, which contains the wild-type (WT)
uncBEFH genes (bases 870 to 3216, encoding subunits a,
c, b, and
) cloned between the HindIII and
SphI sites of plasmid pBR322 (13). Plasmids pI28D and pI28E were constructed by a rapid site-directed mutagenesis procedure (26). An antisense oligonucleotide,
5'-ACCCCCGAGGATGCCT/ATCACCGATCGCAGCACC-3', corresponding to subunit c positions G23 to G33, was
synthesized to incorporate base changes (boldface) to create an Asp or
Glu codon at position 28 and to overlap the nearby AvaI
restriction enzyme site (italics). PCR was then performed with this
primer and a sense oligonucleotide primer designed to the coding strand (bases 1540 to 1560), upstream of the PstI restriction
enzyme site (1561 to 1566), using plasmid pDF163 DNA as the template. The PCR product was then digested with restriction enzymes
PstI and AvaI and ligated to the equivalent sites
of plasmid pDF163 to generate plasmid pI28D or pI28E. The I28D/D61G and
I28E/D61G double substitutions were generated by subcloning a
PstI/AvaI fragment from either plasmid pI28D or
plasmid pI28E into the corresponding sites of plasmid pLH247
(32), a plasmid pDF163 derivative containing the subunit
c D61G substitution. All constructs were confirmed by
restriction mapping and sequencing. The chromosomal uncBEFH deletion strain, JWP109 (pyrE41 entA403 argH1 rspsL109 supE44
uncBEFH) (17), was transformed with the plasmids.
Complementation of the unc phenotype (lack of growth on
succinate) was tested by transferring transformant,
ampicillin-resistant colonies to minimal medium 63 plates containing 22 mM succinate, 2 mg of thiamine/liter, 0.2 mM uracil, 0.2 mM
L-arginine, 20 µM dihydroxybenzoic acid, and 100 mg of
ampicillin/liter (31).
Membrane preparations and biochemical assays. Inside-out membrane vesicles, F1 head group on the outer face, were prepared and stored in TMDG buffer (50 mM Tris-HCl [pH 7.5], 5 mM MgCl2, 1 mM dithiothreitol, 10% [vol/vol] glycerol) at 20 mg/ml after passage of cells through a French press (43). F1-lacking stripped membranes were prepared by centrifugation and incubation of whole membranes at 5 mg/ml in TEDG buffer (1 mM Tris-HCl [pH 8], 0.5 mM Na2EDTA, 1 mM dithiothreitol, 10% [vol/vol] glycerol) for 30 min at 30°C, followed by centrifugation and one wash with TEDG buffer. Protein concentration was determined by using a Pierce bicinchoninic acid assay kit with the addition of 0.01% sodium dodecyl sulfate. ATPase activity was assayed in HMK buffer (10 mM HEPES-KOH [pH as indicated], 5 mM MgCl2, 300 mM KCl) using 25 µg (total protein) of membranes and 5 mM ATP by measuring inorganic phosphate release (28). ATP-driven 9-amino-6-chloro-2-methoxyacridine (ACMA) quenching and NADH-driven quinacrine quenching assays were carried out in HMK assay buffer as described previously (43). Membranes were incubated in HMK assay buffer for 15 min in the presence of 45 µM N,N'-dicyclo hexylcarbodiimide (DCCD) prior to addition of NADH to test its effect on NADH-driven quenching. The rate of NADH oxidation was determined by absorbance change at a wavelength of 340 nm, using 100 µM NADH and 50 µg of whole membranes/ml in HMK buffer (pH 7.0). ATP synthesis was carried out as described by Schulenberg and Capaldi (37), with the pH of the Tris buffer and reaction buffer varied accordingly. All reactions were carried out at room temperature. The values reported are averages of triplicate assays, and quenching curves are representative of several independent experiments.
| |
RESULTS |
|---|
|
|
|---|
Effect of I28X substitutions on function.
Asp and Glu were
introduced at position 28 in subunit c and into a D61G
mutant. The modified c subunits were expressed from a
plasmid carrying the uncBEFH genes, encoding subunits
a, c, b, and
of F1Fo
respectively, and transformed into the
uncBEFH strain
JWP109. Growth of transformants was tested on succinate minimal medium,
where growth depends on a functional oxidative phosphorylation system.
The growth properties, ATPase activities, and rates of NADH oxidation
of isolated inside-out membranes are shown in Table
1. Both I28x mutants grew on
succinate. The I28E mutant grew similarly to the wild type, whereas the
I28D mutant grew less well. The I28D/D61G and I28E/D61G mutants did not
grow on succinate minimal medium. The levels of expression of subunit c as determined by immunoblot analysis from each mutant were
similar (data not shown).
|
1
mg
1, respectively, and at pH 8.0 were 39.1 and 39.4 nmol
min
1 mg
1, respectively. The ATP-driven ACMA
quenching response of the I28D and I28E/D61G mutants was greatly
reduced, the I28D mutant having a response approximately 20 to 30% of
that of the I28E mutant at an equivalent amount of membranes used. To
aid investigation, twice as much of these membranes as of the WT and
I28E mutant membranes was analyzed, thus obtaining an approximately
twofold increase in the response. The I28E/D61G mutant membranes showed a significant quenching response even though the activity was insufficient to support growth by oxidative phosphorylation. The cell
culture from which these membranes were derived was devoid of
succinate-positive revertants.
|
|
|
| |
DISCUSSION |
|---|
|
|
|---|
Effects and implications of a second carboxyl group.
In some
bacteria, a second carboxylic acid is found at a position equivalent to
Ile28 in E. coli (Fig. 1 and
5A). In this study, alteration of
Ile28 to Asp or Glu resulted in functional enzymes that
show pH-dependent function (Fig. 3 and 4). The I28E mutant grew
similarly to the wild type and had a greater ATP-driven H+
pumping response than the I28D mutant. The pH dependence of function is
similar to observations seen on an A24D mutant by Zhang and Fillingame
(43). As these authors suggest, the effect of pH on the
rate of H+ movement through Fo is likely to
limit ATPase-coupled H+ transport. The results here suggest
that the presence of the second carboxyl, at a position equivalent to
28 in E. coli, may be important for regulation of enzyme
function in response to cytoplasmic pH. The presence of a second
carboxyl reduces H+ pumping activity when the intracellular
pH is above neutrality. In S. mutans, which has this
additional carboxyl group, the F1Fo ATPase
appears to regulate intracellular pH but not above pH 7.5 (6). The effect of replacing the carboxylic acid at the
equivalent position in S. mutans and other bacteria requires
investigation.
|
2) from the residues that fall
on the half facing the periplasm, and it has been suggested that they
may make up part of an aqueous channel (10, 41). However,
in S. mutans, where the primary role appears to be
cytoplasmic H+ extrusion, the residues at equivalent
positions appear to have been replaced so that there is a net positive
charge (e.g., D119
G, insertion between 122/123
K, D124
Q,
L126
K, and P127
D). This region incorporates a repeat of residues
DLLP in E. coli, which is altered in S. mutans by the aforementioned changes, and has been linked with
functional importance (27). Intriguingly, the sequence
DAIP is found at the H+ binding site in E. coli
subunit c, and there also appears to be homology in the
flanking sequence. These changes may be rationalized if this region is
part of the periplasmic facing channel, where the primary role in
S. mutans is H+ release.
Switching the essential carboxyl group to helix 1. The I28E/D61G mutant, but not the I28D/D61G mutant, showed H+ pumping activity despite the inability of both to support growth by oxidative phosphorylation (Fig. 2). The function of the I28E/D61G mutant may relate to the greater side chain length placing the carboxyl group at a more optimal position toward the center of the pocket or a slight variation in the pKa of side chain carboxyl. The reduced H+ pumping activity appears to be pH sensitive in this mutant, which implies that the effects seen on the double-carboxyl mutants are a direct result of changes in the ionization of this side chain. The mutation causes a lack of growth on succinate and a large reduction in H+ pumping activity, and so the significance is difficult to assess.
The H+ pumping ability of the I28E/D61G mutant leads to the possibility that in the I28E and I28D mutants, both carboxyls undergo protonation and deprotonation during catalytic turnover. The switching of the essential carboxyl group to the inner helix, at position 24, with retention of function has been previously described (32). The ability of a single carboxyl group present on helix 1 to retain function seems to be at odds with mechanisms involving entire rotations of helix 2 (17, 35). Ion binding and release between subunits a and c may occur through only subtle local side chain and backbone movement.Two carboxyl groups in transmembrane helices of subunit c are found in several pathogenic bacteria and in the related vacuolar ATPase. A second carboxylic acid, at a position equivalent to Ile28 in E. coli, is found in several pathogenic bacteria (Fig. 1). Studies of S. pneumoniae indicate that the antimalarial agents quinine and optochin target subunit c (9, 34). Quinine- and optochin-resistant mutants were found to have single replacements at positions equivalent to 29, 32, 57, 58, and 59 in E. coli. No mutants with replacement of either of the carboxylic acids have been identified. In the models of the E. coli oligomeric subunit c ring, these positions all fall around Asp61 and Ile28, i.e., the ion binding pocket. Positions 57 and 58 are near positions 28 and 61 (Fig. 5A). As several other pathogenic bacterial species, such as M. tuberculosis, M. leprae, and pathogenic oral bacteria, possess these two carboxylic acids, it is tempting to speculate that the ion binding cavity of subunit c could be a valuable target for future therapeutic drugs.
Studies of S. pneumoniae have led to the suggestion that the primary target for quinine in P. falciparum could be the subunit c of either the mitochondrial F1F0 ATP synthase or the V1V0 ATPase (34). This is germane to the data presented here, as recent studies indicate that P. falciparum has a plasma membrane V1V0 ATPase that is responsible for regulation of cytoplasmic pH (36). The V-type ATPase has a homologous subunit c composed of four transmembrane helices that seem to have evolved by duplication of a progenitor gene (29). Each V-type subunit c has only a single essential carboxylate in one of the two helical hairpins, lowering the H+/ATP ratio to presumably enable ATP-driven H+ pumping to generate greater electrochemical gradients while preserving structural features of the complex (5). Two homologues, Vma11p and Vma16p, have been found and shown to be essential for activity in yeast (16). The Vma16p subunit c has two carboxylates in helices 3 and 5 that are equivalent to helix 2 in the F-type subunit c. The second carboxylate (E188) appears not to be essential for activity (16). It falls in the last helix at a position similar to that of Ile28 in the E. coli subunit c. The carboxylate may lie in the ion binding cavity proximal to the essential carboxylate; hence, protonation and deprotonation could play a role in pH sensitivity as described above (Fig. 5B). V1 and V0 reassembly has been shown to be pH dependent (22). Deprotonation of E188 at alkaline pH could prevent reassembly, possibly via long-range perturbations through the cytoplasmic loops. As the cytoplasmic pH falls, protonation of this carboxylate could then allow reassembly and activity. The carboxylates in Vma16p could also be positioned so as to generate neighboring ion binding sites that will form an F-type subunit c-like face if the subunits are arranged similarly to the F0 c ring (Fig. 5C) (19). In this arrangement, the potential for H+ movement is evident via a limited forward-and-backward idling motion at this face or inhibition via a variation in the pKa of the carboxylates (see above). The models can provide a mechanistic explanation for the "slip" mechanism (33), variable H+-ATP coupling modulation, by allowing an uncoupling between H+ movement and ATP hydrolysis.| |
ACKNOWLEDGMENTS |
|---|
I express a special thanks to John Walker for his support. Plasmids pDF163 and pLH247 and strain JWP109 were a kind gift from Robert Fillingame and group.
| |
FOOTNOTES |
|---|
* Mailing address: MRC Dunn Human Nutrition Unit, The Wellcome Trust/MRC Building, Hills Road, Cambridge CB2 2XY, United Kingdom. Phone: 44 (0) 1223 252826. Fax: 44 (0) 1223 252825. E-mail: pcj{at}mrc-dunn.cam.ac.uk.
| |
REFERENCES |
|---|
|
|
|---|
| 1. | Abrahams, J. P., A. G. W. Leslie, R. Lutter, and J. E. Walker. 1994. Structure at 2.8 Å resolution of F1-ATPase from bovine heart mitochondria. Nature 370:621-628[CrossRef][Medline]. |
| 2. | Amachi, S., K. Ishikawa, S. Toyoda, Y. Kagawa, A. Yokota, and F. Tomita. 1998. Characterization of a mutant of Lactococcus lactis with reduced membrane bound ATPase activity under acidic conditions. Biosci. Biotechnol. Biochem. 62:1574-1580[CrossRef][Medline]. |
| 3. |
Boyer, P. D.
1997.
The ATP synthase a splendid molecular machine.
Annu. Rev. Biochem.
66:717-749[CrossRef][Medline].
|
| 4. | Coles, S. T., R. Brosch, J. Parkhill, T. Garnier, C. Churcher, D. Harris, S. V. Gordon, K. Eiglmeier, S. Gas, C. E. Barry, F. Tekaia, K. Badcock, K. Basham, K. Brown, T. Chillingworth, R. Connor, R. Davies, K. Devlin, T. Feltwell, S. Gentles, N. Hamlin, S. Holroyd, T. Hornsby, K. Jagels, A. Krogh, J. Mclean, S. Moule, L. Murphy, K. Oliver, J. Osborne, M. A. Quail, M.-A. Rajandream, J. Rogers, S. Rutter, K. Seeger, J. Skelton, R. Squares, S. Squares, J. E. Sulston, K. Taylor, S. Whitehead, and B. G. Barrel. 1998. Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence. Nature 393:537-544[CrossRef][Medline]. |
| 5. | Cross, R. L., and L. Taiz. 1990. Gene duplication as a means for altering H+/ATP ratios during the evolution of FoF1 ATPases and synthases. FEBS Lett. 259:227-229[CrossRef][Medline]. |
| 6. |
Daspher, S. G., and E. C. Reynolds.
1992.
pH regulation by Streptococcus mutans.
J. Dent. Res.
71:1159-1165 |
| 7. |
Dmitriev, O. Y.,
P. C. Jones, and R. H. Fillingame.
1999.
Structure of the subunit c oligomer in the F1Fo ATP synthase: model derived from solution structure of the monomer and cross-linking in the native enzyme.
Proc. Natl. Acac. Sci. USA
96:7785-7790 |
| 8. |
Esser, U.,
L. R. Krumholz, and R. D. Simoni.
1990.
Nucleotide sequence of the Fo subunits of the sodium dependent F1Fo ATPase of Propionigenium modestum.
Nucleic Acids Res.
18:5887 |
| 9. | Fenoll, A., R. Munoz, E. Garcia, and A. G. de la Campa. 1994. Molecular basis of the optochin-sensitive phenotype of pneumococcus: characterization of the genes encoding the Fo complex of the Streptococcus pneumoniae and Streptococcus oralis H+-ATPases. Mol. Microbiol. 12:587-598[Medline]. |
| 10. | Fillingame, R. H., W. Jiang, O. Y. Dmitriev, and P. C. Jones. 2000. Structural interpretations of Fo rotary function in the Escherichia coli F1Fo ATP synthase. Biochim. Biophys. Acta 1458:387-403[Medline]. |
| 11. | Fillingame, R. H., P. C. Jones, W. Jiang, F. I. Valiyaveetil, and O. Y. Dmitriev. 1998. Subunit organization and structure in the Fo sector of Escherichia coli F1Fo ATP synthase. Biochim. Biophys. Acta 1365:135-142[Medline]. |
| 12. |
Foster, D. L., and R. H. Fillingame.
1982.
Stoichiometry of subunits in the H+-ATPase complex of Escherichia coli.
J. Biol. Chem.
257:2009-2015 |
| 13. |
Fraga, D., and R. H. Fillingame.
1989.
Conserved polar loop region of Escherichia coli subunit c of the F1Fo H+-ATPase. Glutamine 42 is not absolutely essential, but substitutions alter binding and coupling of F1 to Fo.
J. Biol. Chem.
264:6797-6803 |
| 14. | Girvin, M. E., V. K. Rastogi, F. Abildgaard, J. L. Markley, and R. H. Fillingame. 1998. Solution structure of the transmembrane H+-transporting subunit c of the F1Fo ATP synthase. Biochemistry 37:8817-8824[CrossRef][Medline]. |
| 15. |
Harrison, M. A.,
J. Murray,
B. Powell,
Y.-I. Kim,
M. E. Finbow, and J. B. C. Findlay.
1999.
Helical interactions and membrane disposition of the 16-kDa proteolipid subunit of the vacuolar H+-ATPase analyzed by cysteine replacement mutagenesis.
J. Biol. Chem.
274:25461-25470 |
| 16. |
Hirata, R.,
L. A. Graham,
A. Takatsuki,
T. H. Stevens, and Y. Anraku.
1997.
VMA11 and VMA16 encode second and third proteolipid subunits of the Saccharomyces cerevisiae vacuolar H+-ATPase.
J. Biol. Chem.
272:4795-4803 |
| 17. |
Jiang, W., and R. H. Fillingame.
1998.
Interacting helical faces of subunits a and c in the F1Fo ATP synthase of Escherichia coli defined by disulfide cross-linking.
Proc. Natl. Acad. Sci. USA
95:6607-6612 |
| 18. |
Jones, P. C., and R. H. Fillingame.
1998.
Genetic fusions of subunit c in the Fo sector of H+-transporting ATP synthase: functional dimers and trimers and determination of stoichiometry by cross-linking analysis.
J. Biol. Chem.
273:29701-29705 |
| 19. |
Jones, P. C.,
W. Jiang, and R. H. Fillingame.
1998.
Arrangement of the multicopy H+-translocating subunit c in the membrane sector of the Escherichia coli F1Fo ATP synthase.
J. Biol. Chem.
273:17178-17185 |
| 20. |
Jones, P. C.,
J. Hermolin,
W. Jiang, and R. H. Fillingame.
2000.
Insights into the rotary catalytic mechanism of FoF1 ATP synthase from cross-linking of subunits b and c in the Escherichia coli enzyme.
J. Biol. Chem.
275:31340-31346 |
| 21. | Kaim, G., F. Wehrle, U. Gerike, and P. Dimroth. 1997. Molecular basis for the coupling ion specificity of F1Fo ATP synthases: probing the liganding groups for Na+ and Li+ in the c subunit of the ATP synthase from Propionigenium modestum. Biochemistry 36:9185-9194[CrossRef][Medline]. |
| 22. | Kane, P. M., and K. J. Parra. 2000. Assembly and regulation of the yeast vacuolar H+-ATPase. J. Exp. Biol. 203:81-87[Abstract]. |
| 23. | Kobayashi, H. 1987. Regulation of cytoplasmic pH in streptococci, p. 255-269. In J. Reizer, and A. Peterkofsky (ed.), Sugar transport and metabolism in gram-positive bacteria. Ellis Horwood Ltd., Chichester, United Kingdom. |
| 24. |
Kobayashi, H.,
N. Murakami, and T. Unemoto.
1982.
Regulation of the cytoplasmic pH in Streptococcus faecalis.
J. Biol. Chem.
257:13246-13252 |
| 25. | Koebmann, B. J., D. Nilsson, O. P. Kuipers, and P. R. Jensen. 2000. The membrane-bound H+-ATPase complex is essential for growth of Lactococcus lactis. J. Bacteriol. 172:4738-4743. |
| 26. | Landt, O., H.-P. Gunert, and U. Hahn. 1990. A general method for rapid site-directed mutagenesis using the polymerase chain reaction. Gene 96:125-128[CrossRef][Medline]. |
| 27. |
Lewis, M. J., and R. D. Simoni.
1992.
Deletions in hydrophilic domains of subunit a from the Escherichia coli F1Fo-ATP synthase interfere with membrane insertion or Fo assembly.
J. Biol. Chem.
267:3482-3489 |
| 28. | Lindberg, O., and L. Ernster. 1956. Determination of organic phosphorous compounds by phosphate analysis. Methods Biochem. Anal. 3:1-19. |
| 29. |
Mandel, M.,
Y. Moriyama,
J. D. Hulmes,
Y.-C. E. Pan,
H. Nelson, and N. Nelson.
1988.
Cloning of the cDNA encoding the 16-kDa proteolipid of chromaffin granules implies gene duplication in the evolution of H+-ATPases.
Proc. Natl. Acad. Sci. USA
85:5521-5524 |
| 30. | Marquis, R. E. 1995. Oxygen metabolism, oxidative stress and acid base physiology of dental plaque biofilms. J. Ind. Micobiol. 15:198-207. |
| 31. | Miller, J. H. 1992. A short course in bacterial genetics. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y. |
| 32. |
Miller, M. J.,
M. Oldenburg, and R. H. Fillingame.
1990.
The essential carboxyl group in subunit c of the F1Fo ATP synthase can be moved and H+-translocation function retained.
Proc. Natl. Acad. Sci. USA
87:4900-4904 |
| 33. | Moriyama, Y., and N. Nelson. 1988. The vacuolar H+-ATPase, a proton pump controlled by a slip, p. 387-394. In W. D. Stein (ed.), The ion pumps, structure, function and regulation. Alan R. Liss Inc., New York, N.Y. |
| 34. |
Munoz, R.,
E. Garcia, and A. G. de la Campa.
1996.
Quinine specifically inhibits the proteolipid subunit of the FoF1 H+-ATPase of Streptococcus pneumoniae.
J. Bacteriol.
178:2455-2458 |
| 35. | Rastogi, V. K., and M. E. Girvin. 1999. Structural changes linked to proton translocation by subunit c of the ATP synthase. Nature 402:263-268[CrossRef][Medline]. |
| 36. |
Saliba, K. J., and K. Kirk.
1999.
pH regulation in the intracellular malaria parasite, Plasmodium falciparum.
J. Biol. Chem.
274:33213-33219 |
| 37. |
Schulenberg, B., and R. A. Capaldi.
1999.
The epsilon subunit of the F1Fo complex of Escherichia coli cross-linking studies show the same structure in situ as when isolated.
J. Biol. Chem.
274:28351-28355 |
| 38. | Smith, A. J., R. G. Quivey, and R. C. Faustoferri. 1996. Cloning and nucleotide sequence analysis of the Streptococcus mutans membrane-bound, proton-translocating ATPase operon. Gene 183:87-96[CrossRef][Medline]. |
| 39. |
Smith, D. R.,
P. Richterich,
M. Rubenfield,
P. W. Rice,
C. Butler,
H.-M. Lee,
S. Kirst,
K. Gundersen,
K. Abendschan,
Q. Xu,
M. Chung,
C. Deloughery,
T. Aldredge,
J. Maher,
R. Lundstrom,
C. Tulig,
K. Falls,
J. Imrich,
D. Torrey,
M. Engelstein,
G. Breton,
D. Madan,
R. Nietupski,
B. Seitz,
S. Connelly,
S. McDougall,
H. Safer,
R. Gibson,
L. Doucette-Stamm,
K. Eiglmeier,
S. Bergh,
S. T. Cole,
K. Robison,
L. Richterich,
J. Johnson,
G. M. Church, and J. Mao.
1997.
Multiplex sequencing of 1.5 Mb of the Mycobacterium leprae genome.
Genome Res.
7:802-819 |
| 40. |
Stock, D.,
A. G. W. Leslie, and J. E. Walker.
1999.
Molecular architecture of the rotary motor in ATP synthase.
Science
286:1700-1705 |
| 41. | Vik, S. B., J. C. Long, T. Wada, and D. Zhang. 2000. A model for the structure of subunit a of the Escherichia coli ATP synthase and its role in proton translocation. Biochim. Biophys. Acta 1458:457-466[Medline]. |
| 42. | 42. Walker, J. E., M. Saraste, and N. J. Gay. 1984. The unc operon. Nucleotide sequence, regulation and structure of ATP-synthase. Biochim. Biophys. Acta 768:164-200[Medline]. |
| 43. |
Zhang, Y., and R. H. Fillingame.
1994.
Essential aspartate in subunit c of F1Fo ATP synthase: effect of position 61 substitutions in helix-2 on function of Asp24 in helix-1.
J. Biol. Chem.
269:5473-5479 |
This article has been cited by other articles:
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Appl. Environ. Microbiol. | Infect. Immun. | Eukaryot. Cell |
|---|---|---|
| Mol. Cell. Biol. | J. Virol. | Microbiol. Mol. Biol. Rev. |
| ALL ASM JOURNALS |