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Journal of Bacteriology, May 2001, p. 2910-2917, Vol. 183, No. 9
INSERM U447, Institut Pasteur de Lille, 59019 Lille Cedex, France
Received 25 September 2000/Accepted 30 January 2001
A new gene from Bordetella bronchiseptica, bfrZ
encoding a putative siderophore receptor, was identified in a
Fur-repressor titration assay. A bfrZ null mutant was
constructed by allelic exchange. The protein profile of this mutant is
similar to that of the wild-type parent strain. The
BfrZ Iron is essential for the growth of
most microorganisms but is usually not readily accessible. In an oxic
environment at neutral pH, the concentration of free Fe3+
in solution is less than 10 Ferrisiderophore transport systems and their regulation have been well
characterized in Escherichia coli and several other gram-negative bacteria. The TonB-ExbB-ExbD envelope complex (Ton system) enables transfer of all iron-loaded siderophores to the periplasm, and then siderophore-specific ABC-type systems transport the
iron chelates across the inner membrane (9, 32). Genes encoding iron uptake systems are repressed by the Fur protein under
high-iron growth conditions (see reference 13 for a recent review). The Fur-Fe2+ complex binds to promoters
containing target sequences named Fur-binding sequences (FBS) and
thus blocks transcription. The FBS consensus sequence was recently
reexamined and is thought to result from combination of at least three
adjacent 6-bp NATA-TAT motifs (18) instead of a previously
proposed 19-bp palindromic AT-rich sequence (13). In the
absence of Fe2+, Fur does not bind to the FBS, and
promoters are derepressed. Recently, positive Fur-Fe2+
regulation of the E. coli iron superoxide dismutase promoter was reported. The mechanism of this activation has not been elucidated yet, but it does not involve an FBS (16).
Several iron transport genes are also positively regulated by their
cognate ligands via a surface signaling mechanism (8, 13).
The ferric dicitrate uptake system is the only ligand-inducible iron
uptake system known in E. coli. It has been extensively
studied, and the following regulation model has been proposed and
refined (8, 17, 22). Binding of ferric dicitrate to the
outer membrane FecA receptor generates transmission of a signal from
the periplasmic N-terminal extension of FecA to the C-terminal
periplasmic domain of inner membrane protein FecR via the Ton system.
FecR then transduces the signal across the cytoplasmic membrane and
activates the sigma factor FecI. FecI binds to the RNA polymerase core
enzyme, and the complex initiates transcription of the
fecABCDE operon. The fecIR and
fecABCDE operons are linked on the chromosome, and
both are Fur repressed (1). A similar surface signaling
mechanism has been identified in Pseudomonas putida WCS358
for pupB regulation (24). PupB is a
receptor for pseudobactins BN7 and BN8. Upon binding to
PupB, these siderophores induce transduction of a signal from the
receptor to the cytoplasmic PupI sigma factor via the Ton system
and the PupR antisigma factor localized in the envelope. The
pupIR operon contains an FBS and is located
upstream from pupB (24).
Iron uptake systems and their regulation in Bordetella have
not been completely characterized yet. Bordetella
bronchiseptica, the etiologic agent of swine atrophic rhinitis and
kennel cough, and Bordetella pertussis, the agent of
whooping cough, both secrete the siderophore alcaligin
(34). The Bordetella fur gene has been
identified and has been shown to mediate iron regulation in these
species (6, 10; Pradel and Locht, Abstr. 95th Gen. Meet.
Am. Soc. Microbiol. 1995, abstr. B-357, 1995). The alcABCDE operon encodes enzymes of the alcaligin biosynthesis pathway
(19, 21, 39). AlcR is an AraC type of activator of the
alc operon and of the alcaligin receptor gene
fauA (7, 11, 39). The alcABCDE,
alcR, and fauA promoters contain FBS.
In addition to alcaligin, B. bronchiseptica and B. pertussis have been shown to use enterobactin, heme, hemoglobin,
ferrichrome, and desferal as iron sources (4). Four
exogenous siderophore receptors have been identified in B. bronchiseptica: BfeA, BfrA, BfrB, and BfrC (3-5).
B. pertussis produces only three of these, and BfrA is
specific to B. bronchiseptica (4). BfeA binds
enterobactin, but the ligands of the Bfr receptors have not been
identified yet. The Ton system has been shown to be required for
utilization of siderophores, heme, and hemoglobin (36,
40).
To gain more insight into the iron regulatory network in
Bordetella, we analyzed a B. bronchiseptica
Fur-repressed gene that we had previously isolated in a genetic screen
analysis by a Fur titration assay (FURTA) (39, 46). This
gene, named bfrZ, encodes a new TonB-dependent receptor for
an unidentified ligand, probably an exogenous siderophore. We show here
that bfrZ expression is controlled by BupI and BupR, a pair
of sigma-antisigma transcription factors. We suggest that upon binding
of the cognate siderophore to BfrZ, a signal is transduced through the
envelope to BupI present in the cytoplasm to induce bfrZ transcription.
Bacterial strains, plasmids, and growth conditions.
The
strains and plasmids used in this work are listed in Table
1. E. coli strains were grown
at 37°C in Luria-Bertani (LB) medium (33) or on solid
media obtained by adding 1.5% (wt/vol) Bacto Agar. In the FURTA
(46), the Lac phenotype of E. coli H1717
transformants was tested on MacConkey lactose agar plates containing 50 µM FeCl3. Bordetella strains were grown at
37°C on Bordet-Gengou agar plates supplemented with 1% glycerol and 15% sheep blood. PhoA and
0021-9193/01/$04.00+0 DOI: 10.1128/JB.183.9.2910-2917.2001
Copyright © 2001, American Society for Microbiology. All rights reserved.
Expression of the Putative Siderophore Receptor Gene
bfrZ Is Controlled by the Extracytoplasmic-Function
Sigma Factor BupI in Bordetella bronchiseptica
and
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ABSTRACT
Top
Abstract
Introduction
Materials and Methods
Results
Discussion
References
-BfrZ+ isogenic pair was tested for
utilization of 132 different siderophores as iron sources. None of
these iron sources acted as a ligand for BfrZ. Translational
bfrZ::phoA and transcriptional
bfrZ::lacZ fusions were introduced
into the B. bronchiseptica bfrZ locus. No alkaline
phosphatase or
-galactosidase activity was detected. Sequence
analysis of the bfrZ upstream region revealed the presence of two tightly linked genes, bupI and bupR.
Both of these genes are located downstream from a Fur-binding sequence.
BupI is homologous to Escherichia coli FecI and
Pseudomonas putida PupI and belongs to the family of
extracytoplasmic-function sigma factors involved in transcription of
genes with extracytoplasmic functions. BupR is homologous to the FecR
and PupR antisigma factors and is predicted to be localized in the
inner membrane. Similar to the surface signaling receptors FecA and
PupB, BfrZ bears an N-terminal extension. We found that
bfrZ is not transcribed when bupI and
bupR are expressed at the same level. However,
overexpression of bupI from a multicopy plasmid triggers
bfrZ transcription, and under these conditions BfrZ was
detected in membrane fractions. By analogy with the FecI-FecR-FecA and
PupI-PupR-PupB systems, our data suggest that bfrZ
expression is inducible by binding of the cognate ligand to BfrZ and
transduction of a signal through the envelope.
![]()
INTRODUCTION
Top
Abstract
Introduction
Materials and Methods
Results
Discussion
References
18 M, and in the host iron is
sequestered by proteins such as transferrin and lactoferrin (for a
recent review see reference 9). To fulfill their iron
requirement, bacteria have developed very efficient iron uptake
systems. Most aerobic and facultatively aerobic bacteria secrete one or
two small Fe3+-complexing molecules, named siderophores,
and produce specific siderophore receptors at their surfaces. Bacteria
usually synthesize multiple receptors to scavenge exogenous iron
chelates secreted by other microbial species. However, some pathogens
(for instance, Neisseria spp. and Haemophilus
influenzae) use heme and the ferriproteins of their hosts as iron
sources without producing siderophores (20, 27, 42).
Serratia marcescens and Pseudomonas aeruginosa secrete a small protein which can release heme from hemoglobin and then
bind to a receptor at the cell surface (28).
![]()
MATERIALS AND METHODS
Top
Abstract
Introduction
Materials and Methods
Results
Discussion
References
-galactosidase activities of E. coli or B. bronchiseptica strains were assayed on LB
medium plates containing 40 µg of bromo-4-chloro-3-indolyl-phosphate
(XP) (Sigma, St. Quentin Fallavier, France) per ml and 40 µg of
5-bromo-4-chloro-3-indolyl-
-D-galactopyranoside (X-Gal)
(Sigma), respectively. Liquid cultures of Bordetella spp. were grown in modified Stainer-Scholte (SS) medium containing 10 mg of
FeSO4 · 7H2O per liter
(40). The low-iron medium used was SS medium without added
FeSO4 · 7H2O (SS-Fe). To ensure that the
conditions were iron limiting for B. bronchiseptica, the
Chrome Azurol S assay was used to assess alcaligin production by
Bordetella cells grown in SS-Fe as described previously
(40). Modulation conditions were obtained by adding 50 mM
MgSO4 to SS medium or to LB medium plates. When necessary,
antibiotics were included in the growth media at the following final
concentrations: ampicillin, 150 µg/ml; chloramphenicol, 30 µg/ml;
gentamicin, 10 µg/ml; kanamycin, 30 or 300 µg/ml for pEP453
TnphoA mutagenesis; and streptomycin, 100 µg/ml.
TABLE 1.
Bacterial strains and plasmids
DNA techniques. Plasmid DNA was isolated by the alkaline lysis method (43). Restriction enzymes and T4 DNA ligase were obtained from Roche (Meylan, France) and were used according to standard procedures (43). Cloned DNA fragments were sequenced by using an ABI PRISM dye terminator cycle sequencing kit and an ABI PRISM 377 sequencer (PE Applied Biosystems, Warrington, United Kingdom) along with a combination of universal, reverse, and custom-synthesized primers. PCRs were carried out with Vent DNA polymerase (New England Biolabs, Inc., Beverly, Mass.).
Computer analysis of sequences. The nucleotide and protein sequences were analyzed by using the DNA Strider 1.2 software (Service de Biochimie et de Génétique Moléculaire du CEA, Saclay, France). Sequence similarities were identified with the BLASTN, BLASTX, and BLASTP programs (http://www.ncbi.nlm.nih.gov/BLAST/). Sequence alignment was performed with the multalin 5.3.3 software (12). Oligonucleotides were designed with the Oligo 5.0 software (NBI, Plymouth, Minn.).
Construction of pEP278 and pEP416 and cloning of the
bfrZ 3' extremity.
Plasmid pEP278 bearing
bfrZ' on a 2.6-kb PstI fragment was isolated with
the FURTA from a partial B. bronchiseptica BB1015 genomic
library as described previously (39). The 2.4-kb
SphI-PstI fragment bearing 'bfrZ' was
isolated from pEP278 and cloned into pUC19. The resulting plasmid was
introduced into E. coli GM2163 dcm
(Cmr) and then reisolated from this strain to enable
digestion with StuI. The HincII Kmr
cassette was isolated from pUC4K and inserted into the unique StuI site of bfrZ (Fig.
1). The resulting plasmid, pEP410, was digested with SphI and XbaI, and the 3.7-kb
fragment bearing bfrZ::Kmr was cloned
into the Bordetella suicide vector pJQ200SK, digested with
the same restriction enzymes, to obtain pEP416. E. coli SM10 was transformed with pEP416 and used as a donor in conjugations with
B. bronchiseptica BB1015. B. bronchiseptica
BBEP231 was isolated as an Smr Kmr
Gns exconjugant, and the correct allelic exchange in this
strain was confirmed by Southern blot hybridization (data not shown). To isolate the bfrZ downstream region, genomic DNA of
BBEP231 was digested with SphI, and 4- to 5-kb restriction
fragments were cloned into pUC18. Recombinant pEP431 Apr
Kmr was selected, and the nucleotide sequence of the
bfrZ 3' extremity was determined.
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Siderophore utilization plate assay. B. bronchiseptica cells and plates were prepared as described previously (40). Filter paper disks impregnated with 10 µl of a siderophore solution (5 mM) were applied to the surfaces. Growth stimulation around the disks was evaluated after 12 h of incubation at 37°C.
Construction of pEP453 and TnphoA mutagenesis. The complete bfrZ gene was reconstituted in Bordetella replicative plasmid pBBR1MCS as a 3-kb PstI-SacI fragment to obtain pEP453. TnphoA (30) was introduced into E. coli CC118(pEP453) by mating with E. coli CC102. Transpositions of TnphoA onto pEP453 were selected on LB medium containing XP and 300 µg of kanamycin per ml. Plasmids were prepared from pools of bacteria and transformed into E. coli CC118. None of the resulting Cmr Kmr colonies showed a strong PhoA+ phenotype (no dark blue colonies). One clone which exhibited rather low yet detectable PhoA activity (pale blue colonies) was named CC118(pEP482) and was studied further. Sequencing of the fusion joint indicated that TnphoA was inserted in frame into bfrZ, 65 bp downstream from the StuI site (Fig. 1). Plasmid pEP482 was digested with BamHI to delete the transposase gene and was religated to generate pEP484.
Construction of B. bronchiseptica bfrZ::phoA chromosomal fusions. A 6.6-kb BamHI-EcoRV fragment containing bfrZ::phoAKmr from pEP484 was inserted into the Bordetella Gnr suicide vector pJQ200SK opened with BamHI and SmaI to generate pEP515. As this construct bore the bfrZ promoter region up to the PstI site, pEP515 integration into the chromosome conserved an intact bfrZ copy. E. coli SM10(pEP515) was mated with B. bronchiseptica BB1015 and BBEP173 fur173 to isolate the bfrZ::phoA Smr Kmr exconjugants BBEP250 and BBEP251, respectively.
Construction of B. bronchiseptica bfrZ::lacZ mutants. An internal bfrZ fragment was amplified from pEP278 by using oligonucleotides HindIII-bfrZ (5'-AAGCTTCGTTGTCGGGCAGCAATCTC-3') and bfrZ-BamHI (5'-GGATCCGCTCTTGGGCTCCTGGAAG-3'), which hybridized 264 bp downstream from the SphI site and 136 bp upstream from the ScaI site (complementary strand), respectively. The 680-bp PCR product was cloned into the HincII site of pBCSK+. The resulting plasmid was digested with HindIII and BamHI, and the 680-bp fragment obtained was ligated into pFus2 (2) digested with the same enzymes to generate pEP589. This Bordetella Gnr suicide plasmid was introduced into B. bronchiseptica BB1015, BBEP173 fur173, and BBEP205 alcR::Kmr by conjugation with E. coli SM10(pEP589). For each strain, one Smr Gnr exconjugant bearing pEP589 integrated into the chromosome was studied further; these exconjugants were designated BBEP185, BBEP186, and BBEP187. In contrast to the bfrZ::phoA translational mutants, the bfrZ::lacZ transcriptional mutants were defective for BfrZ production, as pEP589 did not contain the bfrZ promoter.
Cloning of the bfrZ upstream region and construction of pEP624 and pEP625. B. bronchiseptica BBEP185 genomic DNA was digested with NotI, which did not cut pEP589, and ligated. The ligation mixture was used to transform E. coli XL1-Blue to Gnr. A recombinant plasmid resulting from intramolecular ligation of a chromosomal NotI fragment containing pEP589 was isolated. Restriction mapping of this plasmid enabled us to localize the bfrZ upstream region in a 6-kb EcoRI fragment. This fragment was cloned into pBCSK+ to obtain pEP596. The 3-kb region upstream from bfrZ was sequenced up to the KpnI site shown in Fig. 1. Plasmids pEP624 and pEP625 were derivatives of pBBR1MCS containing a 3-kb NsiI-ScaI fragment bearing bupI bupR bfrZ' cloned into the NsiI and SmaI sites and a 1.2-kb NsiI-SalI bupI bupR' fragment inserted into the NsiI and SalI sites, respectively.
Cell fractionation and protein analysis. Cells from 100-ml B. bronchiseptica cultures grown in SS-Fe to an optical density at 600 nm of 3 were harvested by centrifugation, resuspended in 10 ml of 10 mM HEPES (pH 7.4) containing DNase (10 µg/ml) and disrupted with a French pressure cell (SLM-Aminco, Rochester, N.Y.). The pressates were centrifuged at 2,065 × g for 10 min at 4°C to sediment cellular debris and unbroken cells. Whole-cell lysates were then centrifuged at 111,000 × g for 1 h at 4°C to separate soluble and insoluble cell fractions. Whole-membrane pellets were resuspended in 3 ml of 1% Sarkosyl in 10 mM HEPES buffer (pH 7.4) and incubated for 30 min at room temperature. The suspensions were centrifuged at 111,000 × g for 1 h at 4°C to pellet outer-membrane-enriched fractions. The pellets were resuspended in 300 µl of 10 mM HEPES buffer (pH 7.4). After solubilization at 95°C for 5 min in Laemmli buffer (26), proteins were resolved by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) by using a 5% stacking gel and a 10% separating gel.
Nucleotide sequence accession number. The nucleotide sequence of the B. bronchiseptica 5,909-bp KpnI-SphI DNA fragment has been assigned EMBL accession no. AJ251793.
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RESULTS |
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Identification of bfrZ.
The FURTA
(46) was used to detect potential Fur-binding fragments in
a B. bronchiseptica genomic DNA library as described previously (39). In this genetic screen analysis,
recombinant high-copy-number plasmids were introduced into an E. coli
lac strain bearing a Fur-repressible
fhuF::lacZ fusion
(Lac
phenotype in high-iron growth conditions) and
transformants were selected on iron-rich MacConkey agar plates
containing antibiotics. Cloned sequences containing FBS titrated out
the Fur repressor, resulting in derepression of the
chromosomal lacZ fusion. Such transformants formed red
colonies on MacConkey agar plates (Lac+ phenotype). Plasmid
pEP278 was isolated and studied further since it gave a strong
Lac+ phenotype in the assay. Restriction mapping showed
that pEP278 contained a 2.6-kb PstI DNA fragment (Fig. 1).
Deletion of a 200-bp PstI-SphI fragment at one
end of the insert conferred a Lac
phenotype in the FURTA,
suggesting that this region contained an FBS (Fig. 1). The nucleotide
sequence of the PstI fragment was determined. Consistent
with the genetic data, a sequence homologous to the recently reexamined
E. coli Fur-binding consensus sequence (18) was
identified 123 bp upstream from the SphI site
(aATAAcGAatcTCAaTAT; 12 of 18 matches). Sequence analysis
revealed a large open reading frame (ORF) starting 80 bp downstream
from the putative FBS and extending to the opposite PstI
site. Of three potential in-frame initiation codons, only the first
ATG was preceded by a sequence resembling the canonical AAGAGG
E. coli ribosome binding site. Thus, translation most
probably starts at this ATG, which is located 4 bp downstream from a
putative AAGGGAGAA ribosome binding site.
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Characterization of a bfrZ mutant and cloning of the bfrZ 3' terminus. B. bronchiseptica BBEP231, a bfrZ::Kmr mutant, was constructed by allelic exchange as described in Materials and Methods. Whole-membrane and outer-membrane-enriched fractions of BBEP231 and the BB1015 parent strain grown in low-iron medium were analyzed by SDS-PAGE. No difference in the protein profiles was observed, suggesting that BfrZ is not abundantly present in the outer membrane (data not shown). BBEP231 exogenous siderophore utilization and BB1015 exogenous siderophore utilization were compared in a plate bioassay. More than 110 pyoverdins and 22 other siderophores from the Jean-Marie Meyer collection (Strasbourg, France) were tested. The two strains had identical iron source utilization profiles (data not shown). Thus, none of the siderophores tested proved to be the BfrZ ligand.
To isolate the bfrZ 3' extremity, BBEP231 genomic DNA was digested with SphI and cloned into pUC18 to obtain pEP431. Sequencing of the 900-bp BamHI-SphI fragment indicated that the bfrZ stop codon is located 123 bp downstream from the PstI site (Fig. 1). The deduced mature BfrZ protein is a 819-residue molecule with a calculated molecular mass (MM) of 91.3 kDa. Its C-terminal sequence contains a TonB-dependent receptor signature, TIVWGNERRAMLNAQLSF (PROSITE accession no. PDOC00354). A truncated ORF starting about 200 bp downstream from bfrZ and having the same orientation was detected. In a 112-residue overlap, the translation product exhibited 59% similarity with a 127-aa putative inner membrane protein encoded by a Sphingomonas aromaticivorans catabolic plasmid (GenBank accession no. O58848).Expression of bfrZ::phoA and
bfrZ::lacZ fusions.
A
translational bfrZ::phoA fusion was
isolated by TnphoA mutagenesis of pEP453, an E. coli-Bordetella shuttle vector containing the whole
bfrZ gene on a PstI-SphI fragment. The
fusion junction of the TnphoA insertion is indicated in Fig.
1. The mutagenized plasmid, pEP482, and its derivative deleted for the
transposase gene, pEP484, conferred low but detectable levels of PhoA
activity to E. coli
phoA cells (data not shown). However,
B. bronchiseptica BB1015(pEP484) grown in low-iron
conditions expressed no detectable PhoA activity, although these
conditions were sufficient to induce alcaligin production. In addition,
no PhoA activity was detected in B. bronchiseptica BBEP205
alcR::Kmr bearing pEP484, suggesting that
bfrZ expression is not repressed by AlcR, the regulator of
alcaligin biosynthesis and alcaligin receptor genes (data not shown).
B. pertussis BPSM(pEP484) did not produce any detectable
PhoA activity either (data not shown). The same
bfrZ::phoA fusion was introduced into the
bfrZ locus of B. bronchiseptica BB1015 and its
fur173 derivative, BBEP173. During growth in low-iron medium
the resulting strains, BBEP250 and BBEP251, expressed no PhoA activity.
Taken together, these observations suggest that either the hybrid
BfrZ-PhoA protein is highly unstable in Bordetella or
additional sequences not present in pEP484 are required for
bfrZ expression in Bordetella.
-galactosidase activity in low-iron growth conditions.
These data suggest that bfrZ transcription is tightly
regulated, as has been shown for several siderophore receptor genes in
Pseudomonas spp. (13).
Identification of the bupI and bupR genes upstream from bfrZ. The bfrZ upstream region was subcloned from pEP595, a large recombinant plasmid generated by digestion of BBEP185 bfrZ::lacZ genomic DNA with NotI followed by intramolecular ligation. Sequence analysis of the 2.6-kb KpnI-PstI fragment upstream from bfrZ revealed the presence of two tightly linked ORFs separated from bfrZ by 100 bp and having the same orientation (Fig. 1). BLASTP searches performed with sequences in the GenBank database indicated that the first ORF translates into a product homologous to P. putida PupI and E. coli FecI ECF sigma factors (GenBank accession no. S46355 and JV0111, respectively). The second ORF encodes a protein similar to the P. putida PupR and E. coli FecR antisigma factors (GenBank accession no. S46356 and B37804, respectively). By analogy with the P. putida system, the ORFs were designated bupI and bupR.
The deduced BupI protein is a 177-aa molecule with a calculated MM of 18.8 kDa. It exhibits 29% identity and 49% similarity with PupI in a 130-aa overlap and 26% identity and 50% similarity with FecI in a 129-aa overlap. An alignment of the sequences of these proteins is shown in Fig. 3A. Similar to FecI and PupI, BupI is predicted to possess a C-terminal helix-turn-helix motif. The deduced BupR protein is a 344-aa molecule with a calculated MM of 38.2 kDa. It exhibits 24% identity and 42% similarity with FecR in a 306-aa overlap and 22% identity and 37% similarity with PupR in a 310-aa overlap (Fig. 3B). FecR contains a unique hydrophobic transmembrane segment (aa 85 to 105) which anchors it in the inner membrane, while its N- and C-terminal regions are cytosolic and periplasmic, respectively (37, 48). Protein structure prediction programs suggested that PupR and BupR both have this topology and that they possess a transmembrane region formed by aa 85 to 105 and aa 103 to 123, respectively (http://www.bmm.icnet.uk/~prof).
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bupI overexpression induces bfrZ
expression.
To test whether BupI and BupR are involved in
bfrZ expression, we constructed pEP624 and pEP625, which
were derivatives of Bordetella replicative plasmid pBBR1MCS
bearing the intact bupI bupR operon and
bupI and a truncated bupR gene,
respectively. These plasmids were introduced into B. bronchiseptica BBEP250 bfrZ::phoA.
BBEP250(pBBR1MCS) and BBEP250(pEP624) were found to form
white patches on plates containing XP (PhoA
phenotype), while the BBEP250(pEP625) patches were blue
(PhoA+) (Fig. 4). The
BB1015(pEP625) control strain was PhoA
, which showed
that pEP625 did not induce expression of a resident B. bronchiseptica phosphatase activity. In addition, transfer of
pEP625 into BBEP185 induced bfrZ::lacZ
expression (data not shown). These results indicated that an
excess of BupI over BupR induces bfrZ transcription.
BBEP250(pBBR1MCS), BBEP250(pEP624), BBEP250(pEP625),
and BBEP185(pEP625) were grown in the presence of 50 mM
MgSO4 to modulate virulence gene expression. Expression of
the bfrZ fusions was not affected (data not shown),
suggesting that bfrZ is not controlled by the BvgA-BvgS
virulence factor regulatory system (29).
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DISCUSSION |
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We isolated and characterized the bupI bupR bfrZ locus, the first example of a putative inducible exogenous siderophore uptake system in B. bronchiseptica. The bupI bupR genes seem to be transcribed as a single unit from a Fur-repressed promoter, while bfrZ expression requires an excess of BupI over BupR in the absence of the cognate ligand. By analogy with the well-characterized E. coli FecI-FecR-FecA (1, 8) and P. putida PupI-PupR-PupB (24) systems, our data suggest that BupI is an ECF sigma factor localized in the cytoplasm, BupR is an antisigma factor anchored in the inner membrane, and BfrZ is an outer membrane siderophore receptor. However, in the absence of the phenotype of a bfrZ mutant with respect to siderophore uptake, we cannot rule out the possibility that BfrZ is involved in transport of a noniron ligand. Nicholson and Beall previously isolated another Fur-repressed B. bronchiseptica putative ECF sigma-antisigma pair, BtfI-BtfR, but its target gene(s) has not been identified yet (M. L. Nicholson and B. Beall, Abstr. 98th Gen. Meet. Am. Soc. Microbiol., abstr. B-60, 1998). Other observations have suggested that expression of the bfeA enterobactin receptor gene is inducible, as uptake experiments have indicated that the ability of B. bronchiseptica to bind enterobactin is increased when cells are precultured with this exogenous siderophore (47). However, the regulation mechanism remains to be elucidated. In P. aeruginosa, induction of the enterobactin uptake system involves phosphorylation of a two-component regulatory system (14, 15).
The G+C content of the bupI bupR bfrZ locus is 67%, which is similar to those of other Bordetella genes. Southern blot experiments indicated that bfrZ is not present in the strictly human pathogen B. pertussis. We recently used the Bordetella BLAST server of the Sanger Centre to scan the available B. pertussis and B. bronchiseptica genomic DNA sequences for homology with bfrZ (http://www.sanger.ac.uk). No bfrZ sequence was detected in the 105 assembled contigs, which covered most of the B. pertussis genome. A unique bfrZ gene was identified in the 1,777 contigs, which covered part of the B. bronchiseptica genome. The B. pertussis genome is about 1 Mb smaller than that of B. bronchiseptica (http://www.sanger.ac.uk). The latter species has a much wider ecological niche as it can survive and grow even in lakewater (38). Another siderophore receptor, BfrA, has also been shown to be specific to B. bronchiseptica (4). Considering the importance of iron to sustaining life, it is not surprising that B. bronchiseptica has evolved or conserved a significant iron-scavenging potential in addition to other survival strategies.
So far, about 200 siderophores secreted by bacteria or fungi have been identified, but many more remain to be isolated (35). We were able to test a wide range of pyoverdins and other siderophores for their ability to stimulate the growth of B. bronchiseptica in iron-depleted conditions. In addition to the previously identified siderophores ferrichrome and desferal, we observed that coprogen, schizokinen, ferricrocin, vicibactin, ferrichrysin, ferrirubin, aerobactin, protochelin, and several pyoverdins are iron sources for B. bronchiseptica (data not shown). However, we were unable to identify the BfrZ ligand, either because it is absent from the siderophore library or because it is transported via a second receptor in a B. bronchiseptica bfrZ null mutant. Koster et al. reported that a P. putida pupI::Tn5 mutant still uses pseudobactin BN8 as an iron source although it does not produce the cognate receptor PupB, suggesting that an additional receptor for the BN8 siderophore is produced in this strain (23). Pseudobactins BN7, BN8, and M114 are not included in the collection that we tested; thus, we cannot comment on their utilization by B. bronchiseptica. We used the B. bronchiseptica bfrZ+ bfrZ::phoA mutant as a reporter strain to assay bfrZ induction in the presence of siderophores from the collection. No increase in PhoA activity was detected in a plate test, suggesting that the BfrZ ligand is missing from the siderophore library (data not shown).
In the E. coli ferric dicitrate transport system, the N-terminal cytoplasmic region of FecR is required and is sufficient for fecA expression (48). An E. coli strain bearing a nonsense mutation in codon 19 of fecR does not express fecA, but the production of a 56-residue FecR is sufficient to activate the FecI sigma factor to transcribe fecA in the absence of the citrate inducer. In P. putida, disruption of pupR by deletion of its 5' region and insertion of an Smr interposon triggers constitutive pupB expression (24). Thus, PupR is not necessary for pupB expression. Overproduction of PupI from a plasmid in conjunction with chromosomal expression of pupR leads to pupB expression. PupR appears to be more like a stoichiometric repressor of PupI than an enzymatic activator (24). However, intact PupR is required for optimal pupB transcription in the presence of the pseudobactin BN8 inducer (24). The Fec and Pup systems are related but may differ with respect to the role of the antisigma factor. In B. bronchiseptica, construction of bupR mutants and additional bfrZ expression studies are required to evaluate the function of BupR. As the cognate siderophore of BfrZ has not been identified yet, construction of a chimeric receptor can also be envisioned. By analogy with the PupB-PupA chimera constructed by Koster et al. (24), a hybrid protein formed by the N-terminal extension of BfrZ and the mature FauA alcaligin receptor could be tested for its ability to transduce a signal to the BupI-BupR system and initiate bfrZ transcription upon binding of alcaligin to the FauA moiety.
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ACKNOWLEDGMENTS |
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We thank Jean-Marie Meyer for kindly welcoming E.P. in his lab to test his siderophore collection. We are grateful to Eve Willery for technical assistance with automatic sequencing, to Emmanuelle Fort for photographic work, and to Dominique Raze for friendly computer assistance.
This work was supported by the INSERM, the Institut Pasteur de Lille, the Région Nord Pas-de-Calais, and the Ministère de l'Enseignement Supérieur et de la Recherche.
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FOOTNOTES |
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* Corresponding author. Mailing address: INSERM U447, Institut Pasteur de Lille, 59019 Lille Cedex, France. Phone: (33) 3 20 87 11 51. Fax: (33) 3 20 87 11 58. E-mail: camille.locht{at}pasteur-lille.fr.
Present address: INSERM CJF 9606, Faculté de Médecine,
13385 Marseille Cedex 05, France.
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