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Journal of Bacteriology, January 2002, p. 119-125, Vol. 184, No. 1
0021-9193/01/$04.00+0 DOI: 10.1128/JB.184.1.119-125.2002
Copyright © 2002, American Society for Microbiology. All Rights Reserved.
Institute for Animal Health, Compton Laboratory, Compton, Berkshire, RG20 7NN, United Kingdom
Received 19 June 2001/ Accepted 11 October 2001
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45 kDa) from Streptococcus uberis strain SK880 had been identified previously (L. B. Johnsen, K. Poulsen, M. Kilian, and T. E. Petersen. Infect. Immun. 67:10721078, 1999). The strain was isolated from a clinical case of bovine mastitis. The isolate was found not to secrete PauA, a bovine plasminogen activator expressed by the majority of S. uberis strains. Analysis of the locus normally occupied by pauA revealed an absence of the pauA open reading frame. However, an alternative open reading frame was identified within the same locus. Sequence analysis of the putative gene suggested limited but significant homology to other plasminogen activators. A candidate signal peptide sequence and cleavage site were also identified. Expression cloning of DNA encoding the predicted mature protein (lacking signal peptide) confirmed that the open reading frame encoded a plasminogen activator of the expected size, which we have named PauB. Both native and recombinant forms of PauB displayed an unexpectedly broad specificity profile for bovine, ovine, equine, caprine, porcine, rabbit, and human plasminogen. Clinical and nonclinical field isolates from nine United Kingdom sites were screened for the pauB gene and none were identified as carrying it. Similarly, clinical isolates from 20 Danish herds were all found to encode PauA and not PauB. Therefore, PauB represents a novel but rare bacterial plasminogen activator which displays very broad specificity. |
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Once activated, plasmin can associate with the streptococcal cell surface (21, 22). Bound plasmin(ogen) has been proposed to confer the ability to access deep tissue sites upon certain streptococcal species through the action of plasmin upon extracellular matrix proteins (22). Furthermore, it has also been suggested that by gaining access to essential nutrients through the hydrolytic action of plasmin upon milk proteins, nutritionally fastidious microorganisms such as Streptococcus uberis could colonize environments such as the bovine mammary gland (16). It has been recognized that streptococci produce a diverse range of secreted plasminogen activators capable of converting plasminogen to plasmin and that this occurs in a host-specific manner. Most Lancefield group A, C, and G streptococci isolated from human sources secrete the human plasminogen activator SK. Further plasminogen activators identified in equine and porcine isolates of Streptococcus equisimilis which display little sequence similarity to streptokinase have been described (6). Interestingly, these plasminogen activators exhibit hierarchical preferences for mammalian plasminogens headed in each case by plasminogen obtained from the respective host animals (25, 27). Novel plasminogen activators have also been identified for isolates obtained from bovine streptococcal infections. A 32-kDa plasminogen activator isolated from S. uberis, PauA, displayed a preference for bovine, ovine, and equine plasminogen but was unable to activate porcine or human plasminogen (18). Similarly, a further unrelated 16-kDa plasminogen activator (designated PadA for plasminogen activator dysgalactiae A) was identified in bovine isolates of Streptococcus dysgalactiae which could activate bovine, ovine, equine, and rabbit but not human plasminogens (20). In the course of cloning pauA, which encodes the 32-kDa plasminogen activator from S. uberis, a single isolate (SK880) from a panel of 11 strains tested was reported to display plasminogen-dependent fibrinolysis due to a plasminogen activator of
45 kDa (14). This molecule failed to cross-react with antibody raised to PauA, suggesting that significant differences between the two S. uberis plasminogen activators existed (14).
We report here the molecular characterization of a second plasminogen activator (PauB) isolated from S. uberis (SK880) and discuss the significance of this molecule in terms of our understanding of the mechanism of action of streptococcal plasminogen activators and their role in disease.
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Extraction of genomic DNA. Streptococcal genomic DNA was prepared by using a variation of the method of Hill and Leigh (13). Briefly, 1.5 ml of an overnight culture was centrifuged at 10,000 x g for 2 min, and the cell pellet was washed with 500 µl of 10 mM Tris-Cl-5 mM EDTA (pH 7.8). Bacterial cell walls were disrupted by resuspension in 375 µl of 10 mM Tris-Cl-5 mM EDTA (pH 7.8) containing 30 U of mutanolysin and 10 mg of lysozyme (both from Sigma) per ml and subsequent incubation at 37°C for 30 min. Total cell lysis was achieved by addition of 20 µl of sodium dodecyl sulfate (SDS) solution (20% [wt/vol] in 50 mM Tris-Cl, 20 mM EDTA [pH 7.8]) and proteinase K (Sigma) to a final concentration of 150 µg/ml and a further incubation at 37°C for 1 h. Cell wall material was removed by precipitation following the addition of 200 µl of saturated NaCl and subsequent centrifugation at 12,000 x g for 10 min. The supernatant was extracted with phenol chloroform and DNA precipitated by addition of 2 volumes of absolute ethanol. DNA pellets were washed with 70% aqueous ethanol and air dried prior to resuspension in Tris-EDTA (TE) buffer containing 20 µg of RNase A (Sigma) per ml.
DNA amplification and further analysis. Amplification of DNA was performed using an Omn-E thermal cycler (Hybaid Ltd., Ashford, United Kingdom), with conditions and primers as listed in Table 1. Amplified DNA was purified with DNA Purification Kit II spin columns (Hybaid) and sequenced directly by Cambridge Bioscience, Cambridge, United Kingdom. Sequence analysis was performed using Wisconsin Package software version 10.1, Genetics Computer Group (GCG), Madison, Wis. Analysis of the putative signal peptide of PauB was performed with SignalP software available at http://genome.cbs.dtu.dk/services/SignalP/ (26). Digoxigenin-labeled probe DNA was generated by thermal cycling using a DIG DNA labeling mix (Roche Molecular Biochemicals).
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TABLE 1. Oligonucleotide primer sequences and their applications
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0.1 mg of immunoglobulin G per ml) prior to adding anti-digoxigenin Fab fragment during the visualization stage. Expression cloning of plasminogen activators. Genomic DNA encoding mature PauA and the predicted mature PauB open reading frame (ORF) was amplified using oligonucleotide primer pairs P44-P45 and P169-P170, respectively, under the conditions specified in Table 1. The primers were designed in accordance with the requirements for ligation-independent cloning (1) into the inducible expression vector pCAL-n-FLAG (Stratagene). Amplified DNA was prepared for cloning as described in the Affinity LIC Cloning and Protein Purification Kit manual (Stratagene), and recombinants were identified by sequence analysis of plasmid DNA prepared from E. coli SoloPack host cells using QIAprep spin columns (Qiagen). The pCAL-n-FLAG expression vector enabled production of fusion proteins composed of a 4-kDa calmodulin-binding protein (CBP) linked via a short polypeptide encoding the FLAG epitope to the mature plasminogen activators. Expression of recombinant fusion proteins was induced by growth of E. coli BL21(DE3)pLysS (Stratagene) harboring the CBP-FLAG-plasminogen activator constructs in Luria-Bertani medium supplemented with 1 mM IPTG (isopropyl-ß-d-thiogalactopyranoside) at 37°C.
Partial purification and N-terminal sequencing of PauB from S. uberis SK880. Todd-Hewitt broth cultures of S. uberis SK880 were grown overnight at 37°C to stationary phase. Cleared culture supernatant was recovered following centrifugation at 10,000 x g for 2 min. PauB was selectively precipitated typically from 5 ml of broth culture using sequential 30 and 40% ammonium sulfate saturation at room temperature for 2 h. The precipitated material recovered following centrifugation at 10,000 x g for 5 min was redissolved in approximately 500 µl of phosphate-buffered saline. Samples were prepared for N-terminal sequence analysis according to the method of Coligan et al. (8). Briefly, samples were prepared for SDS-polyacrylamide gel electrophoresis (PAGE) in the concentration range of 100 to 200 pmol. Polyacrylamide gels (4% stacking; 8% resolving) were cast well in advance to allow complete polymerization according to the method of Laemmli (17). Gels were prerun with additional 2 mM mercaptoacetic acid present in the upper buffer reservoir to scavenge amino-terminal-blocking free radicals. Reduced and denatured samples were resolved at 15 V/cm and then transblotted to Immobilon-PSQ (polyvinylidene fluoride) transfer membrane (Millipore) with 10 mM cyclohexylamino propane sulfonic acid (pH 11)-1 mM dithiothreitol-10% (vol/vol) methanol as transfer buffer at 100 V for 1 h. Transferred protein was visualized on the membrane by rinsing with distilled water followed by immersion in 0.1% (wt/vol) amido black for 5 s and extensive destaining in distilled water. A heavily stained band at the appropriate molecular weight was excised and prepared for amino acid sequence analysis.
Zymographic analysis of S. uberis plasminogen activators. Samples containing partially purified plasminogen activators PauA and PauB were prepared by ammonium sulfate precipitation from culture supernatants of S. uberis 0140J and SK880, respectively, as described above. Samples containing approximately 50 ng of plasminogen activator were denatured and reduced but not boiled prior to being resolved by SDS-PAGE alongside prestained molecular weight marker proteins (New England Biolabs, Inc.). SDS was removed by washing the gel twice in 2.5% Triton X-100 for 30 min at room temperature with gentle shaking. The acrylamide gel was overlaid upon a 1% agarose gel made with phosphate-buffered saline and containing 1% (wt/vol) Oxoid skim milk and 1 U of bovine plasminogen (Sigma) per ml and incubated at 37°C. Polaroid 667 film was used to record images (1/125 s, f11) showing proteolytic zones due to the activity of activated plasminogen.
Specificity profiling of S. uberis plasminogen activators. The secreted (mature) forms of plasminogen activators from S. uberis 0140J and SK880 were partially purified from broth culture supernatants as described above. Expression of CBP-tagged recombinant versions of the mature forms of the PauA and PauB plasminogen activators described above was induced in overnight broth cultures. Crude cell lysates of the recombinant clones were prepared by three successive freeze-thaw cycles of bacterial cells resuspended in 0.5 volume of phosphate-buffered saline followed by centrifugation of cellular debris at 10,000 x g for 5 min. The relative amounts of plasminogen activators prepared from S. uberis broth cultures and the recombinant equivalents from E. coli clones were determined by SDS-PAGE and found to be of comparable concentration. Ten microliters of plasminogen activator preparation or equivalent control sample was incubated with 6 µl of human, rabbit, porcine, ovine, equine, or bovine plasminogen (Sigma, 1 U/ml) at 37°C for 1 h. Caprine plasminogen purified from goat serum (Harlan Sera-Lab Ltd. Loughborough, United Kingdom) at 0.75 mg/ml was kindly donated by Abu-Bakr Abu-Median (Institute for Animal Health, Compton, United Kingdom). A similar volume (6 µl) containing 4.5 µg of caprine plasminogen was incubated with the various plasminogen activator preparations. Following incubation, 15 µl of each sample was introduced into wells cut into 1% agarose gel made with phosphate-buffered saline and 1% Oxoid skim milk and incubated for up to 24 h at 37°C. Zones of clearance due to proteolytic cleavage of milk proteins were recorded photographically at suitable intervals as described above.
Nucleotide sequence accession number. The nucleotide sequence for the region of S. uberis pauB in strain SK880 has been submitted to the EMBL nucleotide database under accession number AJ314852.
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Zymographic analysis of S. uberis SK880.
Concentrated cell-free culture supernatant from broth cultures of S. uberis SK880 was shown to generate zones of proteolytic clearance in agarose overlay containing bovine plasminogen and skim milk (Fig. 1). This activity was demonstrated to be plasminogen specific through an absence of proteolysis when bovine plasminogen was omitted from the overlay (data not shown). Comparisons of mobility in SDS-PAGE and subsequent zymography confirmed the unusually high molecular mass of the plasminogen activator from S. uberis SK880 (43 to 45 kDa), in agreement with the previously reported estimate of approximately 45 kDa (14). In addition, zymographic analysis showed that S. uberis SK880 lacked a plasminogen activator of a size corresponding to that of PauA (
30 kDa).
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FIG. 1. Zymographic analysis of culture supernatants from S. uberis 0140J and SK880. Zones of proteolysis due to activated bovine plasmin are shown in a skim milk-agarose overlay.
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FIG. 2. Amplification products from the hexA-orf1 locus of S. uberis. Lane 1, S. uberis 0140J; lane 2, S. uberis SK880.
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FIG. 3. Schematic representation of pauA in S. uberis 0140J (A) and pauB in S. uberis SK880 (B). Open arrows represent the orientation of plasminogen activator and flanking genes. Filled arrowheads indicate the orientation of putative ORFs. Partial and horizontal arrows indicate oligonucleotide primer locations (Table 1).
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The GC contents of the 2.1-kbp amplification product from S. uberis SK880 and the corresponding 1.1-kbp product from S. uberis 0140J were both calculated to be 33.1%. No evidence of homology to bacteriophage-like elements or inverted and direct repeat sequences suggestive of transposon insertion was found at either end of the 2.1-kbp segment of S. uberis SK880 DNA.
Confirmation of N-terminal processing of PauB. Preparations of native PauB isolated from cell-free culture supernatant were subjected to N-terminal sequence analysis to confirm the point where cleavage of the putative leader peptide occurred. Three determinations were made due to the presence of additional contaminating proteins in the samples. The first eight residues of the PauB sequence were clearly identified and confirmed the predicted cleavage point between Ala25 and Ile26, yielding a mature protein commencing at the NH2 end with Ile, Thr, Ser, Lys, Glu, Val, Asn, Tyr.
Expression cloning of the mature pauB gene. Genomic DNA encoding mature PauB commencing at Ile26 was amplified from S. uberis SK880. The mature pauB coding sequence was cloned into the expression vector pCAL-n-FLAG (Stratagene) and introduced into a suitable E. coli host strain. Expression of a functional fusion protein comprising a calmodulin-binding moiety linked to the N terminus of the mature PauB molecule was verified by microtiter tray assay using clarified cell lysates, bovine plasminogen (Sigma), and plasmin-specific chromogenic substrate H-D-Val-Leu-Lys-pNA as described previously (15).
Specificity profiling of PauB. The abilities of preparations of PauB isolated from S. uberis SK880 culture supernatant and recombinant PauB (rPauB) to activate a variety of mammalian plasminogens were determined alongside those of PauA and SK (Fig. 4). PauA and PauB preparations from S. uberis 0140J and SK880, respectively, activated bovine, ovine, and equine plasminogen. Native and recombinant PauB were able to activate caprine plasminogen. The recombinant form of PauA also appeared to activate caprine plasminogen, whereas native PauA did not. Both native and recombinant PauA were unable to activate porcine, rabbit, and human plasminogen. Surprisingly, both native and recombinant preparations of PauB were shown to activate porcine, rabbit, and human plasminogen.
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FIG. 4. Specificity profiles of native and recombinant plasminogen activators from S. uberis. Wells were cut in phosphate-buffered saline-agarose containing 1% skim milk. To these were added preincubated mixtures of plasminogen activator preparations such as WT PauA and WT PauB, wild-type plasminogen activators from culture supernatants of S. uberis 0140J and SK880, respectively; rPauA and rPauB, cleared whole-cell lysates from recombinant clones of PauA and PauB, respectively; SK(a), culture supernatant containing streptokinase from Group A streptococcus strain 0358) or a control recombinant lysate (rKan, encoding a kanamycin resistance gene) with mammalian plasminogen preparations designated as follows: H, human; R, rabbit; P, porcine; C, caprine; O, ovine; E, equine; B, bovine or a buffered saline control (pbs).
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PauB represents a second plasminogen activator identified from S. uberis. Homology scores derived from pairwise amino acid sequence alignments of mature plasminogen activators clearly illustrate the sequence diversity displayed by this expanding group of bacterial proteins (Table 2). The level of homology shown by PauB to other bacterial plasminogen activators may reflect the functional requirements of these molecules, namely, specific interaction with plasminogen leading to the formation of an activator complex. There is, however, little evidence from sequence analysis to suggest an evolutionary link between PauB and any of the other bacterial plasminogen activators.
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TABLE 2. Pairwise homology scoresa of streptococcal and staphylococcal bacterial plasminogen activators
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TABLE 3. Alignment of the extreme N termini of host-activated plasminogen and mature bacterial plasminogen activators
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In the course of cloning the pauB gene from S. uberis SK880 it became apparent that this novel plasminogen activator occupied a locus normally filled by pauA. This finding clearly explained why no caseinolytic activity due to PauA was apparent on zymographic analysis; however, it did raise questions as to the origin and significance of the presence of pauB in this locus. The pauB gene was flanked by sequence homologous to a regulatory element from an oral streptococcus of the mutans group; however, no evidence to suggest horizontal transmission was identified. On the basis of the high level of sequence conservation observed for PauA (31) and its flanking sequences, it is tempting to speculate that this locus has served as a repository for determinants essential to the pathogenesis of S. uberis.
Evidence of pauB was not found in S. uberis isolated from the United Kingdom dairy herd. The occurrence of pauB in Danish isolates was reported once from a screen of 11 strains tested (14). A further investigation in this study found no further evidence of pauB in isolates from 20 different Danish herds. If the distribution of pauB within S. uberis is as low as these studies have suggested, the possibility that the acquisition of pauB by SK880 occurred recently is raised. Conversely, it could be argued that there was little advantage to be gained by S. uberis expressing PauB rather than PauA, thus limiting the spread of a low-abundance determinant. The finding of bovine plasminogen activators in the overwhelming majority of S. uberis isolates tested does suggest a role for these molecules in the pathogenesis of the bacterium. It remains to be seen whether the abundance of PauB increases within S. uberis or whether indeed it is identified in other streptococci, resulting from the absence of species specificity displayed by PauB.
We acknowledge funding from the Ministry of Agriculture, Fisheries and Food.
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