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Journal of Bacteriology, June 2002, p. 3203-3213, Vol. 184, No. 12
0021-9193/02/$04.00+0 DOI: 10.1128/JB.184.12.3203-3213.2002
Copyright © 2002, American Society for Microbiology. All Rights Reserved.
Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, California 94305,1 Departments of Microbiology and Medicine, University of Washington, Seattle, Washington 981952
Received 29 January 2002/ Accepted 25 March 2002
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Gram-negative bacteria frequently utilize two-component systems consisting of a sensor kinase and a DNA binding component to sense and respond to a variety of conditions, including changes in pH, ion concentration, and osmolarity. The survival of Salmonella in different host environments requires coordinate regulation of many gene products in response to these changing environmental conditions. The PhoQ sensor kinase responds to changes in the concentration of Mg2+ ions and phosphorylates its cognate response regulator PhoP in environments containing micromolar concentrations of Mg2+ (10, 41). PhoP in turn activates a number of genes, including those necessary for intracellular survival and antimicrobial peptide resistance (8, 31).
Antimicrobial peptides are an essential aspect of host innate immune defense and are produced by macrophages, neutrophils, and mucosal epithelial cells (18). These peptides are small (2 to 4 kDa) cationic molecules of various structural classes that bind to and permeabilize bacterial membranes. Within host tissues, Salmonella is likely to encounter antimicrobial peptides in the intestine, where Paneth cells constitutively secrete them, as well as within the host cell phagosomes that fuse with antimicrobial peptide-containing vesicles (34, 38). The ability of pathogenic bacteria to resist killing by host antimicrobial peptides present in different host niches may therefore contribute to their virulence.
Salmonella resistance to antimicrobial peptides is frequently mediated by modifications to the lipopolysaccharide (LPS) component of the bacterial outer membrane. Complete LPS consists of an endotoxic component, lipid A, which is linked to a polysaccharide molecule consisting of a core oligosaccharide and a repeating sugar structure known as the O antigen (35). Environmentally induced modifications to the structure of lipid A are correlated with resistance to several classes of antimicrobial peptides. For example, substitution of the 4' phosphate with 4-aminoarabinose has been shown to be important for resistance to the antimicrobial peptide polymyxin B (PB) (13). Recently, it has been demonstrated that both 4' and 1 phosphates can be substituted with aminoarabinose (47), although substitution at the 4' phosphate is what has been correlated with resistance. PB is an amphipathic cationic molecule that binds to LPS and permeabilizes the outer and inner membranes of gram-negative bacteria by a mechanism thought to be similar to that of antimicrobial peptides (44, 49). Thus, resistance to PB often confers cross-resistance to some classes of mammalian antimicrobial peptides in vitro (39) and correlates with increased survival of Salmonella in neutrophils (43).
4-Aminoarabinose addition to lipid A and the addition of ethanolamine are controlled by a second two-component regulatory system encoded by pmrAB (13). The response regulator PmrA is regulated indirectly by PhoP through the PmrD protein (26). In addition, the PhoP-PhoQ system coordinately regulates several other unlinked loci involved in different LPS modifications that confer resistance to a number of structurally unrelated antimicrobial peptides (16, 17). Therefore, phoP mutants of Salmonella are highly sensitive to multiple classes of antimicrobial peptides due to an inability to generate several modified forms of LPS. In addition to LPS modifications, changes in expression of outer membrane proteins also play a role in conferring resistance to antimicrobial peptides. For example, the outer membrane protease PgtE has been shown to cleave alpha-helical antimicrobial peptides and is also regulated by the PhoP-PhoQ system (12). Furthermore, the rck gene found on the S. enterica serovar Typhimurium virulence plasmid encodes an outer membrane protein that confers increased resistance to complement killing when overexpressed in Escherichia coli (19). A recent screen in our laboratory for genes that can restore PB resistance to the mig-14 mutant identified rck (unpublished data). Although rck is not known to be regulated by PhoP, it is coexpressed in vitro with Salmonella genes that are induced within the macrophage vacuole (C. Detweiler and S. Falkow, unpublished data).
We examined the regulation and function of the Salmonella gene mig-14, which is dependent on PhoP for transcriptional activation within cultured macrophages (53) and contributes to oral virulence in mice (51). We demonstrate here that the mig-14 promoter is activated in minimal medium containing limiting concentrations of magnesium, low pH, or antimicrobial cationic peptides. The mig-14 promoter is upregulated in response to PB in a phoP-independent manner, suggesting the existence of additional regulators of mig-14. The mig-14 strain shows increased sensitivity to the antimicrobial peptides PB and protegrin-1 (PG-1), indicating that regulation of mig-14 by these peptides is functionally important. Analysis of mig-14 lipid A by matrix-assisted laser desorption ionization-time of flight (MALDI-TOF) and crude LPS preparations by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) showed no differences from the isogenic wild-type strain. Therefore, the mechanism by which Mig-14 contributes to antimicrobial peptide resistance remains to be elucidated.
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TABLE 1. Bacterial strains and plasmids used in this study
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PG-1 sensitivity assay. Bacterial strains were grown as described above for the PB sensitivity assay. After the 3-h growth period, 5 x 104 to 1 x 105 bacteria per ml were added to 96-well plates containing 200 µl of LB with the appropriate concentration of peptide. Each 96-well plate was placed at 37°C on a platform shaker and gently agitated for 1 h. Each strain and peptide concentration was tested in triplicate. Appropriate dilutions were made in PBS and plated for CFU. Percent survival was calculated relative to bacteria treated in the absence of peptide.
Lipid A purification and MALDI-TOF analysis. Strains were grown overnight in the indicated medium, and LPS was purified by the Mg2+-ethanol precipitation method as previously described (4). Lipid A was purified by hydrolysis in 1% SDS at pH 4.5 (3). Before being applied on a sample plate, the lyophilized lipid A was dissolved in 5 µl of 5-chloro-2-mercaptobenzothiazole MALDI matrix in chloroform-methanol (1:1). Negative-ion MALDI-TOF was performed as described previously (6).
Construction of pmrD reporter plasmids. The promoter regions of pmrD (290 bases upstream of the start ATG) and pmrC (208 bases upstream of the start ATG) were amplified in a Stratagene RoboCycler with PCRSupermix (Gibco BRL) and standard PCR conditions. The primers used for pmrD were pmrD5', GCGAATTCAGTTTGGTC-ATCGTCCCGTTG, and pmrD3', GCGGATCCGTTTCACGCTGATTGTTCATAAC. The primers used for pmrC were pmrC5', GCGAATTCTCGAATTCGATCACCGCGCTG, and pmrC3', GCGGATCCGACTTCGGTGACGCTAATCGTG. The PCR products were cloned into the EcoRI-BamHI sites of the green fluorescent protein (GFP) reporter plasmid pFPV25 (52) to generate ppmrD::GFP and ppmrC::GFP.
Fluorescence-activated cell sorter-based analysis of promoter activity. Bacterial strains harboring reporter constructs were grown overnight in N minimal medium, pH 7.4, plus 10 mM MgCl2, harvested, washed in N minimal medium, pH 7.4, without MgCl2, and diluted 1:100 into minimal medium, pH 7.4, plus 10 mM MgCl2. Mid-log-phase bacteria (optical density at 600 nm, 0.5 to 0.6) were then inoculated into the indicated media and grown for 3 h to allow expression of GFP. Bacteria were diluted into PBS and analyzed by flow cytometry with a Becton Dickinson FACSCalibur and CellQuest acquisition and analysis software as previously described (52).
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Transcription from the mig-14 promoter was induced approximately 10-fold more in 10 µM MgCl2 than in 10 mM MgCl2 (Fig. 1A and Table 2). The pmrC and pmrD promoters were similarly induced in this low-magnesium medium. These data indicate that, like other PhoP-activated genes, mig-14 is induced by low concentrations of Mg2+. Also like other PhoP-activated genes, mig-14 promoter activity was constitutively induced to high levels in a strain containing constitutively activated PhoP even in medium with 10 mM MgCl2 (data not shown).
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FIG. 1. Fluorescence-activated cell-sorter analysis of wild-type (SL1344) S. enterica serovar Typhimurium harboring GFP reporter constructs (indicated at the top) grown in various conditions (listed on the right). The light histograms represent bacteria grown in N minimal medium, pH 7.4, and 10 mM MgCl2; the bold histograms represent bacteria grown in identical N minimal medium with additions or modifications as indicated. The activity of all three promoters is significantly induced by low Mg2+ and by antimicrobial peptides. (A) Induction by low Mg, low pH, and cationic antimicrobial peptides. (B) Induction by membrane-active detergents.
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TABLE 2. Fold induction of promoter activity in indicated medium conditiona
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mig-14 is induced by antimicrobial peptides. Recent work has demonstrated that PhoP activates a number of genes, including the two-component response regulator encoded by pmrA, that are important in Salmonella resistance to PB and some mammalian antimicrobial peptides (13). It is likely that Salmonella encounters antimicrobial peptides within host microenvironments during in vivo infection. These peptides may contribute to environmental signals that trigger changes in bacterial gene expression. We therefore examined the cationic peptides PB, protamine, and PG-1 to determine whether any or all of these could stimulate mig-14 gene expression. Protamine is a polycationic molecule present in sperm nuclei, and PG-1 is a mammalian antimicrobial peptide originally isolated from porcine leukocytes (25). In all cases, we observed that expression of GFP from the mig-14 reporter fusion was significantly higher in medium containing antimicrobial peptide than in medium without peptide. Similarly, the pmrC and pmrD reporters were also induced in media containing these antimicrobial peptides (Fig. 1A and Table 2). PB induced the greatest level of expression in all cases, with the pmrC promoter exhibiting the highest overall levels of induction. Expression of the phoP-independent gene rpsM was unaltered in all of the above conditions, demonstrating that these conditions specifically induce the expression of genes that are PhoP regulated (data not shown).
Exposure of bacteria to high concentrations of cationic peptides in most cases results in membrane damage and bacterial death. We therefore examined the membrane-active detergents Triton X-100 and SDS to determine whether exposure to membrane-damaging agents per se would induce expression of the mig-14 and pmr GFP reporters. In contrast to both pmrC and pmrD, mig-14 was only slightly induced by these detergents (Fig. 1B and Table 2). Interestingly, pmrC was markedly induced in the presence of SDS. phoP was required for the induction of these reporters in Triton X-100 and SDS, as this activation was not observed in the phoP::Tn10 mutant (Fig. 2B). However, we found that induction of the reporter fusions by these detergents was only observed in log-phase-grown bacteria. The nondetergent conditions induced expression of all three reporters regardless of the growth phase (data not shown). This is consistent with previous results that PhoP-regulated genes do not play a role in resistance to killing by Triton X-100 or SDS (54). These data suggest that in addition to pmrA, pmrD, and other PhoP-regulated genes, mig-14 may play a role in adaptive responses to membrane perturbations caused specifically by antimicrobial peptides.
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FIG. 2. The phoP::Tn10 strain was used for the analysis described in the legend to Fig. 1. phoP is required for activation of all promoters by all conditions except for that of pmrC by low pH and mig-14 and pmrD by PB.
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pmrA is not required for regulation of mig-14. It has been demonstrated that a subset of PhoP-regulated genes is directly controlled by an alternate two-component regulatory system encoded by pmrAB. We therefore examined the transcriptional responses of the mig-14, pmrC, and pmrD reporter fusions in a pmrA::Kan strain background. We found that induction of mig-14 and pmrD still occurred, in contrast to the pmrC reporter, which was no longer induced under any of the conditions tested (Fig. 3A). PmrB has been shown to sense both iron and pH, and it activates PmrA in response to high iron (56). We did not see induction of mig-14 in the presence of iron, confirming that mig-14 is not regulated directly by PmrA-PmrB (data not shown). However, in the case of the mig-14 reporter, expression levels in low Mg2+ and PB were significantly higher in the pmrA::Kan strain than in the wild type (Table 2). Furthermore, uninduced levels of pmrD were approximately twofold higher than in the wild-type strain. These data suggest that although pmrA is not required for induction of mig-14 or pmrD, it may be involved in feedback regulation.
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FIG. 3. The pmrA::Kan strain was used for the analysis described in the legend to Fig. 1. pmrA is required for the activation of the pmrC promoter but not of the pmrD or mig-14 promoters.
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FIG. 4. Survival of S. enterica serovar Typhimurium strains after a 1-h PB challenge. Bacterial strains were exposed to 2.5 µg of PB/ml in LB for 1 h after being grown in the following N minimal media: 10 µM MgCl2, pH 5.8 (dark grey bars); 10 mM MgCl2, pH 5.8 (white bars); 10 µM MgCl2, pH 7.4 (lined bars); and 10 mM MgCl2, pH 7.4 (light grey bars). WT refers to the SL1344 strain. Data are expressed relative to the input bacterial CFU. For ease of analysis, Mg2+ and pH conditions are indicated below the corresponding bars. For Mg2+, a plus sign refers to 10 mM and a minus sign refers to 10 µM MgCl2. For pH, a plus sign indicates pH 7.4 and a minus sign indicates pH 5.8. The mig-14::Kan strain is 10- to 20-fold more sensitive to polymyxin than the corresponding wild-type strain. The survival of the phoP::Tn10 strain was less than 1% for all conditions. Experiments were performed at least three times in triplicate, and the data presented are from a representative experiment.
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FIG. 5. Survival of S. enterica serovar Typhimurium strains overexpressing pmrD after a 1-h PB challenge. Data are expressed relative to identical strains grown without PB for 1 h. Dark grey bars, 10 µM MgCl2, pH 5.8; white bars, 10 mM MgCl2, pH 5.8; lined bars, 10 µM MgCl2, pH 7.4; light grey bars, 10 mM MgCl2, pH 7.4. Bacterial strains harboring the pmrD-expressing plasmid pKR301 were treated as described in Materials and Methods. Overexpression of pmrD restored PB resistance to the mig-14::Kan strain but not to the pmrA::Kan mutant.
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FIG. 6. MALDI-TOF mass spectra of purified lipid A from wild-type (SL1344) and mig-14::Kan (mig14) strains. Strains were grown in N minimal medium containing either 1 mM (A and C) or 8 µM (B and D) MgCl2. The growth of both strains in 1 mM MgCl2 shows the expected peaks at an m/z of 2,036 (hepta-acylated wild-type LPS) and at an m/z of 1,797 (hexa-acylated LPS lacking palmitate). Analysis of LPS from the wild-type and mig-14::Kan strains grown in 8 µM MgCl2 yielded peaks at m/z of 2,183 and 1,929, which is consistent with the presence of hepta- and hexa-acylated forms of LPS containing the 4-aminoarabinose modification (B and D).
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mig-14 is necessary for resistance to mammalian peptide PG-1. Sensitivity of Salmonella to PB has been shown to correlate with sensitivity to mammalian antimicrobial peptides. This finding has significant consequences for the infection process of this pathogen, as it encounters various antimicrobial peptides throughout the process of colonization within its host. It was recently demonstrated that strains of Proteus mirabilis selected for PB sensitivity also had increased sensitivity to PG-1 as well as defects in LPS structure (28). We therefore examined the sensitivity of wild-type, mig-14::Kan, and phoP::Tn10 strains to a panel of PG-1 concentrations. We observed a marked loss of resistance to PG-1 in the phoP mutant strain and saw intermediate levels of sensitivity to PG-1 in the mig-14 mutant (Fig. 7). While not as dramatic as that of the phoP strain, the sensitivity of the mig-14 mutant was nonetheless significantly lower than that of the isogenic wild-type strain, even at the lowest peptide concentration examined. The results were similar whether bacteria were grown in low Mg2+ alone or both in low Mg2+ and at low pH (data not shown). These results indicate that mig-14 is regulated by antimicrobial peptides and low-Mg2+ conditions that are likely to be present in some host microenvironments, and they suggest a functional link between this regulation and a role for mig-14 in resistance of S. enterica serovar Typhimurium to antimicrobial peptides.
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FIG. 7. Sensitivity of S. enterica serovar Typhimurium strains to PG-1. Wild-type ( ), mig-14::Kan ( ), and phoP::Tn10 ( ) strains were grown overnight as described, washed, diluted in N minimal medium, pH 7.4, and 10 µM MgCl2, and grown for 3 h prior to being inoculated into LB containing the indicated concentrations of PG-1. The experiment was performed 3 times in triplicate, and the data shown are from a representative experiment. Data are expressed relative to bacteria treated without PG-1. mig-14::Kan is markedly attenuated in its ability to survive PG-1 treatment compared to the wild type, although not as drastically as phoP::Tn10.
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The upregulation of mig-14::GFP and pmrD::GFP by PB showed a phoP-independent component as induction occurred even in the absence of an intact PhoP-PhoQ system. This observation suggests that other regulatory systems may activate mig-14, and perhaps other antimicrobial peptide resistance genes, directly in response to the presence of antimicrobial peptides. We further demonstrate that in addition to being induced by antimicrobial peptides, mig-14 is also required for bacterial resistance to killing by PB and PG-1.
The results of our PB resistance assays indicated that growth of bacteria in low Mg2+ was the strongest signal to induce PB-resistant adaptations, as we did not see significant resistance in bacteria grown at pH 5.8 in high Mg2+ (Fig. 4). This is in contrast to the results of Groisman et al. (11), who observed significant levels of resistance in pH 5.8 medium alone. The reasons for these differences are not fully understood, but one possible explanation is that there are subtle strain-specific differences in response to low-pH conditions. It is possible that these conditions did not produce optimal induction of the pH-responsive PmrA-PmrB system in our strain, resulting in reduced resistance. This is supported by the regulation studies, where we observed significantly higher levels of induction by Mg2+ than by low pH, even of the pmrC::GFP reporter, suggesting that we may not have achieved maximal induction of the pmrAB regulon. In the complementation experiments overexpressing pmrD, we did in fact observe significant levels of resistance in pH 5.8 medium alone. Regardless of the reasons for this subtle difference, the mig-14::Kan strain showed attenuated resistance to antimicrobial peptides in comparison to the wild type in all of our assays. Together, our data suggest that mig-14 participates with other PhoP-regulated genes in the adaptive responses of Salmonella to environmental conditions that include magnesium depletion and damage by cationic peptides.
PhoP and PhoQ comprise a two-component system that regulates a large number of genes in S. enterica serovar Typhimurium in response to a variety of nutrient starvation conditions (24). It has been appreciated for a number of years that the phoPQ regulon is necessary for Salmonella replication in macrophages and virulence in mouse models of infection (8, 29). Investigators also demonstrated that phoP-null mutants were attenuated in resistance to a number of antimicrobial peptides (7, 31). More recently, it has become clear that one of the functions of PhoP-regulated genes is to remodel the bacterial envelope in response to changing environmental conditions. This remodeling occurs both at the level of outer membrane protein expression (12, 30) and at the level of structural modifications of LPS (16). Both phoP mutants that are fixed in the constitutively active state and phoP-null mutants are unable to remodel the outer membrane in response to environmental signals and are avirulent in animal infections (30), suggesting that this remodeling is crucial for survival within the host environment.
A consensus PhoP binding site has been identified in E. coli by using the promoters of the genes mgtA and mgrB (23). We were not able to identify this consensus sequence in the promoter region of mig-14, suggesting that PhoP could regulate mig-14 indirectly. A number of PhoP-regulated genes, several of which are regulated indirectly through a second two-component system, PmrA-PmrB (14, 42) also lack this consensus sequence (41). PhoP activates PmrA via PmrD, which is thought to posttranscriptionally activate PmrA (26). Our results indicated that mig-14 is not regulated by PmrA-PmrB (Fig. 3). This suggests either that PhoP directly regulates mig-14 and binds to the mig-14 promoter at an uncharacterized binding site or that mig-14 may be regulated by as-yet-unidentified upstream regulatory genes. The induction of mig-14 by PB in a phoP background indicates that it is likely that there are other regulators of mig-14.
The PhoP-PhoQ and PmrA-PmrB regulatory systems participate in activating the transcription of gene products that generate several different modified forms of LPS. Substitution of lipid A with 4-aminoarabinose at one of the two phosphate groups is directly controlled by PmrA-PmrB and is an important mechanism of resistance to PB and several other antimicrobial peptides. Our data indicate that mig-14 is not required for the addition of 4-aminoarabinose to lipid A. Furthermore, we observed no changes in global LPS profiles of mig-14 bacteria by SDS-PAGE and silver staining (data not shown). This suggests that another mechanism is responsible for the contribution of the Mig-14 protein to antimicrobial resistance. Mig-14 could be involved in the addition of ethanolamine to the LPS core, which has also been shown to correlate with polymyxin resistance (20, 50). However, as ethanolamine addition takes place in E. coli K-12 (33, 57), which does not possess mig-14 (51), it is at least the case that ethanolamine addition can take place in the absence of mig-14 function.
While mig-14 is not necessary for colonization of the Peyer's patches, it plays a role in colonization of the spleen and liver following oral inoculation in a mouse model of typhoid (51). This observation and our results that mig-14 strains are more sensitive to antimicrobial peptides are consistent with the findings of Gunn et al., who demonstrate that certain polymyxin-sensitive mutants of Salmonella were strongly out-competed in replication by the wild-type strain in the liver and spleen following oral infection (15). The reduced virulence of the mig-14::Kan mutant is therefore consistent with the idea that the Mig-14 protein is necessary for resistance to killing by antimicrobial peptides within the host environment and contributes to Salmonella survival during in vivo infection. The sensitivity of the mig-14 strain to antimicrobial peptides could account for the attenuation of its virulence in mice following oral infection.
The precise role of Mig-14 in conferring protection from antimicrobial peptides is as yet unknown. However, our data suggest that mig-14 is likely to contribute to antimicrobial peptide resistance via a mechanism other than direct modification of LPS. A sequence present in Mig-14 shares homology with the helix-loop-helix motif of the AraC family of transcriptional regulatory proteins, suggesting that it could be a regulatory protein. Interestingly, a large number of AraC family members are involved in antibiotic resistance, stress response, and carbohydrate metabolism (9). We are pursuing further studies to establish the precise function of the Mig-14 protein and determine the mechanism by which it contributes to antimicrobial peptide resistance.
This work was supported by grant AI26195 from the National Institutes of Health to S.F., grant RO1 AI30479 to R.K.E. and S.I.M., and Molecular Basis of Host Parasite Interaction training grant 5 T32 AI07328 to I.E.B.
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