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Journal of Bacteriology, June 2002, p. 3214-3223, Vol. 184, No. 12
0021-9193/02/$04.00+0 DOI: 10.1128/JB.184.12.3214-3223.2002
Copyright © 2002, American Society for Microbiology. All Rights Reserved.
Marie-Noëlle Marenne,1,2 Gautier Detry,1,2 and Guy R. Cornelis1,2,3*
Christian de Duve Institute of Cellular Pathology,,1 Faculté de Médecine, Université de Louvain, B-1200 Brussels, Belgium,2 Molekulare Mikrobiologie, Biozentrum der Universität Basel, CH-4056 Basel, Switzerland3
Received 26 March 2001/ Accepted 13 March 2002
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Y. enterocolitica organisms are peritrichously flagellated bacteria that are motile only when the temperature is below 30°C, so that once again, temperature is a key environmental factor for the Yersinia lifestyle. With regard to motility, the temperature-sensitive regulation of various flagellar genes has been reported even if it is still not fully understood (17, 18). The well-characterized regulation of flagellum biosynthesis in Escherichia coli and Salmonella enterica serovar Typhimurium is subjected to hierarchy, allowing sequential gene expression (25). At the top of the hierarchy is the master operon, composed of the genes flhD and flhC. FlhD and FlhC together form a heterotetrameric transcriptional activator that binds to class II operons (23) and is required for the expression of all other flagellar genes (1). The second level of hierarchy includes genes necessary for the early assembly of the flagellum and a flagellum-specific
factor, fliA, required for the transcription of level III genes. Class III includes genes for late morphogenesis, motor rotation, and chemotactic signaling. Although there is actually no direct evidence, it is believed that Y. enterocolitica has a flagellar regulatory cascade that is similar to that of E. coli and Salmonella serovar Typhimurium.
Several Ysc proteins that are required for Yop secretion display homology with flagellar proteins. Structural similarities between type III secretion apparatuses and flagella were reported for Salmonella SPI-1 (19) and the Shigella needle-like structure (4, 38). Given that the Y. enterocolitica type III structure and flagellum are related and subjected to alternative expression, there could be a link between the expression of both structures. Since
28 is not required for transcription of the ysc and yop genes (15), we tested here the effect of silencing the master operon on Yop secretion.
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pir+, constructed by Miller and Mekalanos (28), was used to deliver the mobilizable plasmids in Y. enterocolitica. |
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TABLE 1. Strains and plasmids used in this study
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Mobility assay. A 10-µl portion of an overnight culture was inoculated onto semisolid plates (0.3% agar). The capacity of each strain to spread beyond the inoculation point was monitored after 16 h at 28°C.
Molecular cloning and mutagenesis. To inactivate flhDC genes, we replaced the central part of the operon with a kanamycin resistance cassette. The flhDC locus was amplified from the chromosome of MRS40(pYV40) by PCR with oligonucleotides MIPA 617 (5'-CCGGAATTCATGTATAAAATGAGTACG-3') and MIPA 618 (5'-AATAAGCTTTCAAACTGCGCGTCTAA-3'), which were designed to include the ATG of flhD and the stop codon of flhC. The PCR product was cloned in the direction opposite that of plac in pBluescript KS(-) digested with SmaI, giving pSBY6. The insert of pSBY6 was sequenced. A StyI deletion that eliminates the last 219 bp of flhD and the first 359 bp of flhC was generated, giving pSBY7. The kan gene was amplified with MIPA 609 (5'-GTGTGATATCAGGGCGCAAGGGCTGCTAAA-3'), MIPA 610 (5'-GCGCGATATCAATTCAGAAGAACTCGTCAA-3'), and pPW107 as a template (P. Wattiau and G. R. Cornelis, unpublished data) and ligated to pSBY7 digested with StyI and blunted with the Klenow fragment of polymerase, giving pSBY9. The 1.3-kb insert of pSBY9 digested with SalI and XbaI was cloned in the corresponding sites of suicide plasmid pKNG101 to give pSBY10. The mutated allele was then introduced into Y. enterocolitica MRS40(pYV40), KNG22703(pSW2276), or MRS40(pAB4052) by allelic exchange as described by Kaniga et al. (16). The mutation was then confirmed by PCR.
SDS-PAGE analysis of proteins and immunoblotting. Yop proteins (Yops) were precipitated from culture supernatants by overnight precipitation with trichloroacetic acid (final concentration, 10% [wt/vol]), washed with acetone, and resuspended in Laemmli buffer (20) at various concentrations (see figure legends). Electrophoresis in 12% (wt/vol) polyacrylamide gels (polyacrylamide gel electrophoresis [PAGE]) in the presence of sodium dodecyl sulfate (SDS) was performed as described by Laemmli (20). After electrophoresis, proteins were either stained with Coomassie brillant blue or transferred by electroblotting to a nitrocellulose membrane. Immunoblotting was carried out by using antiflagellin polyclonal antibodies (gifts from G. Wauters), anti-YscJ (MIPA 66; this work), anti-YopN (MIPA 48), anti-YopE (MIPA 25), anti-VirF (MIPA 29), anti-PhoE (gift from J. Tommassen), or anti-YopB monoclonal antibody (9B7). Secondary antibodies conjugated to horseradish peroxidase (Dako) were detected with Supersignal chemiluminescence substrate (Pierce).
Preparation of polyclonal antibodies against YscJ. Polyclonal anti-YscJ antibodies were raised against a fusion of glutathione S-transferase (GST) with YscJ. The coding region for the hydrophilic periplasmic domain of YscJ (Leu23 to Ser214) was amplified from plasmid pYV40 by PCR with oligonucleotides MIPA 608 (5'-CGGAATTCTTTATACCGGAATTAGT-3') and MIPA 607 (5'-TTAAAGCTTATGACTCTTCACTCACTTG-3'), MIPA 608 creating an EcoRI site and MIPA 607 creating a HindIII site (underlined). The PCR product digested with EcoRI and HindIII was cloned in pGEX-KG (Pharmacia Biotech) in the corresponding sites to generate a translational fusion with GST (pSBY5). The hybrid GST fusion was produced and purified basically as described by Smith and Johnson (37) and Pharmacia Biotech. An 800-µg portion of the purified fusion protein was used to immunize a rabbit.
RNA extraction and Northern blot analysis. Total RNA of Y. enterocolitica was extracted as described by Lambert de Rouvroit et al. (21). This was done after 4 h of growth at RT or 2 h at RT and 2 h at 37°C. Electrophoresis and transfer were done as described by Cornelis et al. (5), and hybridization was done with yop gene DNA by using DIG High Prime labeling and detection starter kit II (Boehringer Mannheim).
Chloramphenicol acetyltransferase assay. Chloramphenicol acetyltransferase was assayed by the spectrophotometric method of Shaw (34).
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FIG. 1. Motility phenotype of the flhDC mutant. (A) Motility assay with a BHI-Ox semisolid plate inoculated with Y. enterocolitica MRS40(pYV40) (wild type [WT]), SBY40(pYV40) (flhDC), and MI1024(pYV1024) (fliA). (B) Western blot analysis with antiflagellin polyclonal antibodies of proteins from whole-cell extracts (C) or from culture supernatants (SN) of Y. enterocolitica MRS40(pYV40) (WT) or SBY40(pYV40) (flhDC) grown for 6 h at RT in BHI-Ox. Lanes were loaded with 8 x 108 bacteria or the supernatant from 10 x 1010 bacteria. The three Y. enterocolitica flagellins are indicated on the left.
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FIG. 2. Yop and flagellin secretion by flhDC mutant bacteria and by bacteria overexpressing flhDC. (A) SDS-PAGE and Coomassie brilliant blue staining of proteins from the supernatants of Ca2+-deprived cultures of Y. enterocolitica MRS40(pYV40) (wild type [WT]) (lanes 1 and 5), SBY22703(pSW2276) (yscN flhDC) (lanes 2 and 6), SBY40(pYV40) (flhDC) (lanes 3 and 7), and SBY40(pYV40) with a compensatory mutation (flhDC*) (lanes 4 and 8) after 2 h at RT and 4 h at 37°C (lanes 1 to 4) or 6 h at RT (lanes 5 to 8). The number of bacteria corresponding to the volume of supernatant loaded is given below the panels. Lanes 4 and 8 (flhDC*) were separated from the others because they were not from the same gel. (B) Western blot analysis with antiflagellin polyclonal antibodies of proteins from whole-cell extracts (C) or culture supernatants (SN) of Y. enterocolitica MRS40(pYV40) (WT) or SBY40(pYV40) (flhDC) containing pGY10 or MRS40(pYV40) (WT) containing pGY10 and grown for 6 h at RT in BHI-Ox. Lanes were loaded with 8 x 108 bacteria or the supernatant from 10 x 109 bacteria. (C) SDS-PAGE and Coomassie brilliant blue staining of proteins from the supernatants of Ca2+-deprived cultures of Y. enterocolitica MRS40(pYV40) (WT), SBY40(pYV40) (flhDC) containing pGY10, and MRS40(pYV40) (WT) containing pGY10 after 2 h at RT and 4 h at 37°C. Lanes were loaded with the supernatant from 8 x 109 bacteria. In panels A and C, the positions of the Yops (YopO, -H, -M, -B, -D, -N, -E, and -Q), LcrV (V), and YscP (P) and of proteins that cannot be detected by Coomassie brilliant blue staining (asterisks) are indicated.
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The study of the expression of the Yop virulon was pursued by semiquantitative Western blot analysis with antibodies directed against various components of the system (Fig. 3 and data not shown). At RT, the flhDC mutant systematically produced more of the proteins tested than wild-type Y. enterocolitica (Fig. 3, compare lanes 1 and 5), the difference being in the range of eightfold. At 37°C, steady-state levels of these proteins were doubled, and the percentage of secretion (secreted proteins/total proteins) was increased about threefold (Fig. 3, compare lanes 3 and 4 and lanes 7 and 8). These results are in agreement with what we found by diluting twice the protein sample of the flhDC mutant for Coomassie brilliant blue staining (Fig. 2A, lanes 1 and 3). Taken together, these data show that in an flhDC background, Yop secretion not only is increased at 37°C but also occurs at RT. We should, however, point out that the very high sensitivity of chemiluminescence examination of immunoblots sometimes allows detection of some Yops in the supernatants of wild-type bacteria grown at RT.
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FIG. 3. Western blot analysis of intra- and extracellular proteins. Shown is immunodetection (anti-YscJ, -YopN, and -YopE polyclonal antibodies or anti-YopB monoclonal antibody) of proteins from whole-cell extracts (C) (lanes 1, 3, 5, and 7) and culture supernatants (SN) (lanes 2, 4, 6, and 8) of Y. enterocolitica MRS40(pYV40) (wild type [WT]) (lanes 1 to 4) or SBY40(pYV40) (flhDC) (lanes 5 to 8) grown for 6 h at RT (lanes 1, 2, 5, and 6) or 2 h at RT and 4 h at 37°C (lanes 3, 4, 7, and 8) in BHI-Ox. The number of bacteria loaded or the number of bacteria corresponding to the volume of supernatant loaded is given below the panels.
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The phenotype of the flhDC mutant was highly unstable. Rapidly, the flhDC mutant became unable to secrete Yops at RT, and secretion at 37°C returned to normal or was even below normal (Fig. 2A, lanes 4 and 8). However, these revertants did not produce flagellins and were not motile (data not shown). Storage at -80°C and preculturing in the presence of Ca2+ did not solve the problem, suggesting that compensatory mutations occurred during the growth phase preceding the experiments. For each experiment, the phenotype of the mutant was therefore checked, and the mutant needed to be reconstructed several times during the course of this work.
Complementation of the flhDC mutation. To complement the flhDC mutation, we used the pGY10 construct of Young et al. (44). This construct contains a 4.3-kb EcoRI fragment of Y. enterocolitica 8081v encoding flhDC. As shown in Fig. 2B, the introduction of pGY10 into the flhDC background restored the secretion of flagellins at RT in BHI-Ox and even led to increased synthesis of flagellins compared to that seen in a wild-type strain. In contrast, Yop secretion at 37°C was decreased to below the level observed with wild-type bacteria (Fig. 2C). Thus, the flhDC clone complemented the flhDC mutation and influenced Yop secretion in the expected way. The introduction of pGY10 into the wild-type background also led to a decrease in Yop secretion at 37°C, concomitant with an increase in flagellin production at RT (Fig. 2B and C). In the culture supernatants of these bacteria, flagellins could be detected even after Coomassie brilliant blue staining of SDS gels, while in the culture supernatants of wild-type bacteria, they could be detected only by immunoblotting (Fig. 2B and data not shown).
Other phenotypes of the flhDC mutant. At 37°C, Y. enterocolitica bacteria tend to agglutinate as a result of the presence of YadA at the bacterial surface (35). The polymeric YadA adhesin, which is encoded by a gene that is also dependent on the transcriptional activator VirF (36), was detected by Coomassie brilliant blue staining and SDS-PAGE in flhDC bacteria at RT and 37°C, while it was detected in wild-type bacteria only at 37°C (Fig. 4A). In good agreement with the appearence of YadA at RT, Y. enterocolitica flhDC mutant bacteria tended to agglutinate at RT (Fig. 4B, upper right panel).
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FIG. 4. Other phenotypes of the flhDC mutant. (A) SDS-PAGE and Coomassie brilliant blue staining of proteins from whole-cell extracts (C) and culture supernatants (SN) of Y. enterocolitica MRS40(pYV40) (wild type [WT]) and SBY40(pYV40) (flhDC) grown for 6 h at RT (RT) or 2 h at RT and 4 h at 37°C (37°C) in BHI-Ox. The number of bacteria loaded or the number of bacteria corresponding to the volume of supernatant loaded is given below the panel. (B) Microscopic views (x40) showing total cultures of Y. enterocolitica MRS40(pYV40) (WT) (left panels) or SBY40(pYV40) (flhDC) (right panels) fixed and stained with crystal violet after 6 h at RT (upper panels) or 2 h at RT and 4 h at 37°C (lower panels) in BHI-Ox. (C) Western blot analysis with anti-PhoE polyclonal antibodies of proteins from whole-cell extracts of Y. enterocolitica MRS40(pYV40) (WT) or SBY40(pYV40) (flhDC) grown for 6 h at RT (RT) or 2 h at RT and 4 h at 37°C (37°C) in BHI-Ox. A total of 8 x 108 bacteria were loaded in each lane.
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VirF is regulated by FlhD and FlhC. One hypothesis was that FlhD, FlhC, or FlhDC may affect directly or indirectly the expression of the transcriptional activator VirF. In order to study the expression of the virF gene, we measured the chloramphenicol acetyltransferase activity governed by a plasmid-borne virF-cat operon fusion in wild-type and flhDC bacteria. virF-cat was expressed to a higher level in flhDC mutant bacteria than in wild-type bacteria both at RT (2.5-fold) and at 37°C (1.8-fold) (Fig. 5A). These values were significantly different, and the difference could even have been underestimated given the high frequency of loss of the phenotype. This effect was also apparent at the protein level (Fig. 5B). Anti-VirF antibodies detected a band of about 60 kDa that was present in wild-type bacteria grown at 37°C but not in virF mutant bacteria. This band, which could correspond to either a dimer of VirF (the monomer is 30 kDa) or VirF associated with another protein, clearly showed increased production in flhDC bacteria grown at 37°C. This band could even be observed from time to time in mutant bacteria grown at RT. We conclude from these two types of experiments that the virF gene is a target of FlhD, FlhC, or FlhDC.
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FIG. 5. Effect of the flhDC mutation on VirF. (A) Chloramphenicol acetyltransferase (CAT) activity was measured in extracts of Y. enterocolitica MRS40 (wild type [WT]) and SBY40 (flhDC) cured of the pYV plasmid and carrying pGC757, which encodes a virF-cat operon fusion. Bacteria were grown for 6 h at RT (RT) or 2 h at RT and 4 h at 37°C (37°C) in BHI-Ox. CAT activity was expressed in arbitrary units per unit of optical density of the bacterial suspension at 600 nm. The values represent the averages obtained from four independent experiments, including the standard deviations between the measurements. (B) Western blot analysis with anti-VirF polyclonal antibodies of proteins from whole-cell extracts of Y. enterocolitica MRS40(pYV40) (WT) (lanes 1 and 2), SBY40(pYV40) (flhDC) (lanes 3 and 4), and W22703(pGC1153) (virF) (lanes 5 and 6) grown for 6 h at RT (lanes 1, 3, and 5) or 2 h at RT and 4 h at 37°C (lanes 2, 4, and 6) in BHI-Ox. A total of 8 x 108 bacteria were loaded in each lane.
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FIG. 6. Effect of the flhDC mutation on the transcription of yopE and yopD. Shown is Northern blot analysis of yopE and yopD in Y. enterocolitica MRS40(pYV40) (wild type [WT]) or SBY40(pYV40) (flhDC) grown for 4 h at RT (RT) or 2 h at RT and 2 h at 37°C (37°C). The yopE transcript was detected with a PCR product amplified with oligonucleotides MIPA 538 (5'-GCCCCCATGGAAATATCATCATTTATTTCTACAT-3') and MIPA 539 (5'-CCGGAATTCGCCCCTTGTTTTTATCC-3'), and the yopD transcript was detected with MIPA 829 (5'-CGGGGATCCATGACAATAAATATCAAGACAGAC-3') and MIPA 830 (5'-CGCGTCGACTCAGACAACACCAAAAGC-3').
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FIG. 7. FlhD and FlhC control the synthesis of the Ysc injectisome. Shown is Western blot analysis of YopE in whole-cell extracts (C) (lanes 1, 3, 5, and 7) and supernatants (SN) (lanes 2, 4, 6, and 8) of Y. enterocolitica MRS40(pAB4052) (yopE) (lanes 1, 2, 5, and 6) and SBY40(pAB4052) (yopE flhDC) (lanes 3, 4, 7, and 8) carrying pSI55 (p lac yopE sycE) and grown for 6 h at RT (lanes 1 to 4) or 2 h at RT and 4 h at 37°C (lanes 5 to 8) in BHI-Ox. The number of bacteria loaded or the number of bacteria corresponding to the volume of supernatant loaded is given below the panel.
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The flhDC mutant is the first Yersinia mutant ever described that is able to secrete Yops at RT. However, the mutant was very unstable, and it had to be reconstructed several times during the course of this study. There is no obvious explanation for this instability, since the mutant bacteria secreted Yops at RT only when Ca2+ was depleted from the medium, and they were always propagated in high Ca2+ concentrations. Moreover, Yop secretion at a low temperature was not accompanied by growth restriction. Nevertheless, the phenotype of Yop secretion at RT in the presence of low Ca2+ concentrations is rapidly lost in the presence of compensatory mutations. To understand better this instability, it would be helpful to map where the mutations occur, but this task would not likely be an easy one.
A clear target of the negative regulation by FlhD and/or FlhC or a downstream regulator (see below for more details) is the transcriptional activator VirF, whose expression and steady-state levels were enhanced in the flhDC mutant. The effect on VirF could not explain completely the phenotype of the flhDC mutant because (i) some type III genes have VirF-independent expression (21, 39) and (ii) overproduction of VirF in a wild-type strain at a low temperature does not lead to Yop secretion and thus does not mimic the flhDC mutation phenotype (21). Hence, the negative regulation must also operate directly on the expression of ysc and yop genes. We observed that at 37°C the effect of the flhDC mutation on yop transcription was not as strong as expected with regard to the increase in Yop secretion. Nevertheless, transcription could be detected at a low temperature in the mutant.
The effect of FlhD and/or FlhC on the Yop virulon could be indirect and mediated via the product of a downstream gene in the flagellar regulation cascade. We can eliminate all the class III components that require
28 for expression because Iriarte et al. (15) showed that this sigma factor does not influence ysc and yop gene expression. We also confirmed that the phenotype of the fliA mutant is clearly different from that of the flhDC mutant (data not shown). However, we cannot exclude the possibility that FlhD and/or FlhC act via a class II component. However, this possibility would not be easy to investigate. Indeed, Furness et al. (11) showed for Proteus mirabilis a negative-feedback effect of a class II flagellum export defect on flhDC expression, suggesting that the phenotype of a class II mutant could indirectly correspond to an flhDC mutant phenotype. Moreover, Liu and Matsumura (22) demonstrated that some class II genes can be transcribed via
28 in E. coli. Finally, the sequences of most of the class II genes in Y. enterocolitica are still unknown. However, if the expression of a fliZ homolog is under the control of FlhDC in Y. enterocolitica, FliZ could be responsible for this regulation, as it is in Salmonella (24), but in the other direction.
The master operon was previously shown to be implicated in the regulation of nonflagellar genes: FlhD affects cell division in E. coli (30) and regulates phospholipase expression and secretion in Serratia liquefaciens (13) as well as in Y. enterocolitica (43), and the flhDC operon is also required for the expression of at least two nonflagellar products involved in lipolysis and hemolysis in Xenorhabdus nematophilus (12) and is necessary to initiate host cell invasion by Y. enterocolitica (42). FlhD and FlhC now appear to be involved in the regulation of the Yop virulon in Y. enterocolitica. Thus, not only are FlhD and FlhC flagellar regulators but also their effect is not so broad as to warrant characterizing them as global regulators.
The expression of the E. coli flhDC operon is activated by H-NS (2), which itself responds to a number of physiological and environmental signals. In Shigella and in enteroinvasive E. coli, the same H-NS protein controls the temperature-dependent expression of virulence genes by repressing the in vivo transcription of virF at below 32°C (9). Since histone-like YmoA has been shown to be a negative regulator of the Y. enterocolitica virF gene at a low temperature (7), one may wonder whether it has a stimulatory role in motility. We could not detect any link between YmoA and motility in Y. enterocolitica (data not shown), but this result could be explained as described below.
How can the new data presented here be integrated into the regulation network of Y. enterocolitica? At temperatures below 37°C, the conformation of the pYV plasmid is maintained with a specific architecture involving bends that are thought to be stabilized by the histone-like protein YmoA (32). This configuration keeps the ysc and yop genes in a repressed state. One could hypothesize that an unknown factor (X), responsible for this configuration, could be FlhD and/or FlhC (direct effect) or the product of an FlhDC-regulated gene (indirect effect). One reason to postulate that the X factor acts upstream of YmoA is that ymoA mutants express yop genes at a low temperature but do not secrete Yops at a low temperature (7), but the flhDC mutant does the latter. Exposure to 37°C has an effect on DNA supercoiling and bending which would dislodge the X factor and YmoA, promoting transcription and resulting in subsequent yop induction. In the flhDC mutant, the X factor would be missing, and there would be no topological constraint on the pYV plasmid: transcription could take place at RT. This model links FlhDC to supercoiling and suggests that thermoregulation of motility might also involve changes in DNA topology. In support of this hypothesis is the fact that high osmolarity, another factor known to influence DNA topology, inhibits the motility of Y. enterocolitica (44). The Y. enterocolitica Yst enterotoxin offers another example of the link between temperature, osmolarity, and presumably supercoiling: at low osmolarity, yst is expressed only at a low temperature, but at high osmolarity, yst is expressed at 37°C (27).
After this report was submitted, another study analyzing secretion by the different type III secretion systems in Y. enterocolitica 8081 appeared (41). In the latter report, wild-type bacteria were shown to secrete some Yops (YopO, YopH, YopP, and YopE) at 28°C, and this secretion was not increased in an flhDC mutant background. As expected, wild-type bacteria secreted all the Yops at 37°C in the presence of low Ca2+ concentrations, but this secretion was not enhanced in an flhDC background. These results clearly differ from ours, and it is important to emphasize that they were obtained with a strain of biotype 1B (serotype O:8), while our results were obtained with a strain of biotype 2 (serotype O:9). Biotype 2 (serotype 3) and biotype 4 (serotype 9) strains are known to differ in many respects from biotype 1B (serotype 8) strains, including the lack of the Ysa system in the former (10). Understanding the discrepancy between the two reports would probably require a strict comparison of the two strains under the same experimental conditions.
S.B. was the recipient of a Van Eessel ICP fellowship, and M.-N.M. was funded by the Belgian Fonds pour la Formation à la Recherche dans l'Industrie et dans l'Agriculture (FRIA). This work was supported by the Belgian Fonds National de la Recherche Scientifique Médicale (Convention 3.4595.97); the Direction Générale de la Recherche Scientifique Communauté Française de Belgique (Action de Recherche Concertée 94/99-172); the Interuniversity Poles of Attraction ProgramBelgian State, Prime Minister's Office, Federal Office for Scientific, Technical and Cultural Affairs (PAI 4/03); and the EU TMR network (FMRX-CT98-0164).
Sophie Bleves and Marie-Noëlle Marenne contributed equally to this work.
Present address: Laboratoire d'Ingéniérie des Systèmes Macromoléculaires, UPR9027, IBSM/CNRS, 13402 Marseille Cedex 20, France. ![]()
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