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Journal of Bacteriology, July 2002, p. 3578-3585, Vol. 184, No. 13
0021-9193/02/$04.00+0 DOI: 10.1128/JB.184.13.3578-3585.2002
Copyright © 2002, American Society for Microbiology. All Rights Reserved.
Department of Life Sciences, Faculty of Agriculture, Kagawa University, Kagawa, Japan 761-0795
Received 28 January 2002/ Accepted 8 April 2002
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The environmental changes are transmitted to the cell by signal-transducing proteins. Cyclic AMP (cAMP) is one of the most common signaling molecules and is widely distributed from prokaryotes to eukaryotes. In mammalian cells, cAMP has significant roles in a variety of fundamental physiological regulatory mechanisms, e.g., cell differentiation, transcriptional regulation, and myocardial contraction. In the prokaryotes and in eukaryotic microorganisms, intracellular cAMP levels change in response to changes in environmental conditions. In Escherichia coli, there is an apparent interaction between concentrations of cAMP in cells and those of glucose in medium, and cAMP receptor protein-cAMP complex is essential for transcription of the glucose permease gene (20). Under conditions of nitrogen starvation, the pseudohyphal growth of Saccharomyces cerevisiae is controlled by cAMP signal transduction pathways (3). Upon nutrient starvation, the eukaryotic slime mold Dictyostelium discoideum undergoes a spectacular development cycle, in which extracellular cAMP acts as a chemoattractant controlling cell aggregation and also induces the differentiation of spore cells (14). In this organism, spore germination is also controlled by cAMP signal transduction pathways (10, 33).
The synthesis of cAMP is catalyzed by the enzyme adenylyl cyclase, and the adenylyl cyclases are found in all animals, plants, and bacteria. There are at least nine closely related isoforms of adenylyl cyclases for which the genes have been cloned and characterized in mammals (9). These adenylyl cyclases are membrane proteins of more than 1,000 amino acids that commonly have two sets of six transmembrane spans and two sets of conserved catalytic domains. E. coli and some eubacteria have hydrophilic adenylyl cyclases, which possess an N-terminal catalytic domain and a C-terminal regulatory domain (1). There is no sequence similarity between these proteins and mammalian adenylyl cyclases. Receptor-type adenylyl cyclases are composed of an extracellular domain, a transmembrane domain, and a cytoplasmic catalytic domain. The receptor-type adenylyl cyclases are thought to have the ability to sense an extracellular signal and to control adenylyl cyclase activity of the catalytic domain. These enzymes were initially found in protozoans and have since been identified in eubacteria, although how the activity of these prokaryotic enzymes is regulated is unknown (23).
In M. xanthus, the cellular concentration of cAMP increases rapidly during early starvation-induced and glycerol-induced development (17, 34). Campos and Zusman also observed that the formation of fruiting bodies was stimulated by the addition of cAMP to agar containing a low level of nutrients (5). However, the adenylyl cyclase gene of M. xanthus has not been cloned. In a previous study, we cloned the mokA gene encoding an osmosensor histidine kinase from an M. xanthus genomic library (21). An open reading frame is present in the region of about 6 kb upstream of the mokA gene, and its deduced gene product (CyaA) showed a high degree of similarity with receptor-type adenylyl cyclase. In this paper, we report characterization of the cyaA gene and the finding that cyaA encodes a protein that senses osmolarity and regulates cAMP synthesis during spore germination.
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DNA manipulation and sequencing. A positive clone which contains the mokA gene (21) was used in this experiment. Phage DNA was prepared from the clone and digested with KpnI, SalI, and SmaI. SalI (7.6-kb) and SmaI (2.3-kb) fragments were extracted from an 0.7% agarose gel. The DNA fragments were ligated into pBluescript SK and sequenced by the primer walking method using the ABI PRISM 310 genetic analyzer (Perkin-Elmer Co., Norwalk, Conn.) with the BigDye terminator kit (Perkin-Elmer Co.).
Construction of cyaA disruption mutant. To investigate the biological function of CyaA, we constructed a cyaA deletion-insertion mutant. First, a 2.2-kb fragment containing the cyaA gene was amplified by PCR with the primers 5'-GAAGCTGGGTGTCTACGACGC-3' and 5'-TACGGCTTCTGCCACATGGG-3'. The PCR product was ligated into vector pT7 Blue1. This plasmid was designated pTCYA. Plasmid pTCYA was digested with BalI, and a 4.9-kb fragment was recovered from an agarose gel. A 1.2-kb DNA fragment containing a kanamycin resistance (Kmr) gene was amplified by PCR with TnV as a template and a pair of primers (15). The resulting DNA fragment was inserted into the BalI site of pTCYA. The disrupted gene constructed as described above was amplified by PCR with the above oligonucleotides. The PCR products thus obtained were introduced into M. xanthus by electroporation (28).
Developmental assays. M. xanthus wild-type and cyaA mutant strains were grown on CYE medium up to 5 x 108 cells/ml and washed in TM buffer (10 mM Tris-HCl [pH 7.5] and 8 mM MgSO4). Aliquots (10 µl) of cell suspension (2 x 107 cells) were spotted on the surface of a clone fruiting (CF) agar plate or a CF agar plate containing up to 0.25 M NaCl or sucrose (16). The plates were incubated at 32°C. For glycerol induction of spore formation, cells were harvested at the mid-logarithmic phase of growth and washed with 1% Casitone-8 mM MgSO4, pH 7.6. Glycerol was added to a final concentration of 0.5 M, and cells were shaken at 30°C for 10 h (13).
Spore germination. M. xanthus spores were harvested from 7-day-old fruiting bodies. Undifferentiated cells were killed by five 30-s treatments with a Branson sonifier and by incubation at 60°C for 15 min. Spores were inoculated to 2 x 106 cells/ml in CYE medium containing up to 0.25 M NaCl or sucrose. The cultures were incubated at 30°C with continuous shaking until the germination in the medium without addition of NaCl or of sucrose was about 50%. The numbers of spores and vegetative cells were determined by counting with a hemacytometer.
Assays for cAMP accumulation. Wild-type and mutant cells were cultured on CF agar for 6 or 22 h at 32°C. Cells were harvested and washed with 10 mM sodium phosphate buffer (pH 7.0). The cells were resuspended in the buffer and then stimulated with 0.2 M NaCl or sucrose. Aliquots (0.1 ml) containing 3 x 108 cells were taken at the respective time points and heated to 95°C for 10 min.
To obtain spores, vegetative cells were spotted on CF agar and cultured for 7 days. Spores were harvested and washed with TM buffer. After sonication and heat treatment, spores were cultured in CYE medium for 12 to 14 h, and then NaCl or sucrose was added to a final concentration of 0.2 M. Aliquots (1 ml) containing 2 x 108 spores were taken at various times, and the spores were washed with 10 mM sodium phosphate buffer (pH 7.0), resuspended in 0.25 ml of the buffer, and then immediately sonicated with 0.2 g of acid-washed, 0.4-mm-diameter glass beads for 4 min at full power. Under this condition, approximately 95% of spores were disrupted. After centrifugation, a portion (80 µl) of the supernatant was mixed with 16 µl of perchloric acid (30% [vol/vol]) and then frozen. To determine the amount of cAMP, frozen samples were thawed, neutralized with KHCO3, and then centrifuged. Supernatants were used for assays with a commercial immunoassay kit (Amersham Pharmacia).
Time courses of cAMP levels under ionic-osmotic stress. Intracellular cAMP levels were determined in wild-type and mutant cells during development and spore germination under ionic-osmotic stress. To measure cAMP production during development, vegetative cells were spotted on CF agar or CF agar containing 0.15 M NaCl. Cells were harvested at various times, washed once by centrifugation in 10 mM sodium phosphate buffer (pH 7.0), and suspended in 0.25 ml of the phosphate buffer. The cells were immediately sonicated with 0.2 g of glass beads for 4 min at full power. After centrifugation, a portion (80 µl) of the supernatant was mixed with perchloric acid and neutralized with KHCO3. After centrifugation, an 0.1-ml aliquot of the supernatant was assayed for cAMP as described above.
To estimate internal cAMP levels during germination, spores were inoculated in CYE medium or in CYE medium containing 0.2 M NaCl at 1.2 x 108 spores/ml and cultured at 30°C. Cells (1.8 x 108) were harvested by centrifugation at various times, washed once, and suspended in 250 µl of 10 mM sodium phosphate buffer (pH 7.0). Extraction and enzyme immunoassay of cAMP were performed by the above-mentioned method.
Protein concentrations were determined by the Bradford technique (4). Experiments were repeated at least twice with similar results, and results of typical assays are shown.
Transcript analysis. Total RNA was isolated from M. xanthus at exponential growth phase, at germination, and during development as described previously (22). Contaminating DNA was removed by digestion with DNase. For reverse transcriptase PCR (RT-PCR), 1 µg of RNA was used for cDNA synthesis with BcaBEST polymerase in accordance with the manufacturer's protocol (Takara Shuzo, Kyoto, Japan). PCR was performed with Bca-optimized Taq polymerase, a 5' gene-specific primer (5'-ACACGGACATCTTCCGGC-3'), and a 3' gene-specific primer (5'-GAAGCTGGGTGTCTACGACGC-3'). Amplification products were separated by electrophoresis on 1.0% agarose gels and stained with ethidium bromide.
Nucleotide sequence accession number. The sequence of the M. xanthus cyaA gene has been deposited in the DDBJ sequence library under accession no. AB066096.
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FIG. 1. Restriction map of the cloned phage DNA harboring the cyaA and mokA genes of M. xanthus. Lines with arrows indicate their orientations. The 0.25-kb BalI(1)-BalI(3) fragment was replaced by the Kmr gene. SP, signal peptide; TM, transmembrane domain.
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FIG. 2. (A) Alignment of the deduced sensor domain of CyaA with the putative sensor histidine kinases HisK of Caulobacter crescentus and Pseudomonas aeruginosa and the target protein of serine/threonine kinase AfsR of Streptomyces griseus. (B) Alignment of the deduced catalytic domain of CyaA with the adenylyl cyclase CyaB1 of Anabaena sp. strain PCC7120, the adenylyl cyclase CyaA of S. aurantiaca, the adenylyl cyclase ACA of D. discoideum, and the adenylyl-guanylyl cyclase GCY of C. elegans. Amino acid residues in agreement for more than three residues are indicated by black shading. Gray shading indicates degrees of similarity among amino acid residues. Four conserved motifs (I to IV) in class III adenylyl cyclases are overlined.
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Stage-specific expression of CyaA. We investigated the expression of the cyaA gene in M. xanthus cells during growth, development, and spore germination by RT-PCR analysis (Fig. 3). The expected 1,190-bp RT-PCR products were mainly amplified from mRNA of developing and germinating cells. The cyaA gene was also expressed at a low level in vegetative cells. As a control, the expected product was not amplified without reverse transcription, indicating that there was no DNA contamination in the mRNA (data not shown).
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FIG. 3. RT-PCR analysis of cyaA gene expression in M. xanthus. Total RNAs prepared from cultures at exponential growth phase (E); at germination (G); and during development at 18 (D18), 36 (D36), and 60 (D60) h were used for RT-PCR analysis. Molecular sizes (M) of DNA fragments are given in bases.
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FIG. 7. Changes in intracellular cAMP levels in wild-type and cyaA mutant strains during development and germination under ionic osmostress. (A) Wild-type (circles) and cyaA mutant (squares) cells were developed on CF agar (open symbols) or on CF agar containing 0.15 M NaCl (solid symbols), and intracellular cAMP levels (solid lines) and numbers of spores (dashed lines) were determined at the time points indicated in the figure. (B) Wild-type (circles) and cyaA mutant (squares) spores were incubated in CYE medium (open symbols) or in CYE medium containing 0.2 M NaCl (solid symbols), and intracellular cAMP levels were determined at the time points indicated in the figure. The arrow indicates the time at which rod-shaped cells were seen in cultures with no addition of NaCl.
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FIG. 4. (A) Fruiting bodies of wild-type and cyaA mutant strains under high-ionic osmolarity. Vegetative cells were spotted on CF agar containing 0.1 M NaCl. Photographs of fruiting bodies were taken after 5 days of incubation. (B) Spore formation of M. xanthus wild type (solid circles) and cyaA mutant (open circles) on CF agar containing various concentrations of NaCl or sucrose. Spores were counted at 5 days of development with a hemacytometer.
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FIG. 5. (A) Germination of myxospores under high-ionic osmolarity. Photographs of spore germination were taken after 65 h of incubation with 0.2 M NaCl. (B) Spore germination of M. xanthus wild-type (solid bars) and cyaA mutant (open bars) spores in CYE medium containing various concentrations of NaCl or sucrose. Percent germination of each strain was determined by counting with a hemacytometer.
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FIG. 6. Assays for cAMP accumulation in wild-type and cyaA mutant spores. After wild-type spores (circles) and cyaA mutant spores (squares) were incubated in CYE medium for 12 h, 0.2 M NaCl (solid symbols) or 0.2 M sucrose (open symbols) was added to both cultures. Spores were assayed for total accumulated cAMP levels.
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Time courses of cAMP levels during development and germination in high salt. We next determined cAMP levels in wild-type and cyaA mutant cells during development and spore germination under ionic osmostress. Wild-type and cyaA mutant cells were cultured on CF agar or CF agar containing 0.15 M NaCl, and intracellular cAMP levels were determined over a time course of 120 h (Fig. 7A). In nonosmotic conditions, the intracellular cAMP levels of wild-type and cyaA mutant strains increased two- to threefold during the first 12 h of incubation. In the presence of NaCl accumulated cAMP levels of the wild-type strain were about twofold higher than those in its absence, and the cAMP accumulation stimulated by 0.15 M NaCl could be detected by 72 h of development. In contrast, the cyaA mutant developed under high osmolarity showed no increased intracellular cAMP levels during early stages of development, which was possibly due to damage of osmosensitive mutant cells.
Wild-type and cyaA mutant spores were germinated in CYE medium or in CYE medium containing 0.2 M NaCl, and the changes in intracellular cAMP levels were determined. As shown in Fig. 7B, the cAMP levels of wild-type spores under osmotic stress increased rapidly from 7 to 14 h of incubation and reached a maximum level at 20 h or approximately at the time of initiation of nonosmotic spore germination. The spores at the early stage of germination may not be susceptible to stimulation by osmolarity, because the spores are covered with thick spore coats. In contrast, adenylyl cyclase activity of cyaA mutant spores was not stimulated by 0.2 M NaCl, and the changes in cAMP levels of mutant spores during germination were similar to those of nonosmotically stressed wild-type and mutant spores. There was a three- to fourfold difference in cAMP level at 20 h between wild-type and cyaA mutant spores under ionic osmostress. When wild-type and cyaA mutant spores were incubated in the absence of NaCl for 20 or 26 h, the percentages of rod-shaped cells in each culture were 0.25 and 0.28% and 5 and 7%, respectively (data not shown). By 26 h of incubation, no vegetative-cell-like cells of either strain were observed in the cultures with 0.2 M NaCl. As heat-treated spores were used in this experiment, germination proceeded slowly compared with that of non-heat-treated spores (26).
In the developmental or germination time course of cAMP levels, mutant cells under high-ionic osmolarity showed significantly lower levels of cAMP accumulation than did wild-type cells, indicating that cAMP accumulation plays a role in enhancement of osmotic tolerance during development and germination.
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Hydropathy profile analysis suggested that M. xanthus CyaA possesses three potential transmembrane regions that connect an extracellular domain in the amino-terminal region to an internal catalytic domain in the carboxyl-terminal region. This structure is often found in the receptor-type guanylyl cyclases of eukaryotes. As M. xanthus CyaA is thought to be a receptor-type adenylyl cyclase, this implies that CyaA has the ability to sense an extracellular signal and control adenylyl cyclase activity. Mutation of cyaA caused significant reduction of fruiting body formation, spore formation, and spore germination at high osmolarity. The phenotypes of the mutant would not be due to polar effects, because there was no open reading frame that formed an operon with the cyaA gene. We next investigated whether CyaA was a sensor for osmolarity and was regulated by high osmolarity. When spores cultured in growth media were incubated at high osmolarity, there was an apparent difference in cAMP accumulation between wild-type and cyaA mutant strains. In wild-type spores, high osmolarity caused a rapid cAMP increase which peaked at 1 min and then slowly declined. The cAMP accumulation in wild-type cells was much more strongly stimulated by NaCl than by sucrose. In contrast, the mutant cells showed only weak NaCl-stimulated adenylyl cyclase activity. On the other hand, cAMP accumulation in cyaA mutant cells at developmental stages was stimulated by 0.2 M NaCl or sucrose, and the stimulated cAMP levels were similar to those of wild-type cells. Since the levels of cAMP accumulation were increased until at least 60 min after stimulation, the cAMP accumulation would be due to other adenylyl cyclases. However, the cyaA gene was expressed during development, and the cyaA mutant cells at developmental stages showed an osmosensitive phenotype. In addition, when wild-type and mutant cells were developed under high-ionic osmolarity, the mutant cells showed significantly lower intracellular cAMP levels than did the wild-type cells during the developmental period. These results indicate that CyaA also has a function in osmotic tolerance during development.
Receptor-type adenylyl cyclase genes have been cloned from protozoans, D. discoideum, and eubacteria. A receptor-type adenylyl cyclase, ACG, of D. discoideum is expressed only during germination and acts as an osmosensor that controls spore germination (32). No apparent sequence similarity in the sensor domain was found between CyaA of M. xanthus and ACG of D. discoideum.
In summary, our results indicated that M. xanthus CyaA is a transmembrane osmosensor protein during germination that directly produces cAMP in response to osmotic pressure that contributes to the osmotic tolerance of germinating cells. As far as we know, our results represent the first demonstration of an adenylyl cyclase that acts as a sensor in a prokaryote. The signal transduction pathway for osmoregulation of germination in D. discoideum is assumed to be as follows: the increased intracellular cAMP by osmotic stress activates a cAMP-dependent protein kinase (protein kinase A [PKA]), and the activated PKA inhibits spore germination (32). The first prokaryote protein serine/threonine kinase was discovered in M. xanthus, and at least 11 serine/threonine kinase genes have been submitted to the DDBJ sequence library. We are currently investigating whether M. xanthus possesses a cAMP-PKA pathway for osmotic transduction of development and germination.
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