Previous Article | Next Article ![]()
Journal of Bacteriology, January 2002, p. 540-546, Vol. 184, No. 2
0021-9193/01/$04.00+0 DOI: 10.1128/JB.184.2.540-546.2002
Copyright © 2002, American Society for Microbiology. All Rights Reserved.
Department of Bioscience and Biotechnology, Graduate School of Bioresource and Bioenvironmental Science, Kyushu University, 6-10-1 Hakozaki, Higashi-ku, Fukuoka 812-8581, Japan
Received 13 August 2001/ Accepted 25 October 2001
|
|
|---|
|
|
|---|
All bacterial SMases described above cause hemolysis and thus are suspected to be potential virulence factors. Disruption of the SMase genes of S. aureus and L. ivanovii resulted in decreased infectivity (2, 8), although the relationship between SMase activity and hemolytic activity is still unknown at the molecular level.
In this study, we report the molecular cloning and expression of a Mn2+-dependent SMase/hemolysin of an aquatic gram-negative bacterium, Pseudomonas sp. strain TK4. This report also shows that the C-terminal region of TK4 SMase is indispensable for the hemolytic activity but not for the SMase activity.
|
|
|---|
and BL21(DE3)pLysS, plasmid pUC118, and Pyrobest DNA polymerase were obtained from Takara Shuzo (Shiga, Japan). Sheep blood agar medium was from Japan Biotest (Tokyo, Japan). Plasmid pET23b was purchased from Novagen (Madison, Wis.), and plasmid pBluescript II SK was purchased from Stratagene (La Jolla, Calif.). Restriction enzymes, T4 DNA ligase, and bacterial alkaline phosphatase were obtained from Wako (Osaka, Japan). SM (from egg yolk), L-
-PC, L-
-phosphatidylethanolamine, L-
-phosphatidylglycerol, L-
-phosphatidic acid, L-
-phosphatidylserine, and SMase from S. aureus were purchased from Sigma (St. Louis, Mo.). Recombinant SMase from B. cereus was obtained from Higeta Shoyu Co., Ltd. (Tokyo, Japan). Sphingosylphosphorylcholine (SPC) was prepared as described previously (26). 4-Nitrobenz-2-oxa-1,3-diazole (NBD)-labeled substrates were enzymatically synthesized by using sphingolipid ceramide N-deacylase as described previously (19). L-
-Lysophosphatidylcholine was prepared by the hydrolysis of PC with phospholipase A2 from bee venom (Sigma) as described in reference 18. All other reagents were of the highest purity available.
Bacterial strains and culture conditions.
Pseudomonas sp. strain TK4 was isolated from a pond where eel culture has been conducted (11). TK4 was grown at 25°C in a medium containing 0.5% tryptone, 0.1% yeast extract, and 0.2% NaCl, pH 7.4, with shaking. E. coli DH5
and BL21(DE3)pLysS cells were used as host cells for the expression of SMase. DH5
was grown in Luria-Bertani medium or on sheep blood agar plates containing 100 µg of ampicillin/ml at 37°C. BL21(DE3)pLysS cells transformed with pET/SM-T or pET/SM-
186 were grown at 37°C in Luria-Bertani medium containing 100 µg of ampicillin/ml until the optical density at 600 nm reached 0.9. Then, the cultivation was continued for an additional 2 h at 37°C with or without 1 mM isopropyl-ß-D-thiogalactopyranoside (IPTG).
Physiological and biochemical tests of bacteria. The identification of strain TK4 was conducted according to the procedure outlined in the ninth edition of Bergeys Manual of Systematic Bacteriology (14). Motility, morphology, and Gram-staining characteristics were determined by light microscopy. A transmission electron microscope was employed for the observation of flagella with 2% p-tungstic acid. Utilization of each carbohydrate was determined with Hugh-Leifson medium (10). Kings medium was used to test for the production of diffusible pigment (12). Kovacs oxidase test was employed (13). Sensitivity to the vibriostatic agent 0/129 was tested according to the method of Shewan et al. (22). Bacterial DNAs were purified by the method of Marmur (17), and guanine-plus-cytosine (G+C) contents were determined by high-performance liquid chromatography (HPLC) as reported by Tamaoka and Komagata (27). A standard mixture of the four deoxyribonucleotides was purchased from Yamasa Shoyu (Chiba, Japan).
Phylogenetic analysis. The 16S ribosomal DNA (rDNA) was amplified using universal primers p27f (5prime;-AGA GTT TGA TCM TGG CTC AG-3prime;; positions 8 to 27; E. coli numbering [3]) and p1492r (5prime;-GGC TAC CTT GTT ACG ACT T-3prime;). PCR products were purified from a 1.0% agarose gel and were sequenced directly using nine different sequencing primers (9). The nucleotide sequences were aligned, and phylogenetic relationships were analyzed using CLUSTAL W (28), with other 16S rDNA sequences being obtained from the Ribosomal Database Project II (16).
Construction of a genomic DNA library of Pseudomonas sp. strain TK4.
Genomic DNA was isolated from Pseudomonas sp. strain TK4 and partially digested with Sau3AI. The Sau3AI fragments (2 to 10 kbp) were gel purified and ligated to BamHI-digested pUC118 DNA. The plasmids were used for the transformation of E. coli DH5
.
Expression screening and cloning of the gene encoding SMase.
Transformants of E. coli DH5
containing the plasmids were seeded (approximately 400 colonies/9.2-cm-diameter plate) on the sheep blood agar plates supplemented with 100 µg of ampicillin/ml and incubated at 37°C for 16 h. Positive colonies were surrounded by a transparent hemolytic zone on the agar. Among approximately 4,000 colonies of E. coli DH5
transformed with plasmids containing a Sau3AI-digested genomic DNA of strain TK4, one positive clone, designated H2, was isolated. The plasmid pH2 contains a 6.3-kbp insert. To obtain a shortened insert having full activity, the insert was further digested with NotI, SmaI, and SacII, and the resulting fragments were ligated into the multiple cloning site of the plasmid pBluescript II SK. Among three clones having the deleted inserts, only clone pNS2, carrying a 2.4-kbp NotI-SmaI fragment, was found to possess distinct hemolytic and SMase activity. The nucleotide sequence of pNS2 was determined as described below.
DNA sequencing and sequence analysis. The nucleotide sequences were determined by the dideoxynucleotide chain termination method with a BigDye Terminator Cycle Sequencing Ready Reaction Kit (Applied Biosystems Japan, Tokyo, Japan) and a DNA sequencer (Applied Biosystems Japan; model 377). DNA alignment and analysis were performed using DNASIS (Hitachi Software Engineering, Tokyo, Japan).
Assay of hemolysis. The hemolytic activity of the strain TK4 SMase was examined by adding enzyme to a 10% sheep erythrocyte suspension in 10 mM Tris-buffered saline (TBS), pH 7.5, containing 5 mM MnCl2, followed by incubation at 37°C for 30 min. To measure hot-cold hemolysis, aliquots from the incubation mixture were immediately cooled in an ice bath and centrifuged. The supernatants were then diluted to 4 volumes with distilled water and measured spectrophotometrically at 540 nm. A complete lysis of erythrocytes was obtained by adding distilled water instead of TBS.
Assay of SMase. The activity of SMase was measured using C12-NBD-SM as a substrate as described below. The reaction mixture contained 500 pmol of C12-NBD-SM and an appropriate amount of the enzyme in 20 µl of 25 mM Tris-HCl buffer, pH 7.5, containing 0.1% (wt/vol) Triton X-100 and 5 mM MnCl2. Following incubation at 37°C for 30 min, the reaction was terminated by heating the mixture in a boiling water bath for 5 min. The sample was dried with a Speed Vac concentrator, dissolved in 20 µl of chloroform-methanol (2/1 [vol/vol]), and applied to a thin-layer chromatography (TLC) plate, which was developed with chloroformmethanol0.02% CaCl2 (5/4/1 [vol/vol]) as a developing solvent. C12-NBD-Cer (NBD-dodecanoylsphingosine) released by the action of the enzyme and the remaining C12-NBD-SM were separated by TLC and then analyzed and quantified with a Shimadzu CS-9300 chromatoscanner (Shimadzu, Kyoto, Japan) (excitation, 475 nm; emission, 525 nm). One enzyme unit was defined as the amount capable of catalyzing the release of 1 µmol of C12-NBD-Cer/min from C12-NBD-SM under the conditions described above.
Phospholipase assay. Ten nanomoles of various phospholipids was incubated with an appropriate amount of enzyme in 25 mM Tris-HCl buffer, pH 7.5, containing 0.1% Triton X-100 and 5 mM MnCl2 at 37°C for 2 h. After the reaction, the reaction mixture was dried with a Speed Vac concentrator, dissolved in 20 µl of chloroform-methanol (2/1 [vol/vol]), and applied to a TLC plate, which was developed with chloroformmethanol0.02% CaCl2 (5/4/1 [vol/vol]). Primulin spray was used to detect phospholipids and their digests (23). The degradation of the substrates was quantified with an ATTO Lane Analyzer 2.2 (ATTO, Tokyo, Japan).
Purification of the recombinant SMase from E. coli.
E. coli DH5
cells transformed with pNS2 were grown at 37°C in Luria-Bertani medium (1 liter) containing 100 µg of ampicillin/ml for 16 h. The cells were then harvested by centrifugation and suspended in 50 ml of ice-cold extraction buffer (10 mM Tris-HCl buffer [pH 8.0], 20% sucrose, 10 mg of lysozyme/ml). After shaking for 10 min on ice, the solution was centrifuged at 5,000 x g for 10 min, and the supernatant obtained (periplasmic fraction) was used for the purification of SMase. The periplasmic fraction (50 ml) was dialyzed against buffer A (20 mM Tris-HCl buffer [pH 7.5] containing 2 M NaCl) at 4°C for 16 h and applied to a HiTrap Phenyl Sepharose FF column (1 ml; Amersham Pharmacia Biotech, Little Chalfont, Buckinghamshire, United Kingdom) preequilibrated with buffer A. The column was washed with 10 ml of buffer A, and then SMase was eluted with buffer B (20 mM Tris-HCl buffer, pH 7.5) and buffer C (20 mM Tris-HCl buffer [pH 7.5] containing 0.1% Triton X-100). The active fractions were pooled (28 ml) and applied to a HiTrap Q column (1 ml; Amersham Pharmacia Biotech) preequilibrated with buffer C. After the column had been washed with 10 ml of buffer C, the enzyme was eluted with buffer D (20 mM Tris-HCl buffer [pH 7.5], containing 0.1% Triton X-100 and 1 M NaCl) and buffer E (50 mM acetate buffer [pH 5.0], containing 0.1% Triton X-100 and 2 M NaCl).
Protein assay and PAGE. Protein content was determined by the bicinchoninic acid method (Pierce, Rockford, Ill.) or sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) using bovine serum albumin as the standard. SDS-PAGE was carried out according to the method of Laemmli (15). The proteins on the SDS-polyacrylamide gel were visualized by staining with silver staining solution (20) and determined with a Shimadzu CS-9300 chromatoscanner with the reflectance mode set at 540 nm.
Western blotting. The recombinant proteins, separated by SDS10% PAGE, were transferred onto a polyvinylidene difluoride membrane by using a semidry blotter (Bio-Rad Laboratories, Hercules, Calif.). The membrane was then incubated with antipolyhistidine-tagged mouse monoclonal antibody (Invitrogen Japan, Tokyo, Japan) or anti-T7-tagged mouse monoclonal antibody (Novagen, Darmstadt, Germany) for 6 h at room temperature. The bands were visualized with anti-mouse immunoglobulin G-horseradish peroxidase antibody and a peroxidase staining kit (Nacalai Tesque, Kyoto, Japan).
Construction of expression vector and deletion mutants.
The following primers were used for PCR: USM52 (5prime;-GCA AGC TTA TGA CCC AGG CCC AGG CCG CC-3prime;), LSM1531X (5prime;-TTT CTC GAG GAA ACG CAG CTT GCT GCG-3prime;), and LSM973X (5prime;-TTT CTC GAG GTC GGC GTA GGT GAA GGC-3prime;). USM52 contained a HindIII restriction site (underlined), and LSM1531X and LSM973X contained a XhoI restriction site (double underlined). PCRs were performed in a Gene Amp PCR System 2400 (Applied Biosystems Japan) for 30 cycles (each consisting of denaturation at 98°C for 10 s and extension at 68°C for 2 min) using Pyrobest DNA polymerase, pNS2 as a template, and the following sets of primers: for the construction of pET/SM-T, USM52-LSM1531X, and for that of pET/SM-
186, USM52-LSM973X. After gel purification, the amplified products were digested with HindIII and XhoI. The HindIII-XhoI fragments were cloned into the HindIII/XhoI-digested pET23b.
Nucleotide sequence accession number. The nucleotide sequence reported in this paper has been submitted to the GenBank/EBI data bank with accession no. AB066097.
|
|
|---|
Cloning, sequencing, and alignment of SMase/hemolysin of Pseudomonas sp. strain TK4. The SMase/hemolysin gene of TK4 was cloned as described in Materials and Methods. A colony of E. coli cells surrounded by a clear hemolytic zone was found on a sheep blood agar plate when the host cell was transformed with pNS2 carrying a 2.4-kbp NotI-SmaI fragment. SMase activity was also detected in the lysates of E. coli carrying pNS2, indicating that pNS2 contains the SMase/hemolysin gene. Two putative open reading frames (ORFs) were identified in pNS2. The shorter ORF (ORF1), possibly lacking the N-terminal sequence, shows 63% identity at the amino acid level with the C-terminal portion of acyl-coenzyme A dehydrogenase from Pseudomonas aeruginosa PAO1 (25). The longer ORF (ORF2), consisting of 1,548 nucleotides, encoded a polypeptide of 516 amino acids that exhibited significant identity to the sequences of SMases reported previously.
The amino acid sequence of TK4 SMase showed 32, 30, 31, and 38% identity to that of the enzymes from B. cereus, S. aureus, L. ivanovii, and L. interrogans, respectively (Fig. 1). It should be noted, however, that the first three lacked one-third of the sequence of strain TK4 at the C-terminal end. The putative binding sites for Mg2+ and substrates glutamic acid (E,
) and asparagine (N,
), respectively, were well conserved in these bacterial SMases (Fig. 1). Interestingly, the amino acid sequence of a hypothetical protein of unknown function from Chromobacterium violaceum (accession no. AF172851-1) showed 23% identity to that of TK4 SMase.
![]() View larger version (66K): [in a new window] |
FIG. 1. Alignment of TK4 SMase and other bacterial homologs. Four bacterial SMases and one unknown protein from C. violaceum are aligned with TK4 SMase. Residues conserved in more than 30% of strains having an SM-specific SMase are shown on a black background, while those found in all the strains are indicated by asterisks. Gaps inserted into the sequences are indicated by dots. Alignment was performed using CLUSTAL W (28). The Mg2+-complexing glutamic acid ( ) and asparagine involved in substrate binding ( ) are indicated below the sequence.
|
Purification of recombinant SMase from E. coli carrying pNS2.
E. coli DH5
carrying pNS2 produced an SMase at 11 mU/mg of protein regardless of the presence or absence of IPTG, indicating that the SMase was probably transcribed from an original TK4 promoter. TK4 SMase was extracted from the periplasmic space of the recombinant E. coli and purified by sequential chromatography on HiTrap Phenyl Sepharose FF and HiTrap Q as described in Materials and Methods. The recombinant SMase was finally purified more than 3,000-fold with an overall yield of 5.4% (Table 1). The most effective step for purification of the enzyme was chromatography using HiTrap Q, by which most of the contaminating proteins were eluted with buffer D (20 mM Tris-HCl buffer [pH 7.5] containing 1 M NaCl and 0.1% Triton X-100), whereas the SMase was eluted with buffer E (50 mM acetate buffer [pH 5.0] containing 2 M NaCl and 0.1% Triton X-100), indicating that the enzyme was strongly adsorbed on an anion-exchange column. Since the pI of the TK4 SMase is not that high, the binding of the enzyme to the column seems to be not entirely due to ionic binding. By this chromatography, the specific activity of the enzyme was increased by at least 10-fold with 10% recovery. The final preparation of the enzyme gave a single protein band corresponding to a molecular mass of 57.7 kDa on SDS-PAGE after staining with silver staining solution under reducing conditions (Fig. 2). This value agreed well with the molecular weight deduced from the nucleotide sequence.
|
View this table: [in a new window] |
TABLE 1. Purification of SMase from E. coli carrying pNS2
|
![]() View larger version (82K): [in a new window] |
FIG. 2. SDS-PAGE of the purified recombinant TK4 SMase. Lanes 1 and 5, standard proteins; lane 2, periplasmic fraction showing SMase activity; lane 3, fractions containing SMase from HiTrap Phenyl Sepharose FF; lane 4, final preparation from HiTrap Q. Proteins were stained with a silver staining solution. Standard proteins (molecular weights in parentheses) are phosphorylase b (94,000), bovine serum albumin (67,000), ovalbumin (43,000), carbonic anhydrase (30,000), soybean trypsin inhibitor (20,100), and lysozyme (14,400).
|
![]() View larger version (13K): [in a new window] |
FIG. 3. General properties of the recombinant TK4 SMase. The figure shows restoration of SMase activity after EDTA treatment. SMase was inactivated with 1 mM EDTA, and the activity was restored by addition of cations. , MgCl2; , MnCl2; ; CaCl2. Restoration of SMase activity was examined by C12-NBD-SM hydrolysis (A) and hemolysis (B). The dotted line in panel B shows the basal activity before EDTA treatment.
|
SM hydrolysis and hemolytic activity of deletion mutants of TK4 SMase.
The TK4 SMase is quite large in comparison with the SMases of Bacillus, Staphylococcus, and Listeria, in which the sequence corresponding to the TK4 carboxyl-terminal region is absent, although the deduced amino acid sequences of the four enzymes were similar (Fig. 1). Thus, we attempted to construct a deletion mutant of TK4 SMase which lacks 186 amino acids at the carboxyl terminus and to determine whether the carboxyl-terminal end of the TK4 enzyme is essential for the activities of SM hydrolysis and hemolysis. The recombinant TK4 enzyme (transfectant with pET/SM-T) and its deletion mutant (transfectant with pET/SM-
186) were labeled with T7 tag and polyhistidine tag at the amino and carboxyl termini, respectively (Fig. 4A), and subjected to Western blotting using anti-T7 or antipolyhistidine monoclonal antibody. As a result, it was found that recombinant TK4 SMase and its deletion mutant had molecular masses of 59 and 38 kDa on SDS-PAGE, respectively (Fig. 4B). The addition of IPTG did not affect the molecular mass or expression of the enzyme in soluble fractions, although the insoluble enzyme, perhaps that in the inclusion body, increased markedly (data not shown). In the presence of 0.1% Triton X-100, the activity of the deletion mutant was almost the same as that of the wild-type enzyme when egg yolk SM was used as a substrate (Fig. 4C). Interestingly, however, a distinct difference was found in the hemolytic activity, i.e., the deletion mutant lost all the hemolytic activity for sheep erythrocytes even when an excess amount of the enzyme was used for the reaction (Fig. 4D, upper panel). It should be noted that SM hydrolysis was observed for intact erythrocytes after treatment with wild-type enzyme but not with the deletion mutant in TBS without addition of detergents (Fig. 4D, lower panel). These results clearly indicate that the C-terminal region of TK4 SMase is essential for the SM hydrolysis of intact erythrocytes followed by hemolysis, whereas deletion of the region did not affect the SM hydrolysis in detergent micelles.
![]() View larger version (29K): [in a new window] |
FIG. 4. SM hydrolysis and hemolytic activity of deletion mutant. (A) Construction of the SMase expression vector and its deletion mutants. The black and hatched boxes indicate the T7 tag and polyhistidine tag, respectively. The region homologous to the B. cereus SMase is indicated by an arrow. Details are given in Materials and Methods. (B) Western blotting of SMase and its deletion mutant. Lanes 1 and 2, mock transfectants; lanes 3 and 4, wild-type SMase; lanes 5 and 6, deletion mutant. -, no addition of IPTG; +, addition of 1 mM IPTG. Crude soluble proteins, excluding inclusion bodies, were subjected to SDS10% PAGE, transferred onto a polyvinylidene difluoride membrane, and detected with anti-T7 monoclonal antibody as described in Materials and Methods. (C) SMase activity for egg yolk SM. SM (20 nmol) was incubated at 37°C for 30 min with lysates from transfectants in 25 mM Tris-HCl buffer, pH 7.5, containing 5 mM MnCl2 and 0.1% Triton X-100. (D) Hemolytic activity for sheep erythrocytes (upper panel). Intact sheep erythrocytes were incubated at 37°C for 30 min with lysates (130 mU/100 µl). Hemolysis was determined by the method described in Materials and Methods. After incubation, SM was extracted from erythrocytes and analyzed by TLC (lower panel). TLC was conducted with chloroformmethanol0.02% CaCl2 (5/4/1 [vol/vol]) as a developing solvent and by staining with Coomassie brilliant blue R-250. mock, no SMase gene vector transfectants; pET/SM-T, TK4 SMase gene transfectants; pET/SM- 186, 186-amino-acid-deletion mutant.
|
|
|
|---|
Over the past decade, several microbial SMases have been cloned and characterized (4, 7, 21, 30). The amino acid sequence of TK4 SMase shows about 30 to 40% identity with that of other microbial SMases reported to date; however, little identity was found with mammalian SMases. The genome project for P. aeruginosa has been completed and revealed that this gram-negative bacterium possesses a gene encoding phospholipase C but not SMase C (25).
TK4 SMase has properties clearly different from those of other microbial SMases. (i) For TK4 SMase, Mn2+ is the preferred divalent cation for hydrolysis of SM and hemolysis. In contrast, Bacillus and Staphylococcus enzymes are activated by Mg2+ and by Co2+ and Ni2+, respectively. Interestingly, TK4 enzyme was also activated by Mg2+ but not by Co2+ and was completely inhibited by Ni2+. (ii) TK4 SMase showed broad specificity for the fatty acid moiety of SM, i.e., TK4 enzyme hydrolyzed NBD-SPC, which lacks the fatty acid moiety of SM, while Staphylococcus and Bacillus SMases did not hydrolyze NBD-SPC.
In molecular mass, the SMase from TK4 (58.1 kDa) is similar to that from L. interrogans (63.3 kDa) (21) and completely different from those from S. aureus (37.4 kDa) (4), B. cereus (36.9 kDa) (30), and L. ivanovii (38.5 kDa) (7). The alignment of the five enzymes revealed that Staphylococcus, Bacillus, and Listeria SMases lacked the C-terminal region of the former two enzymes. Interestingly, the recombinant leptospiral SMase had a molecular mass of 39.2 kDa and a sequence identical to the N-terminal region of the deduced amino acid sequence of the 63.3-kDa protein, suggesting that the C-terminal region was lost during the processing of the enzyme in the host cells, E. coli minicells (21). At present, it is not clear whether the 63.3-kDa protein of L. interrogans had SMase activity, although the 39.2-kDa protein showed both SMase and hemolytic activities (21). In the present study, the molecular mass of the purified recombinant TK4 SMase (57.7 kDa) is highly consistent with that deduced from the nucleotide sequence (58.1 kDa), and thus, the enzyme is not likely to be processed or modified in E. coli cells. This study clearly indicated that the deletion of 186 amino acids from the C-terminal end of TK4 SMase completely abolished the hemolytic activity, although the activity for SM in Triton X-100 micelles was not affected (Fig. 4C and D).
SMase is considered to be a virulence factor for various infectious diseases, since SMase producers are usually serious or opportunistic pathogens. For example, L. interrogans is a pathogen causing leptospirosis, an infectious disease in both humans and wild and domestic animals (5), and S. aureus is a well-known opportunistic pathogen (6). Although the relationship between microbial SMase and infectious diseases is still unclear at the molecular level, SMase could cause hemolysis when SMase-producing microbes invade the host. The S. aureus SMase is also known as a ß-toxin causing hemolysis. It is worth noting that ß-toxin-producing S. aureus showed strong infectivity compared with the toxin-negative mutant (2). It is also noted that all cloned SMases, including the one from TK4, caused hemolysis. The possible role of the SMase of TK4, which was isolated from an eel culture, in fish diseases should be clarified.
This work was supported in part by a Grant-in Aid for Scientific Research on Priority Areas (B) (12140204) and a Grant-in Aid for Scientific Research (B) (13460044) from the Ministry of Education, Culture, Sports, Science and Technology of Japan.
|
|
|---|
This article has been cited by other articles:
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Copyright © 2009 by the American Society for Microbiology. For an alternate route to Journals.ASM.org, visit: http://intl-journals.asm.org | More Info»