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Journal of Bacteriology, March 2002, p. 1417-1422, Vol. 184, No. 5
0021-9193/02/$04.00+0 DOI: 10.1128/JB.184.5.1417-1422.2002
Copyright © 2002, American Society for Microbiology. All Rights Reserved.
Disruption of lolCDE, Encoding an ATP-Binding Cassette Transporter, Is Lethal for Escherichia coli and Prevents Release of Lipoproteins from the Inner Membrane
Shin-ichiro Narita,
, Kimie Tanaka, Shin-ichi Matsuyama, and Hajime Tokuda*
Institute of Molecular and Cellular Biosciences, University of Tokyo, Bunkyo-ku, Tokyo 113-0032, Japan
Received 16 July 2001/
Accepted 28 November 2001

ABSTRACT
ATP-binding cassette transporter LolCDE was previously identified,
by using reconstituted proteoliposomes, as an apparatus catalyzing
the release of outer membrane-specific lipoproteins from the
inner membrane of
Escherichia coli. Mutations resulting in defective
LolD were previously shown to be lethal for
E. coli. The amino
acid sequences of LolC and LolE are similar to each other, but
the necessity of both proteins for lipoprotein release has not
been proved. Moreover, previous reconstitution experiments did
not clarify whether or not LolCDE is the sole apparatus for
lipoprotein release. To address these issues, a chromosomal
lolC-lolD-lolE null mutant harboring a helper plasmid that carries
the
lolCDE genes and a temperature-sensitive replicon was constructed.
The mutant failed to grow at a nonpermissive temperature because
of the depletion of LolCDE. In addition to functional LolD,
both LolC and LolE were required for growth. At a nonpermissive
temperature, the outer membrane lipoproteins were mislocalized
in the inner membrane since LolCDE depletion inhibited the release
of lipoproteins from the inner membrane. Furthermore, both LolC
and LolE were essential for the release of lipoproteins. On
the other hand, LolCDE depletion did not affect the translocation
of a lipoprotein precursor across the inner membrane and subsequent
processing to the mature lipoprotein. From these results, we
conclude that the LolCDE complex is an essential ABC transporter
for
E. coli and the sole apparatus mediating the release of
outer membrane lipoproteins from the inner membrane.

INTRODUCTION
Bacterial lipoproteins having a lipid-modified cysteine residue
at the N terminus are anchored to membranes through the N-terminal
fatty acyl chains. In gram-negative bacteria, lipoproteins are
localized in either the inner or outer membrane. Lipoproteins
are synthesized with signal peptides in the cytoplasm and then
translocated across the inner membrane by Sec machinery (
3,
15), followed by sequential modification reactions: formation
of a thioether linkage between the N-terminal cysteine residue
of the mature region and diacylglyceride, cleavage of the signal
peptide by lipoprotein-specific signal peptidase, and aminoacylation
of the N-terminal cysteine residue (
5,
15). Since lipoproteins
are more hydrophobic than nonlipidated outer membrane proteins,
localization of lipoproteins in the outer membrane requires
a distinct mechanism which enables the transport of lipoproteins
through the hydrophilic periplasmic space (
11). Furthermore,
the mechanism should distinguish the lipoprotein-sorting signal
since a subset of lipoproteins remains in the inner membrane
(
4,
16,
20).
We have identified five Lol proteins involved in the outer membrane localization of lipoproteins (10, 11, 21). Periplasmic chaperone LolA was found to form a hydrophilic complex with outer membrane-specific lipoproteins (11). The LolA-lipoprotein complex crosses the periplasm and then interacts with outer membrane receptor LolB, which mediates the anchoring of lipoproteins to the outer membrane (10). For formation of the LolA-lipoprotein complex, LolCDE in the inner membrane is required (21). LolCDE releases mature lipoproteins from the outer surface of the inner membrane in an ATP-dependent manner, leading to the formation of the LolA-lipoprotein complex (21). The lipoprotein-sorting signal is recognized at the release step, and the inner membrane-specific lipoproteins are not released. The functions of LolA and LolB have been clarified both in vivo and in vitro (10, 11, 18-22, 26). The LolCDE complex belonging to the ABC transporter superfamily comprises an ATPase subunit, LolD, and integral membrane proteins LolC and LolE. This complex was biochemically identified as a lipoprotein-releasing apparatus with proteoliposomes reconstituted from purified LolCDE and phospholipids (21). On the other hand, on the basis of our results, the functional complex could not be formed after its dissociation into subunits. Therefore, it is not clear whether or not both LolC and LolE are required for the apparatus. Moreover, it may be possible that other proteins can perform the function of LolCDE. In this study, we constructed a conditional lolC-lolD-lolE null strain and characterized the in vivo function of the LolCDE complex.

MATERIALS AND METHODS
Bacteria and plasmids.
The
Escherichia coli K-12 strains and plasmids used in this
study are listed in Table
1. DLP79-36 was a kind gift from Masaaki
Wachi.
Media and chemicals.
Luria-Bertani (LB) medium was used as the standard medium. Labeling
experiments were carried out in M63 (NaCl)-maltose minimal medium
(
23) supplemented with 20 µg of thiamine, 40 µg
of thymine, 40 µg of uracil, and 40 µg of each of
the amino acids except methionine and cysteine/ml. When required,
ampicillin, kanamycin, tetracycline, chloramphenicol, and spectinomycin
were added at concentrations of 50, 25, 10, 35, and 25 µg/ml,
respectively. Restriction enzymes and DNA-modifying enzymes
were obtained from Takara Shuzo Co. Proteinase K was from Merck,
and
L-arabinose was from Wako Pure Chemicals Industries Ltd.
Tran
35S-label (a mixture of 70% [
35S]methionine and 20% [
35S]cysteine;
1,000 Ci/mmol) was obtained from ICN. LolA was purified as described
previously (
11). Anti-LolC antibodies against a synthetic peptide
corresponding to the K239-to-E255 region of LolC were raised
in rabbits. Other antibodies against purified proteins were
raised.
Growth measurement.
The growth of E. coli cells was monitored by measuring the optical density (OD) at 660 nm. Overnight cultures at 30°C were diluted with prewarmed fresh LB medium and then incubated at 42°C. When OD reached 1, the culture was diluted 10-fold with fresh LB medium and then incubated further for various times. To determine the number of viable cells, aliquots of the culture were taken at various times, plated onto LB agar, and then incubated overnight at 30°C.
Construction of plasmids.
For the construction of helper plasmid pMAN1015, the coding regions of LolC, LolD, and LolE genes were amplified by PCR using pJY310 as a template and oligonucleotide primers U52 (5"-GATGAATTCGGAGGTTTAAATTTATGTACCAACCTGTCGCTCTATTTA-3") and W32 (5"-GAATTCAAGCTTACTGGCCGCTAAGGACTCGCGCAG-3"). The amplified DNA was digested with EcoRI and HindIII and then cloned into the same sites of pMAN997. For pNASCD, the coding regions of LolC and LolD genes were amplified using primers U51 (5"-CAGAATTCGAAGGAGATATAAATATGTACCAACCTGTCGCTC-3") and V31 (5"-CACTCTGCAGTTACTCCGCCCCCATCAG-3") and then cloned into the EcoRI-PstI sites of pMAN885EH. For pNASDE, the coding regions of LolD and LolE genes were amplified using primers V51 (5"-ACGATGAGCTCGAAGGAGATATAAATATGAATAAGATCCTGTTGCAATGC-3") and W31 (5"-AAGCCTGCAGTTTTTGTTCCACCAATATCAAACCC-3") and then cloned into the SacI-PstI sites of pMAN885EH. For pNASCDE, the coding regions of LolC, LolD, and LolE genes were amplified using primers U51 and W31 and then cloned into the EcoRI-PstI sites of pMAN885EH.
To construct pKM601 carrying a gene for L10PSR under the control of PBAD, a 0.6-kb BamHI-Bpu1102I fragment of pJYL10P (22) and a 0.4-kb Bpu1102I-XbaI fragment of pJY851 (23) were ligated with a 3.2-kb BamHI-XbaI fragment of pMAN885. L10PSR, a derivative of major outer membrane lipoprotein Lpp, carried Pro instead of Leu at position +10 and lacked the C-terminal Lys. This derivative remained release competent for a long time after its expression (22) and did not inhibit growth when it accumulated in the inner membrane (23). To construct pKT100 carrying spc and lppSR under the control of tacPO, the spc gene was amplified by PCR with pHM45
(14) as a template and inserted into the ScaI site in the bla gene of pJY151 (23).
Construction of a conditional lolCDE null mutant.
To replace the chromosomal lolC-lolD-lolE genes with the kan gene, plasmid pJY310, carrying lolC-lolD-lolE and flanking regions, was digested with XhoI and PmaCI (Fig. 1A) and then ligated with a DNA fragment containing kan, which was obtained by digestion of pSY343 (25) with HindIII, followed by treatment with T4 DNA polymerase and digestion with XhoI. The resultant plasmid, pMAN1014, carrying the
lolCDE::kan gene, was linearized with EcoRI and HindIII and then transformed into recD strain FS1576 to allow homologous recombination. Kanamycin-resistant transformants could be obtained at 30°C only when the lolC-lolD-lolE genes were provided by pMAN1015, which also carries a temperature-sensitive replicon derived from pMAN997. The
lolCDE::kan gene was then introduced into lpp mutant strain DLP79-36, harboring pMAN1015, by P1 transduction, followed by introduction of mutant recA from JC10240 by conjugation to construct CDE4. The chromosomal deletion of the lolC-lolD-lolE genes was confirmed by PCR.
Separation of the inner and outer membranes.
CDE4 cells harboring pKM601, which carries a gene for L10PSR
under the control of P
BAD, was grown at 30 or 42°C for 5
h on M63 (NaCl)-maltose minimal medium. L10PSR was induced for
5 min with 0.2% arabinose, followed by labeling for 1 min with
Tran
35S-label (10 µCi/ml). The labeled cells were converted
into spheroplasts as described previously (
11) and then disrupted
by sonication. After removal of unbroken cells by centrifugation
at 16,000
x g for 2 min, the envelope fraction was obtained
by centrifugation at 100,000
x g for 30 min and then fractionated
by 25 to 55% (wt/wt) sucrose density gradient centrifugation
at 60,000
x g for 12 h to obtain the inner and outer membranes.
Release of LppSR from spheroplasts.
The release of LppSR from spheroplasts was examined as described previously (11). Briefly, CDE4 cells harboring the specified plasmids were grown at 42°C, induced with IPTG (isopropyl-ß-D-thiogalactopyranoside), and then converted into spheroplasts. A suspension (300 µl) containing 5 x 108 spheroplasts was kept on ice for 3 min in the presence and absence of LolA (2 µg). M63 medium (750 µl) containing 0.25 M sucrose and 10 µCi of Tran35S-label was then added for 2-min labeling at 30°C. The labeling was chased by the addition of nonradioactive methionine and cysteine (each at 12 mM). The release of LppSR was terminated by chilling the reaction mixture in ice water and analyzed after fractionation into spheroplasts and medium by centrifugation at 16,000 x g for 2 min.
Immunoprecipitation, SDS-PAGE, and Western blot analyses.
Immunoprecipitation was carried out as described previously (12). Sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) was performed as described previously (6). LolC was analyzed on a 10% polyacrylamide gel as described by Laemmli (8). Proteins labeled with Tran35S-label were analyzed by SDS-PAGE, followed by fluorography with Enlightning (NEN Life Science Products, Inc.). Western blot analyses were carried out as described previously (24).

RESULTS AND DISCUSSION
Construction of a conditional lolCDE null mutant.
We previously identified LolCDE as a lipoprotein-releasing apparatus
of the inner membrane using proteoliposomes reconstituted from
purified LolCDE and phospholipids (
21). Moreover, a defective
LolD mutant having a single amino acid substitution in the Walker
A motif exhibited a dominant-negative effect and inhibited LolA-dependent
lipoprotein release from spheroplasts (
21). These biochemical
data clarified the function of LolCDE. However, whether all
three proteins are required and whether any other proteins can
perform the function of LolCDE are still open to question. We
addressed these issues by disrupting the
lolCDE genes. We recently
constructed a temperature-sensitive LolB null mutant and found
that LolB depletion at a nonpermissive temperature was very
efficient (
19). Furthermore, a basal level of LolB was found
to be sufficient for the outer membrane localization of lipoproteins
except Lpp, suggesting that efficient depletion of LolCDE is
also critical for characterization of the in vivo function of
LolCDE. Based on these observations, a conditional
lolCDE null
mutant was constructed, as described in Materials and Methods.
The lolCDE genes are essential for E. coli.
CDE4 cells grown overnight on LB medium at 30°C were harvested and then incubated at 42°C, a nonpermissive temperature for the replication of pMAN1015. The turbidity of the culture stopped increasing after about eight generations at 42°C (Fig. 1B), whereas the number of viable cells in the culture ceased to increase earlier than the culture turbidity. SDS-PAGE and immunoblotting analysis with anti-LolC antibodies of the membrane fraction revealed the depletion of LolC with increasing incubation time at 42°C (Fig. 1C). These results indicate that disruption of the lolC-lolD-lolE genes is lethal for E. coli.
Both LolC and LolE are integral membrane proteins that are considered to constitute the membrane-spanning domains of the LolCDE complex (21). Both proteins are predicted to span the membrane four times and exhibit 26% identity in amino acid sequence. Moreover, the N-terminal 60 residues of the two proteins exhibit 55% identity (21). It seemed possible, therefore, that LolC and LolE could substitute for each other and that a functional complex could be formed from one of the two proteins and LolD. To determine whether or not both LolC and LolE are essential for growth, the lolC-lolD and lolD-lolE regions were cloned into plasmid vector pMAN885EH under the control of the PBAD promoter to construct pNASCD and pNASDE, respectively. Both pNASCD and pNASDE, as well as pMAN885EH, failed to support the growth of CDE4 at 42°C, irrespective of the presence or absence of arabinose (Fig. 2). When LolC and LolD were induced in the absence of LolE, the growth of CDE4 was more severely inhibited (Fig. 2B). On the other hand, pNASCDE carrying the lolC-lolD-lolE genes on pMAN885EH complemented the
lolCDE::kan mutation of CDE4 even in the absence of arabinose (Fig. 2A), suggesting that a basal level of LolCDE can support growth. These results indicate that both LolC and LolE are essential.
Membrane localization of outer membrane lipoproteins in CDE4.
The LolCDE complex has been shown to catalyze the release of
outer membrane lipoproteins from reconstituted proteoliposomes
(
21). Depletion of LolCDE is therefore expected to perturb the
localization of outer membrane lipoproteins in vivo. To test
this, we examined the membrane localization of L10PSR, a derivative
of Lpp, under LolCDE-depleted conditions. CDE4 cells were transformed
with pKM601, which carries a gene for L10PSR under the control
of P
BAD, and grown at 30 or 42°C on M63 (NaCl)-maltose minimal
medium, and then 0.2% arabinose was added to induce L10PSR.
The cells were labeled with Tran
35S-label and then converted
into spheroplasts. Cell envelope fractions prepared after sonic
disruption of spheroplasts were separated by sucrose density
gradient centrifugation. When cells were grown at 30°C,
35S-labeled L10PSR was recovered in higher-density fractions
together with OmpA (Fig.
3). In contrast, when cells were grown
at 42°C, the majority of
35S-labeled L10PSR was recovered
in lower-density fractions, whereas the distribution of
35S-labeled
OmpA at 42°C was essentially the same as that at 30°C.
These results indicate that LolCDE is essential for the correct
localization of outer membrane lipoproteins in vivo.
Both LolC and LolE are required for the release of outer membrane lipoproteins from the inner membrane.
To determine whether or not both LolC and LolE are essential
for the release of lipoproteins, we constructed plasmid pKM100,
which carries spectinomycin resistance gene
spc and
lppSR under
the control of
tacPO. This plasmid was transformed into CDE4
cells harboring pMAN885EH, pNASCD, pNASDE, or pNASCDE. The transformants
were grown at 42°C, and then the expression of LppSR was
induced. The induced cells were converted into spheroplasts
and then labeled with Tran
35S-label at 30°C in the presence
and absence of LolA, followed by a chase with cold methionine
and cysteine. LppSR remaining in spheroplasts or released into
the spheroplast supernatant was examined by SDS-PAGE and fluorography
(Fig.
4A). Spheroplasts prepared from cells harboring pNASCDE
exhibited efficient release of LppSR in a LolA-dependent manner.
In contrast, when LolC or LolE was depleted, the release of
LppSR was severely inhibited (Fig.
4A), indicating that both
LolC and LolE are essential for lipoprotein release.
We previously observed that both the LolD mutation (
21) and
LolB depletion (
19) inhibited the release of lipoproteins from
the inner membrane without perturbation of the translocation
of lipoprotein precursors across the inner membrane and subsequent
processing to mature lipoproteins. The mobility of lipoproteins
remaining in the inner membrane (Fig.
3 and
4) upon LolCDE depletion
was indistinguishable from that of lipoproteins localized in
the outer membrane (Fig.
3) or released into the spheroplast
supernatant (Fig.
4). These results, taken together, strongly
indicate that the Sec-dependent translocation and modification
of the lipoprotein precursors are completely independent of
and not affected by the Lol-mediated reactions. Since the LolCDE
complex mediates the first step of lipoprotein localization
reactions, we examined whether or not lipoproteins remaining
in spheroplasts upon LolCDE depletion are exposed on the outer
surface of the inner membrane and therefore sensitive to external
proteinase K. Since Lpp forms a proteinase K-resistant structure
(
11), we examined the proteinase K sensitivity of outer membrane
lipoprotein Pal, expressed from the chromosome. CDE4 cells harboring
pKM601 were grown at 30 or 42°C and then converted into
spheroplasts, followed by pulse labeling. Like L10PSR expressed
from pKM601, Pal remained in LolCDE-depleted spheroplasts even
in the presence of LolA (data not shown). When the spheroplasts
were treated with proteinase K, Pal was completely digested
(Fig.
4B). Pal remaining in LolCDE-containing spheroplasts due
to the omission of LolA was also proteolyzed. On the other hand,
cytoplasmic elongation factor Tu was resistant to proteinase
K. These results indicate that the accumulation of mature lipoproteins
in the inner membrane due to LolCDE depletion does not affect
upstream reactions, which lead to the formation of mature lipoproteins
on the outer surface of the inner membrane.
Depletion of the LolCDE complex or its components nearly completely inhibited the release of lipoproteins from spheroplasts (Fig. 4A), indicating that LolCDE is the sole lipoprotein-releasing apparatus functioning in spheroplasts. On the other hand, a portion of L10PSR was localized in the outer membranes of LolCDE-depleted cells (Fig. 3), suggesting that other proteins, i.e., in addition to LolCDE, might be involved in the outer membrane localization of lipoproteins in cells. However, the presence of a second system seems to be unlikely for the following reasons. The outer membrane localization in cells takes place very rapidly even in the presence of a basal level of Lol proteins (19). Since the depletion of any one of the Lol factors causes severe inhibition of not only growth but also protein synthesis, radiolabeling of lipoproteins had to start immediately before growth inhibition occurred. It is therefore likely that a portion of L10PSR was localized in the outer membrane due to incomplete depletion of LolCDE.
E. coli has been predicted to possess 57 ABC transporters (9). As far as is known, LolCDE and MsbA (7) are the only essential ABC transporters of E. coli. MsbA was recently found to be involved in the transport of lipids and lipopolysaccharides from the inner membrane to the outer membrane (2). Whether or not lipid transport through the periplasm involves a periplasmic carrier protein such as LolA is of great interest.

ACKNOWLEDGMENTS
We thank Masaaki Wachi for
E. coli DLP79-36 and Rika Ishihara
for technical assistance and secretarial support.
This work was supported by grants to H.T. from CREST of the Japan Science and Technology Corporation and from the Ministry of Education, Science, Sports and Culture of Japan.

FOOTNOTES
* Corresponding author. Mailing address: Institute of Molecular and Cellular Biosciences, University of Tokyo, 1-1-1 Yayoi, Bunkyo-ku, Tokyo 113-0032, Japan. Phone: 81-3-5841-7830. Fax: 81-3-5841-8464. E-mail:
htokuda{at}iam.u-tokyo.ac.jp.

Present address: Department of Molecular Life Science, Tokai University School of Medicine, Isehara 259-1193, Japan. 

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Journal of Bacteriology, March 2002, p. 1417-1422, Vol. 184, No. 5
0021-9193/02/$04.00+0 DOI: 10.1128/JB.184.5.1417-1422.2002
Copyright © 2002, American Society for Microbiology. All Rights Reserved.
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