Previous Article | Next Article 
Journal of Bacteriology, March 2002, p. 1759-1766, Vol. 184, No. 6
0021-9193/02/$04.00+0 DOI: 10.1128/JB.184.6.1759-1766.2002
Copyright © 2002, American Society for Microbiology. All Rights Reserved.
A Two-Component Regulator Mediates Population-Density-Dependent Expression of the Bradyrhizobium japonicum Nodulation Genes
John Loh, Dasharath P. Lohar, Brett Andersen, and Gary Stacey*
Center for Legume Research and Department of Microbiology, The University of Tennessee, Knoxville, Tennessee 37996
Received 28 August 2001/
Accepted 4 December 2001

ABSTRACT
Bradyrhizobium japonicum nod gene expression was previously
shown to be population density dependent. Induction of the
nod genes is highest at low culture density and repressed at high
population densities. This repression involves both NolA and
NodD2 and is mediated by an extracellular factor found in
B. japonicum conditioned medium. NolA and NodD2 expression is maximal
at high population densities. We demonstrate here that a response
regulator, encoded by
nwsB, is required for the full expression
of the
B. japonicum nodYABC operon. In addition, NwsB is also
required for the population-density-dependent expression of
both
nolA and
nodD2. Expression of
nolA and
nodD2 in the
nwsB mutant remained at a basal level, even at high culture densities.
The
nwsB defect could be complemented by overexpression of a
second response regulator, NodW. Consistent with the fact that
NolA and NodD2 repress
nod gene expression, the expression of
a
nodY-lacZ fusion in the
nwsB mutant was unaffected by culture
density. In plant assays with
GUS fusions, nodules infected
with the wild type showed no
nodY-GUS expression. In contrast,
nodY-GUS expression was not repressed in nodules infected with
the
nwsB mutant. Nodule competition assays between the wild
type and the
nwsB mutant revealed that the addition of conditioned
medium resulted in a competitive advantage for the
nwsB mutant.

INTRODUCTION
The bacterial nodulation genes (
nod,
nol, and
noe) are required
for rhizobial species to nodulate their host plants. The protein
products of these genes are involved in the biosynthesis of
a lipochitooligosaccharide molecule (i.e., the Nod signal) that
initiates early developmental stages of nodule formation (reviewed
in reference
10). The nodulation genes are induced in response
to plant-produced flavonoids. Central to the regulation of the
nodulation genes are the rhizobial
nodD gene products (
12,
19,
22,
38). The NodD proteins belong to the LysR family of prokaryotic
transcriptional regulators (
37). In
Bradyrhizobium japonicum,
members of two other families of global regulators (NodVW and
NolA) are also involved in modulating the expression of the
nodulation genes. NodVW belongs to the two-component regulatory
family and positively activates expression of the nodulation
genes by isoflavonoids (
20,
28,
36). NodVW is essential for
the nodulation of cowpea (
Vigna unguiculata), mung bean (
Vigna radiata), and siratro (
Macroptilium atropurpureum) but not soybean
(
20). This host-specific requirement for NodVW may be explained
by the fact that soybean plants produce isoflavones that interact
with NodD1 or NodVW, thus allowing for the nodulation of soybean.
The inability of a NodVW mutant to nodulate cowpea, siratro,
and mung bean suggests that these plants may produce inducers,
different from that of soybean, which interact specifically
with NodVW and not NodD1. Alternatively, the levels of Nod signals
required for nodulation may vary according to the host plant.
Thus, while NodD1-mediated Nod signal production is sufficient
for soybean nodulation, the level of Nod signal production necessary
for cowpea, siratro, and mung bean nodulation requires the concerted
effort of both NodVW and NodD1. Two-component systems commonly
consist of a membrane-bound sensor kinase and a downstream response
regulator (reviewed in reference
43). Typical of two-component
systems, NodV and NodW function via a series of phosphorelay
steps (
28). Initiation of the phosphorylation cascade is triggered
in response to the isoflavonoid genistein, resulting in the
phosphorylation of the sensor kinase NodV. NodV subsequently
phosphorylates its cognate response regulator, NodW. Sequence
alignments with other two-component regulators suggest that
NodW is probably phosphorylated at the conserved aspartate residue
(Asp70) at residue 70. Consistent with this, a mutant NodW (i.e.,
NodWD70N), containing an aspartate-to-asparagine substitution,
was not phosphorylated in vivo or in vitro (
28). Isoflavonoid-mediated
phosphorylation of NodW plays a key role in modulating
nod gene
expression and nodulation. For instance,
B. japonicum strains
defective in
nodW demonstrated wild-type levels of isoflavonoid-induced
nod gene (i.e.,
nodYABCSUIJ operon) expression and nodulation
when complemented with wild-type
nodW but not by the
nodW gene
encoding the NodWD70N mutant protein (
28). NwsAB forms a second
two-component system in
B. japonicum (
21). NwsB, the response
regulator, was identified by its ability, when overexpressed
from an external promoter, to complement the nodulation defects
of a NodW mutant. This complementation is thought to occur as
a result of cross talk between the NodVW and NwsAB two-component
systems (
21). NwsB and NodW share 65% amino acid identity over
their entire lengths, as well as a conserved helix-turn-helix
DNA-binding motif. These observations strongly suggest that
the NwsB protein is likely a homolog of NodW. However, an
nwsB mutant was still able to nodulate cowpea, siratro, and mung
bean (
21).
A third global regulatory component, NolA, is involved in mediating the repression of the nodulation genes. NolA, a member of the MerR family of regulatory proteins, positively activates the repressor NodD2, which then represses nod gene expression (18, 19). nolA was first identified as a genotype-specific gene since it conferred upon members of B. japonicum serogroup 123 the ability to nodulate certain soybean genotypes (34). The nolA gene possesses the unique capacity to encode three functionally distinct proteins, derived from the translation of three in-frame ATG initation sites (29). Recently, we showed that NolA plays a key regulatory role in the feedback repression of nod gene transcription in response to intracellular Nod signal production (26). Interestingly, expression of nolA is regulated in a population-density-dependent manner by an extracellular factor that accumulates in the supernatant of B. japonicum cultures (27). The population density expression of nolA is reminiscent of that observed with genes under quorum-sensing control. In quorum sensing, the bacteria respond to the accumulation of a self-generated, diffusible signal. The quorum signal functions as a means to monitor population levels, allowing for appropriate gene expression when the quorum signal exceeds a threshold (for a review, see reference 46). Quorum sensing appears to be a widespread phenomenon among many plant-associated microbes (see, for example, references 3, 8, 16, 24, 32, 33, and 44). General differences occur in the mode by which this cell-cell communication occurs among gram-negative and gram-positive bacteria. For instance, the quorum-sensing molecules of gram-negative bacteria are generally N-acylhomoserine lactones (acyl-HSLs) (17), while in gram-positive bacteria, small peptides usually serve an equivalent role (25). In gram-negative bacteria, the specific receptors for the acyl-HSLs are members of the LuxR family of transcriptional regulators (17). In contrast, two-component systems perceive the quorum signals in gram-positive bacteria (25). Studies by Bassler and coworkers showed that two-component systems regulate genes in the gram-negative bacterium Vibrio harveyi in response to quorum signals (4, 5, 15). In the present study, we sought to further characterize the role of the response regulator NwsB in both nod gene regulation and the nodulation process. The results demonstrate that mutations to nwsB decreased nod gene expression in B. japonicum in response to genistein. In addition, we also show that NwsB is involved in mediating the population-density-dependent expression of the nodulation genes.

MATERIALS AND METHODS
Bacterial strains and culture conditions.
The bacterial strains and plasmids used in this study are shown
in Table
1. For routine growth,
B. japonicum strains were cultured
in RDY medium at 30°C (
42). HM salt medium (
9) supplemented
with 0.1% arabinose was used for growth of
B. japonicum for
matings and for extracting nucleic acids.
Escherichia coli strains
were maintained in Luria-Bertani medium at 37°C (
35). When
appropriate, antibiotics were added to the culture medium at
the following concentrations: for
B. japonicum we used 100 µg
of streptomycin, spectinomycin, kanamycin, or tetracycline/ml
and 30 µg of chloramphenicol/ml, and for
E. coli we used
50 µg of ampicillin, spectinomycin, or kanamycin/ml and
25 µg of tetracycline/ml.
B. japonicum strain JNWS21, harboring a
nwsB interposon mutation,
was generated as follows: PCR was used to amplify the coding
regions of the
B. japonicum nwsB gene. The amplified DNA included
regions 5' and 3' of the
nwsB gene (
21). The primers used were
5'-GGAGACCGGGCCGGATCACC-3' and 5'-CGTTACAACTTGGCTTCATCC-3'.
The PCR product (2.2 kb) was ligated into the pCR2.1-TOPO vector
(Invitrogen, Carlsbad, Calif.). The resultant plasmid (pCR2.1-NwsB)
was digested with
SspI and filled in with Klenow. An Sm
r-Sp
r cassette obtained by digesting plasmid pHP45

with
SmaI was inserted
into blunt-ended pCR2.1-NwsB. The resultant plasmid, pCR2.1-NWSB

,
was digested with
EcoRI, and the 4.2-kb fragment containing
nwsB was cloned into the
EcoRI site of the suicide vector pSUP202
(
39). The resultant plasmid was transformed into
E. coli S17-1
(
39) and mobilized by biparental mating into
B. japonicum USDA110.
Transconjugants were selected based on Sp
r-Sm
r and Tc
s, the
latter being an indication of a double-crossover event. Confirmation
of these mutations was verified by Southern blot analyses (data
not shown). To generate an
nwsB mutation in strain JLA6 (an
Sm
r-Sp
r USDA110 strain harboring a chromosomal
nolA-lacZ fusion
[
27])
, pCR2.1-NWSB

was digested with
EcoRI and the 4.2-kb
nwsB fragment cloned into the vector pGEM-T (Promega, Madison, Wis.),
creating pGEMT-NwsB

. pGEMT-NwsB

was then digested with
HindIII
to release the Sm
r-Sp
r cassette, and the
nwsB-containing fragment
was filled in with Klenow. A Km
r cassette from pBSL15 (
1) was
then blunt-end cloned into the
nwsB gene, yielding pGEMT-NWSB-Km.
The
nwsB fragment was digested with
EcoRI, cloned into pSUP202,
and conjugally transferred to strain JLA6 as described above.
Transconjugants were selected on the basis of kanamycin resistance
and tetracycline sensitivity. The mutations generated were confirmed
by Southern hybridization (data not shown).
ß-Galactosidase activity assays.
ß-Galactosidase activity was assayed as described by Banfalvi et al. (2). The induction of nod-lacZ expression by genistein was measured as described previously (41, 47). For induction with conditioned medium (CM), assays were performed as described by Loh et al. (27). CM was obtained from supernatants of B. japonicum cultures grown to an optical density at 600 nm (OD600) of 2.0. Under the conditions used, an OD600 unit corresponded to ca. 109 cells/ml. The CM was concentrated 100-fold by rotary evaporation and added to induction assays (10 µl of concentrated CM per ml of induction medium [27]). Induction assays were performed in minimal medium (6). ß-Galactosidase activity was measured 14 h after induction as detailed by Banfalvi et al. (2).
Plant nodulation assays.
Seeds of Glycine max (soybean) cv. Essex and Vigna unguiculata (cowpea) cv. Caloona were surface sterilized as described by Nieuwkoop et al. (31). After germination for 48 h, the seedlings were transferred to either plastic growth pouches (Mega International, Minneapolis, Minn.) or plastic Leonard jars containing vermiculite. The seedlings were then inoculated with 5 x 107 cells of the appropriate bacterial culture. Inoculation of the bacterial cultures was performed in the presence or absence of CM (10 µl of concentrated CM per ml of culture). Plants were grown in a growth chamber under a 16-h photoperiod. The plants were watered with a nitrogen-free nutrient solution (45).
GUS assays.
For GUS (ß-glucuronidase) assays, 107 B. japonicum cells harboring the plasmid pVKNodYGUS4 or pVKGUS (27) were inoculated onto soybean or cowpea roots. At 24 days postinoculation, nodules were harvested and examined for GUS expression. GUS assays were performed as described by Jefferson et al. (23). Nodules were sectioned and prepared as described in Loh et al. (27). Digital images were taken on a stereomicroscope (Olympus SZX12; Olympus, Tokyo, Japan) fitted with an Olympus DP10 camera or a Nikon E600 microscope fitted with Nomarski optics.

RESULTS
Expression of nolA and nodD2 is significantly reduced in an nwsB mutant.
Previous work (
27) demonstrated that the
nolA and
nodD2 genes
were expressed in a population density fashion. Consistent with
this, the expression of both
nolA-lacZ and
nodD2-lacZ (i.e.,
in strains Bj110-42 [
18] and Bj110-1248 [
19], respectively)
were found to increase with culture density (Fig.
1A). In contrast,
analyses of the same fusions in an
nwsB mutant strain revealed
a significant reduction in both
nolA-lacZ (i.e., in strain JNWS24)
and
nodD2-lacZ (i.e., strain JNWS41) expression, even at high
population densities (Fig.
1A). Since a quorum factor found
in CM was previously shown to modulate the population density
expression of
nolA and
nodD2, CM derived from cultures of either
USDA110 or the
nwsB mutant (i.e., JNWS21) were tested for their
ability to induce
nolA-lacZ and
nodD2-lacZ expression (Table
2). While the addition of CM from USDA110 cultures resulted
in induction of
nolA-lacZ and
nodD2-lacZ expression in the wild
type (i.e., Bj110-42 and Bj110-1248, respectively), significantly
less expression was detected in the
nwsB mutant strains JNWS24
(i.e.,
nolA-lacZ) and JNWS44 (
nodD2-lacZ). Similarly, the addition
of CM derived from the
nwsB mutant strain JNWS21 resulted in
strong induction of
nolA-lacZ and
nodD2-lacZ expression in the
wild type, with reduced expression in both strains JNWS24 and
JNWS41. This latter result suggests that the
nwsB mutant strain
retains the capacity to synthesize the quorum signal but is
defective in its response to this signal as measured by
nolA and
nodD2 induction.
Population density expression of nolA is restored by overexpression of NodW.
A closer examination of the expression of
nolA-lacZ expression
in strain JNWS24 revealed that, while
nolA expression was reduced
in this strain, slightly elevated levels of
nolA expression
could still be detected in this strain at high culture densities
(cf. wild type [400 U] and JNWS24 [75 U]) (Fig.
1A). Since cross
talk between NwsB and NodW had been previously reported (
21),
we suspected that NodW could account for the residual
nolA activity
in strain JNWS24. Based on this assumption, we reasoned that
overexpression of NodW would complement the quorum-defective
phenotype observed with the
nwsB mutant. As shown in Fig.
1B,
the expression of
nodW in strain JNWS82, containing an
nwsB mutation and a chromosomal
nolA-lacZ fusion, restored the ability
of this mutant to express
nolA in a population density manner.
Interestingly, complementation was also observed in the
nwsB mutant (i.e., strain JNWS83) expressing the nonphosphorylated
form of NodW (i.e., NodWD70N) (
28). Control transconjugants
with the vector pTE3 (i.e., JNWS81) did not exhibit population
density expression of
nolA-lacZ (Fig. 1B).
Effects of nwsB mutation on nodY expression in vitro and in planta.
To determine the effects of the nwsB mutation on nodY expression, the ability of genistein to induce a nodY-lacZ fusion at low and high ODs was assayed. At a low OD (i.e., OD600 = 0.1), genistein induction of nodY-lacZ expression in the nwsB mutant (i.e., JNWS31) was reduced compared to that of the wild type (i.e., ZB977) (Fig. 2A). However, unlike the wild type, nodY-lacZ induction in the nwsB mutant was not affected by cell population density (cf. OD600 = 0.1 versus OD600 = 1.8). In agreement with this, the addition of CM derived from B. japonicum cultures grown to an OD600 of 2.0 had little effect on nod gene expression in JNWS31 (Fig. 2B). In contrast, addition of CM drastically reduced the ability of genistein to induce nodY-lacZ expression in the wild type. To examine whether the nwsB mutation would affect nodY expression in planta, we inoculated soybean and cowpea plants with nwsB mutant transconjugants harboring a nodY-GUS fusion (i.e., strain JNN41). As shown in Fig. 3, little or no nodY-GUS expression was observed in nodules infected with the wild-type nodY-GUS transconjugants. This result is similar to that reported previously (27), where nodY-GUS expression was not detected in nodules harvested at time intervals ranging from 6 to 30 days postinoculation. In contrast, nodules infected with strain JNN41 exhibited significant GUS staining at 24 days postinoculation (Fig. 3). As a positive control, plants were infected with the nolA mutant BjB3 harboring the nodY-GUS fusion. Nodules derived from this sample showed strong GUS staining, as previously reported (27).
Effect of CM on nodulation.
We next sought to determine the effect of CM addition on the
nodulation ability of an
nwsB mutant. The nodulation tests were
performed in plastic growth pouches that allowed us to monitor
nodule development spatially and temporally. As a reference
mark, the root tip at the time of inoculation was noted on the
outside of the plastic pouches. In previous studies, it was
shown that the zone of emergent root hairs (just above the root
tip) was the region of the root most susceptible to rhizobial
infection (see, for example, reference
7). This mark also allowed
us to distinguish between root tissue that was present at the
time of bacterial inoculation and root tissue that formed after
inoculation. Using this method, we were able to separate nodules
that formed on root tissue already present (i.e., no delay in
nodulation) versus nodules that were colonized by bacteria that
were inhibited or delayed in their ability to infect the soybean
root (i.e., nodules formed below the root tip mark). In samples
where no CM was added, the
nwsB mutant showed a slight delay
in its ability to nodulate soybean (Fig.
4). This is reflected
in fewer nodules found above the root tip mark and a corresponding
increase in nodules formed below the root tip mark. The addition
of CM to wild-type cultures drastically reduced the ability
to nodulate soybean, resulting in very few nodules formed above
the root tip mark. This result is consistent with that reported
by Loh et al. (
27). In contrast to what was observed with the
wild type, the addition of CM had little or no effect on the
ability of the
nwsB mutant (i.e., JNWS21) to nodulate soybean.
To further characterize the ability of the JNWS21 to nodulate,
we compared the ability of this strain to nodulate soybean in
competition with the wild type. JNWS21 and wild-type cells were
mixed in different ratios and inoculated onto soybean or cowpea
plants in the presence or absence of CM. The nodules formed
above the root tip mark were selected and streaked on agar plates.
Single colonies were picked and tested for streptomycin resistance,
the antibiotic marker for mutant JNWS21. Table
3 clearly shows
that the addition of CM to the bacterial inoculant samples increased
the ability of the
nwsB mutant strain to nodulate both soybean
and cowpea.
View this table:
[in this window]
[in a new window]
|
TABLE 3. Effect of CM on the ability of B. japonicum strains USDA110 and JNWS21 (nwsB mutant) to nodulate soybean
|

DISCUSSION
Previous work had demonstrated that NodW was essential for the
full expression of the
B. japonicum nodulation genes. The requirement
for NodW stems from the fact that NodVW, in addition to NodD,
forms a second isoflavonoid recognition system in
B. japonicum (
28). Hence, mutations to NodVW reduce the ability of this bacterium
to perceive and respond to the plant-produced isoflavonoids.
In the present study, we demonstrated that a mutation to
nwsB also results in decreased
nod gene expression. Given the high
similarity to NodW, it is likely that in the presence of genistein,
NwsB is activated by a cellular sensor kinase, contributing
to the activation of the nodulation genes. In this regard, Grob
et al. (
21) suggested that, in addition to its cognate kinase
NwsA, activation of NwsB may also occur via a second unidentified
sensor kinase. This view stems from the fact that a
nodW nwsA double mutant was still able to nodulate cowpea, siratro, and
mung bean. A likely candidate for this would be the sensor kinase
NodV, which responds to the isoflavonoid genistein (
28).
In agreement with the fact that expression of the nodulation genes is essential for nodulation, the nwsB mutant was found to be slightly delayed in its ability to nodulate both cowpea and soybean. This delay was reflected in the increased number of nodules found in root tissue that was not present at the time of inoculation (i.e., below the root tip mark, Fig. 4). These nodulation results for cowpea differ slightly from those published by Grob et al. (21), who noted that an nwsB mutation did not affect the ability of the bacterium to infect cowpea. This discrepancy may reflect differences both in the way that the plants were grown and in the criteria by which nodules were scored. For instance, our growth assays utilized plastic growth pouches, whereas Grob et al. performed their plant infection tests in glass jars containing vermiculite. In addition, our infection tests scored nodule numbers in relation to the root tip mark at the time of inoculation. This is in contrast to work by Grob et al. (21), where total nodules per plant were counted 21 days postinoculation.
NwsB is also involved in the regulation of the nodulation genes in response to cell population density. B. japonicum strains mutated in nwsB no longer demonstrated culture-density-dependent expression of nolA and nodD2. Consistent with the fact that nolA and nodD2 negatively regulate the expression of the nodYABC operon, nodY-lacZ expression was not repressed in the nwsB mutant at high cell population densities. The inability of the nwsB mutant to respond to cell population densities was further examined in nodulation assays. The results suggest that quorum regulation does play a significant role in the ability of a bacterium to infect its host plant. While the addition of CM derived from cells grown to a high OD (OD600 = 2.0) significantly delayed the ability of the wild-type strain to nodulate soybean and cowpea, the quorum-insensitive nwsB mutant showed no delay when similarly treated. In addition, the application of CM to inoculants containing a mixture of both the wild type and the nwsB mutant affected the occupancy of nodules formed above the root tip mark at the time of inoculation. With CM, the nwsB mutant represented a greater proportion of the nodule population than that found in the untreated inoculants. Therefore, at high cell population densities, the nwsB mutant is able to better compete with the wild type for nodule occupancy. A mutant defective in the quorum regulation of the nodulation genes is important in view of the fact that high population densities are found in commercial inoculants. Indeed, Loh et al. (27) demonstrated that inducers of nolA and nodD2 were present in commercial inoculants and could ultimately reduce the efficacy of these inoculants. Consistent with this observation, Lohrke et al. (30) demonstrated that soybean nodulation was reduced when inoculants with a high population density were utilized.
Finally, the results demonstrated that the overexpression of NodW can compensate for the loss of NwsB. As discussed above, this result is probably due to the fact that NodW is likely a homolog of NwsB. Garcia et al. (18) showed that nolA expression was not induced by the isoflavonoid genistein. This result can be explained by the fact that nolA is regulated by unphosphorylated forms of NodW and NwsB. For example, expression of NodWD70N, a mutant NodW that is not phosphorylated, restored quorum-sensing regulation of nolA and the nodulation genes. Previous work showed that phospho-NodW was required for nod gene induction (28). The cross talk between NodVW and NwsAB and the fact that unphosphorylated and phosphorylated forms of the response regulators have different effects on nolA and nod gene expression suggests that control of phosphorylation is likely a critical switch between activation and repression of nod gene expression.
Our results clearly indicate that a second response regulator, NwsB, plays a key role in nod gene regulation and the ability of the bacterium to effectively infect its host plants. It is intriguing that B. japonicum utilizes a two-component system to mediate induction of the nodulation genes, as well as to mediate the repression of the nodulation genes. NwsB therefore forms a key junction, by which the bacterium integrates both plant- and bacterium-derived signals, leading to the appropriate expression of the nodulation genes.
As mentioned above, quorum sensing among plant-associated microbes generally involves the production of acyl-HSLs that interact with a LuxR-type transcriptional regulator (16, 17, 24, 32, 33), leading to the transcription of quorum-regulated genes required for infection. Unlike these systems, the B. japonicum quorum system does not appear to be AHL-LuxR based (27). Given that two-component systems are known to regulate target genes in response to environmental stimuli, the possibility exists that NwsAB may sense the quorum molecule and, therefore, function as an interface between the quorum signal and its target genes. Indeed, this role has been described in both Vibrio harveyi and the plant pathogens Ralstonia solanacearum and Xanthomonas campestris, in which non-AHL quorum signals are detected by sensor proteins of two-component regulator systems (5, 8, 13, 14, 40). Finally, the fact that NwsB affects the expression of the MerR-type regulator NolA illustrates the cellular integration of members of different global families in the control of B. japonicum gene expression.

ACKNOWLEDGMENTS
This work was supported by grant MCB-9728281 from the National
Science Foundation and by Liphatech Corp. (Milwaukee, Wis.).

FOOTNOTES
* Corresponding author. Mailing address: M409 Walters Life Sciences Building, University of Tennessee, Knoxville, TN 37996. Phone: (865) 974-4041. Fax: (865) 974-4007. E-mail:
gstacey{at}utk.edu.


REFERENCES
1
- Alexeyev, M. F. 1995. Three kanamycin resistance gene cassettes with three different polylinkers. BioTechniques 18:52-55.
2
- Banfalvi, Z., A. Nieuwkoop, M. Schell, L. Besl, and G. Stacey. 1988. Regulation of nod gene expression in Bradyrhizobium japonicum. Mol. Gen. Genet. 214:420-424.[CrossRef][Medline]
3
- Barber, C. E., J. L. Tang, J. X. Feng, M. Q. Pan, T. J. G. Wilson, H. M. Slater, J. Dow, P. Williams, and M. J. Daniels. 1997. A novel regulatory system required for pathogenicity of Xanthomonas campestris is mediated by a small diffusible signal molecule. Mol. Microbiol. 24:555-566.[CrossRef][Medline]
4
- Bassler, B. L., M. Wright, and M. R. Silverman. 1994. Multiple signaling systems controlling expression of luminescence in Vibrio harveyi: sequence and function of genes encoding a second sensory pathway. Mol. Microbiol. 13:273-286.[Medline]
5
- Bassler, B. L., M. Wright, R. E. Showalter, and M. R. Silverman. 1993. Intercellular signaling in Vibrio harveyi: sequence and function of gene regulating expression of luminescence. Mol. Microbiol. 9:773-786.[Medline]
6
- Bergersen, F. J. 1961. The growth of Rhizobium in synthetic media. Aust. Biol. Sci. 14:349-360.
7
- Bhuvaneswari, T. V., A. A. Bhagwat, and W. D. Bauer. 1981. Transient susceptibility of root cells in four common legumes to nodulation by rhizobia. Plant Physiol. 68:1144-1149.[Abstract/Free Full Text]
8
- Clough, S. J., K. E. Lee, M. A. Schell, and T. P. Denny. 1997. A two-component system in Ralstonia (Pseudomonas) solanacearum modulates production of PhcA-regulated virulence factors in response to 3-hydroxypalmitic acid methyl ester. J. Bacteriol. 179:3639-3648.[Abstract/Free Full Text]
9
- Cole, M. A., and G. H. Elkan. 1973. Transmissible resistance to penicillin G, neomycin, and chloramphenicol in Rhizobium japonicum. Antimicrob. Agents Chemother. 4:248-253.[Abstract/Free Full Text]
10
- Denarie, J., F. Debelle, and J.-C. Prome. 1996. Rhizobium lipo-chitooligosaccharide nodulation factors: signaling molecules mediating recognition and morphorgenesis. Annu. Rev. Biochem. 65:503-535.[CrossRef][Medline]
11
- Egelhoff, T., and S. Long. 1985. Rhizobium meliloti nodulation genes: identification of nodABC gene products, purification of NodA protein, and expression of nodA in Rhizobium meliloti. J. Bacteriol. 164:591-599.[Abstract/Free Full Text]
12
- Fisher, R. F., and S. R. Long. 1992. Rhizobium-plant signal exchange. Nature 357:655-660.[CrossRef][Medline]
13
- Flavier, A. B., L. M. Ganova-Raeva, M. A. Schell, and T. P. Denny. 1997. Hierarchical autoinduction in Ralstonia solanacearum: control of acyl-homoserine lactone production by a novel autoregulatory system responsive to 3-hydroxypalmitic acid methyl ester. J. Bacteriol. 179:7089-7097.[Abstract/Free Full Text]
14
- Flavier, A. B., S. J. Clough, M. A. Schell, and T. P. Denny. 1997. Identification of 3-hydroxypalmitic acid methyl ester as a novel autoregulator controlling virulence in Ralstonia solanacearum. Mol. Microbiol. 26:251-259.[CrossRef][Medline]
15
- Freeman, J., A. B. N. Lilley, and B. L. Bassler. 2000. A genetic analysis of the functions of LuxN: a two-component hybrid sensor kinase that regulates quorum sensing in Vibrio harveyi. Mol. Microbiol. 35:139-149.[CrossRef][Medline]
16
- Fuqua, W. C., and S. Winans. 1994. A LuxR-LuxI type regulatory system activates Agrobacterium Ti plasmid conjugal transfer in the presence of a plant tumor metabolite. J. Bacteriol. 176:2796-2806.[Abstract/Free Full Text]
17
- Fuqua, W. C., S. C. Winans, and E. P. Greenberg. 1994. Quorum sensing in bacteria: the LuxR-LuxI family of cell density-responsive transcriptional regulators. J. Bacteriol. 176:269-275.[Free Full Text]
18
- Garcia, M. L., J. Dunlap, J. Loh, and G. Stacey. 1996. Phenotypic characterization and regulation of the nolA gene of Bradyrhizobium japonicum. Mol. Plant-Microbe Interact. 9:625-635.[Medline]
19
- Göttfert, M., D. Holzhauser, D. Bani, and H. Hennecke. 1992. Structural and functional analysis of two different nodD genes in Bradyrhizobium japonicum USDA110. Mol. Plant-Microbe Interact. 5:257-265.[Medline]
20
- Göttfert, M., P. Grob, and H. Hennecke. 1990. Proposed regulatory pathway encoded by the nodV and nodW genes, determinants of host specificity in Bradyrhizobium japonicum. Proc. Natl. Acad. Sci. USA 87:2680-2684.[Abstract/Free Full Text]
21
- Grob, P., P. Michel, H. Hennecke, and M. Göttfert. 1993. A novel response-regulator is able to suppress the nodulation defect of a Bradyrhizobium japonicum nodW mutant. Mol. Gen. Genet. 241:531-541.[CrossRef][Medline]
22
- Gyorgypal, Z., N. Iyer, and A. Kondorosi. 1988. Three regulatory nodD alleles of diverged flavonoid specificity are involved in host-dependent nodulation by Rhizobium meliloti. Mol. Gen. Genet. 212:85-92.[CrossRef]
23
- Jefferson, R. A., T. A. Kavanagh, and M. W. Bevan. 1987. GUS fusions: ß-glucuronidase as a sensitive and versatile gene fusion marker in higher plants. EMBO J. 6:3901-3907.[Medline]
24
- Jones, S., B. Yu, N. J. Bainton, M. Birdsall, B. W. Bycroft, S. R. Chhabra, J. R. Cox, P. Golby, P. J. Reeves, S. Stephens, M. K. Winson, G. P. C. Salmond, G. Stewart, and P. Williams. 1993. The lux autoinducer regulates the production of exoenzyme virulence determinants in Erwinia carotovora and Pseudomonas aeruginosa. EMBO J. 12:2477-2482.[Medline]
25
- Kleerebezem, M., L. E. N. Quadri, O. P. Kuipers, and W. M. de Vos. 1997. Quorum sensing by peptide pheromones and two-component signal-transduction systems in gram-positive bacteria. Mol. Microbiol. 24:895-904.[CrossRef][Medline]
26
- Loh, J., and G. Stacey. 2001. Feedback regulation of the Bradyrhizobium japonicum nodulation genes. Mol. Microbiol. 41:1357-1364.[CrossRef][Medline]
27
- Loh, J., J. P.-Y. Yuen, M. G. Stacey, D. Lohar, A. Welborn, and G. Stacey. 2001. Population-density-dependent expression of the Bradyrhizobium japonicum nodulation genes. Mol. Microbiol. 42:37-46.[CrossRef][Medline]
28
- Loh, J., M. Garcia, and G. Stacey. 1997. NodV and NodW, a second flavonoid recognition system regulating nod gene expression in Bradyrhizobium japonicum. J. Bacteriol. 179:3013-3020.[Abstract/Free Full Text]
29
- Loh, J., M. G. Stacey, M. J. Sadowsky, and G. Stacey. 1999. The Bradyrhizobium japonicum nolA gene encodes three functionally distinct proteins. J. Bacteriol. 181:1544-1554.[Abstract/Free Full Text]
30
- Lohrke, S. M., C. J. Madrzak, H.-G. Hur, A. K. Judd, J. H. Orf, and M. J. Sadowsky. 2000. Inoculum density-dependent restriction of nodulation in the soybean-Bradyrhizobium japonicum symbiosis. Symbiosis 29:59-70.
31
- Nieuwkoop, A. J., Z. Banfalvi, N. Deshmane, D. Gerhold, M. G. Schell, K. M. Sirotkin, and G. Stacey. 1987. A locus encoding host range is linked to the common nodulation genes of Bradyrhizobium japonicum. J. Bacteriol. 169:2631-2638.[Abstract/Free Full Text]
32
- Piper, K. R., B. von Bodman, and S. K. Farrand. 1993. Conjugation factor of Agrobacterium tumefaciens regulates. Ti plasmid transfer by autoinduction. Nature 362:448-450.[CrossRef][Medline]
33
- Rosemeyer, V., V. J. Michiels, C. Verreth, and J. Vanderleyden. 1991. luxI- and luxR-homologous genes of Rhizobium etli CNPAF512 contribute to synthesis of autoinducer molecules and nodulation of Phaseolus vulgaris. J. Bacteriol. 180:815-821.[Abstract/Free Full Text]
34
- Sadowsky, M. J., P. B. Cregan, M. Göttfert, A. Sharma, D. Gerhold, F. Rodriguez-Quinones, H. H. Keyser, H. Hennecke, and G. Stacey. 1991. The Bradyrhizobium japonicum nolA gene and its involvement in the genotype-specific nodulation of soybeans. Proc. Natl. Acad. Sci. USA 88:637-641.[Abstract/Free Full Text]
35
- Sambrook, J., E. F. Fritsch, and T. Maniatis. 1989. Molecular cloning: a laboratory manual, 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
36
- Sanjuan, J., P. Grob, M. Göttfert, H. Hennecke, and G. Stacey. 1992. NodW is essential for the full expression of the common nodulation genes in Bradyrhizobium japonicum. Mol. Plant-Microbe Interact. 7:364-369.
37
- Schell, M. A. 1993. Molecular biology of the LysR family of transcriptional regulators. Annu. Rev. Microbiol. 47:597-626.[CrossRef][Medline]
38
- Schlaman, H. R., R. J. Okker, and B. J. J. Lugtenberg. 1992. Regulation of nodulation gene expression by NodD in rhizobia. J. Bacteriol. 174:5177-5182.[Free Full Text]
39
- Simon, R., U. Priefer, and A. Puhler. 1983. A broad host range mobilization system for in-vitro genetic engineering: transposon mutagenesis in gram-negative bacteria. Bio/Technology 1:784-791.[CrossRef]
40
- Slater, H., A. Alvarez-Morales, C. E. Barber, M. J. Daniels, and J. M. Dow. 2000. A two-component system involving an HDGYP domain protein links cell-cell signalling to pathogenicity expression in Xanthomonas campestris. Mol. Microbiol. 38:986-1003.[CrossRef][Medline]
41
- Smit, G., V. Puvansesarajah, R. W. Carlson, W. M. Barbour, and G. Stacey. 1992. Bradyrhizobium japonicum nodD1 can be specifically induced by soybean flavonoids that do not induce the nodYABCSUIJ operon. J. Biol. Chem. 267:310-318.[Abstract/Free Full Text]
42
- So, J.-S., A. L. M. Hodgson, R. Haughland, M. Leavitt, Z. Banfalvi, A. J. Nieuwkoop, and G. Stacey. 1987. Transposon-induced symbiotic mutants of Bradyrhizobium japonicum: isolation of two gene regions essential for nodulation. Mol. Gen. Genet. 207:15-23.[CrossRef][Medline]
43
- Stock, A. M., V. Robinson, and P. N. Goudreau. 2000. Two-component signal transduction. Annu. Rev. Biochem. 69:183-215.[CrossRef][Medline]
44
- Von Bodman, B. S., and S. Farrand. 1995. Capsular polysaccharide biosynthesis and pathogenicity in Erwinia stewartii require induction by an N-acylhomoserine lactone autoinducer. J. Bacteriol. 177:5000-5008.[Abstract/Free Full Text]
45
- Wacek, T. J., and W. J. Brill. 1976. Simple, rapid assay for screening nitrogen fixing ability in soybean. Crop Sci. 15:519-523.
46
- Withers, H., S. Swift, and P. Williams. 2001. Quorum sensing as an integral component of gene regulatory networks in gram-negative bacteria. Curr. Opin. Microbiol. 4:186-193.[CrossRef][Medline]
47
- Yuen, J. P.-Y., and G. Stacey. 1996. Inhibition of nod gene expression in Bradyrhizobium japonicum by organic acids. Mol. Plant-Microbe Interact. 9:424-428.
Journal of Bacteriology, March 2002, p. 1759-1766, Vol. 184, No. 6
0021-9193/02/$04.00+0 DOI: 10.1128/JB.184.6.1759-1766.2002
Copyright © 2002, American Society for Microbiology. All Rights Reserved.
This article has been cited by other articles:
-
Wei, M., Yokoyama, T., Minamisawa, K., Mitsui, H., Itakura, M., Kaneko, T., Tabata, S., Saeki, K., Omori, H., Tajima, S., Uchiumi, T., Abe, M., Ohwada, T.
(2008). Soybean Seed Extracts Preferentially Express Genomic Loci of Bradyrhizobium japonicum in the Initial Interaction with Soybean, Glycine max (L.) Merr. DNA Res
15: 201-214
[Abstract]
[Full Text]
-
Jitacksorn, S., Sadowsky, M. J.
(2008). Nodulation Gene Regulation and Quorum Sensing Control Density-Dependent Suppression and Restriction of Nodulation in the Bradyrhizobium japonicum-Soybean Symbiosis. Appl. Environ. Microbiol.
74: 3749-3756
[Abstract]
[Full Text]
-
Sanchez-Contreras, M., Bauer, W. D, Gao, M., Robinson, J. B, Allan Downie, J
(2007). Quorum-sensing regulation in rhizobia and its role in symbiotic interactions with legumes. Phil Trans R Soc B
362: 1149-1163
[Abstract]
[Full Text]
-
Gonzalez, J. E., Keshavan, N. D.
(2006). Messing with Bacterial Quorum Sensing. Microbiol. Mol. Biol. Rev.
70: 859-875
[Abstract]
[Full Text]
-
Gonzalez, J. E., Marketon, M. M.
(2003). Quorum Sensing in Nitrogen-Fixing Rhizobia. Microbiol. Mol. Biol. Rev.
67: 574-592
[Abstract]
[Full Text]
-
Loh, J., Carlson, R. W., York, W. S., Stacey, G.
(2002). Bradyoxetin, a unique chemical signal involved in symbiotic gene regulation. Proc. Natl. Acad. Sci. USA
99: 14446-14451
[Abstract]
[Full Text]
-
Loh, J., Stacey, G.
(2002). Nodulation Gene Regulation in Bradyrhizobium japonicum: a Unique Integration of Global Regulatory Circuits. Appl. Environ. Microbiol.
69: 10-17
[Full Text]