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Journal of Bacteriology, April 2002, p. 2116-2122, Vol. 184, No. 8
0021-9193/02/$04.00+0 DOI: 10.1128/JB.184.8.2116-2122.2002
Copyright © 2002, American Society for Microbiology. All Rights Reserved.
Departments of Biochemistry,1 Biological Sciences, Purdue University, West Lafayette, Indiana 47907,3 Microbial, Musculoskeletal, and Proliferative Diseases Center of Excellence and Drug Discovery, GlaxoSmithKline Pharmaceuticals, Collegeville, Pennsylvania 194262
Received 31 October 2001/ Accepted 22 January 2002
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Ha and Km values, and pH optima were determined for both activities. Kinetic studies of acetoacetyl-CoA thiolase implicated a ping-pong mechanism. CoA acted as an inhibitor competitive with acetyl-CoA. A millimolar Ki for a statin drug confirmed that E. faecalis HMG-CoA reductase is a class II enzyme. The oxidoreductant was NADP(H). A role for an active-site histidine during the first redox step of the HMG-CoA, reductase reaction was suggested by the ability of diethylpyrocarbonate to block formation of mevalonate from HMG-CoA, but not from mevaldehyde. Sequence comparisons with other HMG-CoA reductases suggest that the essential active-site histidine is His756. The mvaE gene product represents the first example of an HMG-CoA reductase fused to another enzyme. |
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FIG. 1. Intermediates and enzymes of the mevalonate pathway for isopentenyl diphosphate biosynthesis.
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In enterococci, the mevalonate pathway genes are clustered at two positions on the genome, and, uniquely, two enzymes of the mevalonate pathway appear to be encoded by a single gene, mvaE (25). One enzyme is acetoacetyl-coenzyme A (CoA) thiolase (acetyl-CoA C-acetyltransferase, EC 2.3.1.9), the catalyst for the first reaction of the mevalonate pathway (Fig. 1).
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FIG. 2. Substrates and products of the reaction catalyzed by HMG-CoA reductase (reaction 3). The putative enzyme-bound intermediates mevaldyl-CoA and mevaldehyde are shown in brackets.
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We report here the cloning of the mvaE gene of the gram-positive pathogen E. faecalis, its expression in Escherichia coli, and the purification and characterization of the gene product, which exists in the enterococci examined as a true bifunctional protein.
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Plasmids, bacterial strains, and culture media.
Expression vector pET28a(+) (Novagen) was modified to allow blunt cloning by replacing the NdeI site with ScaI to generate pET28-6Hblunt. Bacterial strains used included E. coli DH5
and BL21(DE3) (Invitrogen), Enterococcus hirae (ATCC 8043), E. faecalis strain 41, and Enterococcus faecium H62738 (GlaxoSmithKline culture collection). Genomic DNA from E. faecalis strain 41 was used for amplification of the mvaE open reading frame. Luria-Bertani (LB) medium and agar (20) supplemented with 50 µg of kanamycin per ml served for the growth of E. coli strains. Tryptone soy broth and agar or Todd Hewitt Broth supplemented with 5% (wt/vol) yeast extract served for the growth of enterococcal strains.
Construction of the expression plasmid.
The mvaE gene was PCR amplified from E. faecalis genomic DNA by using a forward primer with the start codon changed from TTG to ATG (5'-ATGAAAACAGTAGTTATTATTGATGC-3') and a reverse primer (5'-ATGTTATTGTTTTCTTAAATCATTTAAAATAGC-3'). The resulting 2.4-kb fragment was phosphorylated, gel purified, and ligated into ScaI-digested pET28-6Hblunt that had been dephosphorylated and gel purified (20). Plasmid DNA isolated from transformed E. coli DH5
cells was sequenced to confirm the presence of unaltered mvaE. BL21(DE3) cells were transformed with MvaEef-pET28-6Hblunt to express the N-terminally 6-His-tagged protein.
Expression and purification of the gene product.
E. coli BL21(DE3) cells transformed with MvaEef-pET28-6Hblunt were grown initially at 37°C. Following addition of 0.5 mM IPTG, growth was continued at 18°C. Harvested cells were washed with 0.9% saline and were suspended in a solution containing 10 mM imidazole, 300 mM NaCl, 1 mM phenylmethylsulfonyl fluoride, 1 mM dithiothreitol, 20 mM HEPES, pH 8.0 (Buffer A), and then were lysed in a French press. The supernatant liquid obtained by centrifugation of the cell lysate in a Beckman L8-70 ultracentrifuge (30,000 rpm, 60 min, 4°C) was applied to an Ni-NTA column. The column was washed with Buffer A and then was eluted successively with 50 and 100 mM imidazole in Buffer A. Fractions with high activity were combined and stored at -70°C. The most active fractions contained
95% homogeneous His-tagged protein (Fig. 3). Overall yields averaged 10 mg/liter.
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FIG. 3. SDS-PAGE of the expressed mvaE gene product purified by nickel affinity chromatography. S, standards of the indicated mass. Lane 1, early fractions of E. faecalis acetoacetyl-CoA thiolase/HMG-CoA reductase. Numbers indicate molecular sizes in kilodaltons.
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Acetoacetyl-CoA thiolase activity. Determination of acetoacetyl-CoA thiolase activity employed a Hewlett-Packard model 8452 diode array spectrophotometer with the cell compartment maintained at 37°C to monitor the change in absorbance at 302 nm that accompanies the formation or thiolysis of acetoacetyl-CoA (4). Standard assay conditions for each reaction studied follow: for reaction 1, synthesis of acetoacetyl-CoA, 1 mM acetyl-CoA, 10 mM MgCl2, 50 mM Tris, pH 10.5; reaction 2, thiolysis of acetoacetyl-CoA, 30 µM acetoacetyl-CoA, 100 µM CoA, 10 mM MgCl2, 50 mM Tris-HCl, pH 9.5. Both reactions were initiated by addition of enzyme. Assays employed a final volume of 200 µl. For both assays, 1 enzyme unit (eu) represents the synthesis or thiolysis in 1 min of 1 µmol of acetoacetyl-CoA. Reported data represent mean values for at least triplicate determinations.
HMG-CoA reductase activity. Spectrophotometric assays of HMG-CoA reductase activity at 37°C monitored the appearance or disappearance of NADP(H) at 340 nm. Standard assay conditions for each reaction studied follow: reaction 3, reductive deacylation of HMG-CoA to mevalonate, 0.4 mM NADPH, 1.0 mM (R,S)-HMG-CoA, 100 mM KCl, and 100 mM K xPO4, pH 6.5; reaction 4, reduction of mevaldehyde to mevalonate, 0.4 mM NADPH, 3.8 mM (R,S)-mevaldehyde, 100 mM KCl, and 100 mM KxPO4, pH 7.0; reaction 5, oxidative acylation of mevaldehyde to HMG-CoA, 3.0 mM NADP+, 0.5 mM CoA, 2.5 mM (R,S)-mevaldehyde, 100 mM KCl, 100 mM Tris-HCl, pH 9.3; reaction 6, oxidative acylation of mevalonate to HMG-CoA, 3 mM NADP+, 1.5 mM CoA, 4.5 mM (R,S)-mevalonate, 100 mM KCl, and 100 mM Tris-HCl, pH 8.0. Assays employed a final volume of 200 µl. Reactions were initiated by adding HMG-CoA, mevaldehyde, or mevalonate. For all four assays, 1 eu represents the turnover, in 1 min, of 1 µmol of NADP(H). This corresponds to the turnover of 1 µmol of mevaldehyde or 0.5 µmol of HMG-CoA or mevalonate. Reported data represent mean values for at least duplicate determinations.
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FIG. 4. The mvaE gene product is expressed as a fusion protein in enterococci. Western blots of the indicated enterococcal lysates and of the purified mvaE gene product are shown. Numbers indicate molecular sizes in kilodaltons.
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Described below are the kinetic properties of the two catalytic activities, acetoacetyl-CoA thiolase and HMG-CoA reductase.
Acetoacetyl-CoA thiolase. (i) Optimal temperature.
Optimum activity both for acetoacetyl-CoA synthesis and for thiolysis of acetoacetyl-CoA occurred at about 37°C (Fig. 5A). An Arrhenius plot yielded an estimated
Ha of 5.3 kcal for thiolysis of acetoacetyl-CoA (Fig. 5A, inset).
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FIG. 5. Effect of temperature on activity. Assays were conducted at the indicated temperatures under otherwise standard conditions. (A) Reaction 2, thiolysis of acetoacetyl-CoA; (B) reaction 3, reductive deacylation of HMG-CoA to mevalonate. The insets are selected data shown as Arrhenius plots.
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FIG. 6. Effect of hydrogen ion concentration on activity. All assays were conducted in a solution containing 50 mM sodium acetate, 50 mM glycine, 50 mM Tris, 50 mM 2-(N-morpholino)ethanesulfonic acid at the indicated pH under otherwise standard conditions. (A) Reaction 1, synthesis of acetoacetyl-CoA (), and reaction 2, thiolysis of acetoacetyl-CoA ( ); (B) reaction 3, reductive deacylation of HMG-CoA to mevalonate ( ), and reaction 4, reduction of mevaldehyde to mevalonate ( ); (C) reaction 5, oxidative acylation of mevaldehyde to HMG-CoA ( ), and reaction 6, oxidative acylation of mevalonate to HMG-CoA ( ).
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TABLE 1. Kinetic parameters for acetoacetyl-CoA thiolasea
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FIG. 7. Acetoacetyl-CoA thiolase proceeds via a ping-pong mechanism. (A) Acetoacetyl-CoA thiolysis (reaction 2). Assays employed the indicated concentrations of CoA and either 11 (), 23 ( ), 34 ( ), or 45 µM ( ) acetoacetyl-CoA. Inset: the Y intercepts were plotted versus the reciprocal of acetoacetyl-CoA concentration. (B) CoA competes with acetyl-CoA during synthesis of acetoacetyl-CoA. The reaction employed 0 (), 30 ( ), or 60 mM ( ) CoA, the indicated concentrations of acetyl-CoA, and otherwise standard conditions.
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HMG-CoA reductase. (i) Optimal temperature.
Optimal activity for catalysis of reaction 3 occurred at 37°C. An Arrhenius plot of selected data yielded a
Ha of 14 kcal (Fig. 5B).
(ii) Coenzyme specificity. Nucleotide specificity has been established for three class II HMG-CoA reductases. The P. mevalonii enzyme uses NAD(H) exclusively (9), whereas those of S. aureus (26) and A. fulgidus (12) use NAD(H) and NADP(H) equally well. By contrast, E. faecalis HMG-CoA reductase was specific for NADP(H) as the oxidoreductant for all four catalyzed reactions. Activity was undetectable with NAD(H), and even a 10-fold excess of NADH over NADPH did not inhibit reaction 3.
(iii) Optimal pH. The effect of hydrogen ion concentration on the rates of all four catalyzed reactions was determined. Optimal activity was observed at pH 6.5 and 7.0 for reductive reactions 3 and 4 (Fig. 6B) and at pH 8.0 and 9.5 for oxidative reactions 5 and 6 (Fig. 6C).
(iv) Kinetic parameters. Kinetic parameters were determined for all four catalyzed reactions. Table 2 compares these data to those for other characterized HMG-CoA reductases.
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TABLE 2. Kinetic parameters for E. faecalis HMG-CoA reductase
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FIG. 8. Inhibition by a statin drug of reaction 3, the reductive deacylation of HMG-CoA to mevalonate. Assays were conducted in the presence of 0 ( ) or 500 µM () fluvastatin at the indicated concentrations of HMG-CoA under otherwise standard conditions. All reactions were initiated by adding NADPH.
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FIG. 9. Effect of DEPC and subsequent addition of hydroxylamine hydrochloride on HMG-CoA reductase activity. (A) Effect on reaction 3, the reductive deacylation of HMG-CoA to mevalonate. Treatment with DEPC and with hydroxylamine hydrochloride was conduced on ice. Samples contained fusion protein in a solution containing 250 mM KCl, 10% (vol/vol) glycerol, 250 mM K xPO4, pH 6.5. DEPC in ethanol was added to a concentration of 0.8 ( ) or 8.0 mM (). A control contained ethanol but no DEPC ( ). After 40 min, hydroxylamine hydrochloride, pH 6.5, was added to a concentration of 700 mM (arrow). Ten-microliter portions removed at the indicated times were assayed for the ability to catalyze reaction 3, the reductive deacylation of HMG-CoA to mevalonate. Ao and A are the specific activities at zero time and at the indicated times, respectively. (B) Effect on reaction 4, the reductive deacylation of mevaldehyde to mevalonate. Reaction conditions were as described above but at pH 7.0 and using 8 mM DEPC and an ethanol control ( ). Data for reaction 4 ( ) are shown. Also shown are data for reaction 3 (), included to establish that reaction with DEPC had indeed occurred.
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The kinetic properties of E. faecalis acetoacetyl-CoA thiolase resemble those of previously characterized forms of the enzyme (Table 1). A plot of 1/(specific activity) versus 1/[acetoacetyl-CoA] and inhibition of acetoacetyl-CoA synthesis by CoA suggested that reactions 1 and 2 proceed via a ping-pong mechanism. Prior investigations have established the participation of an acyl-cysteinyl intermediate and roles for a histidine and a second cysteine as proton acceptors and donors during catalysis by acetoacetyl-CoA thiolase (17). Inspection of multiple sequence alignments suggested that the cognates of the acyl-acceptor Cys89Z, His348Z, and Cys278Z of Zoogloea ramigera acetoacetyl-CoA thiolase are Cys88E, His342E, and Cys372E of the E. faecalis enzyme, respectively. (Subscripts on residue numbers refer to the enzymes from E. faecalis [E] and Z. ramigera [Z]).
The sequence-based inference that E. faecalis HMG-CoA reductase is a class II enzyme was confirmed by the 0.5 mM Ki value for inhibition of reaction 3 by the statin drug fluvastatin. This Ki value is diagnostic of a class II enzyme (1, 12). As for both classes of the enzyme, inhibition was competitive with HMG-CoA. As anticipated for an enzyme from a mesophile, the temperature optimum was 37°C. The calculated activation energy
Ha of 14 kcal is similar to the
Ha of 13 kcal for A. fulgidus HMG-CoA reductase (12), suggesting that the same step is rate limiting for both enzymes. All four reactions catalyzed by HMG-CoA reductase exclusively employed NADP(H) as the coenzyme. Activity with NAD(H) was below detectable limits, and even a 10-fold molar excess of NAD(H) over NADP(H) did not inhibit reaction 3. The class II HMG-CoA reductase of P. mevalonii uses NAD(H) (11), and those of S. aureus (26) and A. fulgidus (12) use either NAD(H) or NADP(H). The E. faecalis enzyme is thus presently the only known class II HMG-CoA reductase that is specific for NADP(H).
As previously shown for P. mevalonii HMG-CoA reductase (7), exposure of the fusion protein to the histidine-modifying reagent DEPC severely attenuated catalysis of reaction 3, and subsequent treatment with hydroxylamine hydrochloride restored activity. By contrast, DEPC had no effect on reaction 4. Since hydroxylamine hydrochloride removes the ethoxyformyl group from histidyl but not from cysteinyl or lysyl residues (16), no catalytically critical cysteinyl or lysyl residue had been modified. These observations implicate a histidine essential for catalysis of reaction 3 but nonessential for reaction 4. This inference is consistent with the proposed role of a histidine that protonates the CoA thioanion released during the first stage of reaction 3 (7-9). Sequence comparisons suggest that the active-site histidine of E. faecalis HMG-CoA reductase is His756E (Fig. 10).
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FIG. 10. E. faecalis HMG-CoA reductase histidine 756 and its cognates. Amino acid sequences from characterized class II HMG-CoA reductases were aligned with CLUSTALW (www.expasy.ch).
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The Purdue contribution was funded by American Heart Association grant 0150503N (V.W.R.) and by National Institutes of Health grants HL 47113 (V.W.R.) and 52115 (C.V.S.).
Journal paper 16671 from the Purdue Agricultural Experiment Station. ![]()
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